Wall clock time and date at job start Tue Mar 31 2020 06:25:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86800 * 119.99547 * 2 1 4 4 H 1.48496 * 109.46986 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47457 * 299.99915 * 3 2 1 6 6 H 1.48501 * 109.47104 * 59.99987 * 3 2 1 7 7 C 1.38941 * 120.00180 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00369 * 180.02562 * 7 2 1 9 9 N 1.37101 * 119.99927 * 359.97438 * 7 2 1 10 10 C 1.34780 * 119.99707 * 180.02562 * 9 7 2 11 11 O 1.21294 * 120.00356 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99795 * 180.02562 * 10 9 7 13 13 N 1.46901 * 109.46921 * 179.97438 * 12 10 9 14 14 C 1.46906 * 110.99793 * 179.97438 * 13 12 10 15 15 H 1.09003 * 109.47279 * 325.00167 * 14 13 12 16 16 C 1.50701 * 109.46893 * 205.00308 * 14 13 12 17 17 C 1.38263 * 119.99139 * 319.71931 * 16 14 13 18 18 C 1.38229 * 120.01993 * 179.76934 * 17 16 14 19 19 C 1.38234 * 120.01590 * 0.51077 * 18 17 16 20 20 C 1.38331 * 119.98722 * 359.74759 * 19 18 17 21 21 Cl 1.73597 * 120.01542 * 180.02562 * 20 19 18 22 22 C 1.38194 * 119.98879 * 140.00340 * 16 14 13 23 23 C 1.50700 * 109.46893 * 85.00437 * 14 13 12 24 24 C 1.38233 * 119.61248 * 244.72701 * 23 14 13 25 25 C 1.38632 * 119.15871 * 179.75603 * 24 23 14 26 26 C 1.38676 * 118.41757 * 0.50739 * 25 24 23 27 27 C 1.38179 * 119.16533 * 359.73146 * 26 25 24 28 28 N 1.31851 * 119.62173 * 65.00043 * 23 14 13 29 29 H 0.97000 * 119.99884 * 0.02562 * 1 2 3 30 30 H 0.96995 * 120.00282 * 359.97438 * 9 7 2 31 31 H 1.09002 * 109.47060 * 299.99722 * 12 10 9 32 32 H 1.09001 * 109.47380 * 59.99809 * 12 10 9 33 33 H 1.00898 * 110.99877 * 56.04636 * 13 12 10 34 34 H 1.07997 * 119.99234 * 0.02562 * 17 16 14 35 35 H 1.08001 * 119.98698 * 180.25463 * 18 17 16 36 36 H 1.07992 * 120.00641 * 179.71846 * 19 18 17 37 37 H 1.07996 * 120.01227 * 359.97438 * 22 16 14 38 38 H 1.07998 * 120.42437 * 359.97438 * 24 23 14 39 39 H 1.07997 * 120.79258 * 180.26565 * 25 24 23 40 40 H 1.08003 * 120.41846 * 179.71043 * 26 25 24 41 41 H 1.08002 * 119.61890 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.7080 1.3465 0.0006 5 1 1.8893 2.3965 -1.2124 6 1 1.8892 2.3965 1.2125 7 6 2.0089 -1.2032 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3234 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0005 11 8 3.2104 -3.5578 -0.0010 12 6 1.2439 -4.8629 -0.0011 13 7 2.1986 -5.9794 -0.0016 14 6 1.4984 -7.2708 -0.0016 15 1 0.5853 -7.1890 0.5882 16 6 2.3911 -8.3263 0.5985 17 6 3.7411 -8.3406 0.3005 18 6 4.5614 -9.3055 0.8543 19 6 4.0305 -10.2631 1.6981 20 6 2.6789 -10.2525 1.9924 21 17 2.0114 -11.4543 3.0525 22 6 1.8590 -9.2831 1.4418 23 6 1.1497 -7.6531 -1.4170 24 6 -0.1775 -7.7427 -1.7931 25 6 -0.4875 -8.0902 -3.0988 26 6 0.5535 -8.3461 -3.9786 27 6 1.8560 -8.2415 -3.5292 28 7 2.1139 -7.9036 -2.2807 29 1 -0.4850 0.8401 -0.0004 30 1 0.3535 -2.3906 0.0002 31 1 0.6170 -4.9209 0.8886 32 1 0.6176 -4.9205 -0.8913 33 1 2.8335 -5.9126 0.7798 34 1 4.1557 -7.5952 -0.3619 35 1 5.6166 -9.3138 0.6244 36 1 4.6706 -11.0197 2.1271 37 1 0.8038 -9.2743 1.6712 38 1 -0.9629 -7.5411 -1.0798 39 1 -1.5153 -8.1638 -3.4222 40 1 0.3488 -8.6240 -5.0020 41 1 2.6724 -8.4396 -4.2080 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079111156.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:06 Heat of formation + Delta-G solvation = 23.962624 kcal Electronic energy + Delta-G solvation = -26496.274903 eV Core-core repulsion = 22594.821674 eV Total energy + Delta-G solvation = -3901.453229 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.098 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.54165 -39.30610 -38.23763 -36.75546 -35.75583 -33.90984 -32.45997 -31.89349 -31.18422 -30.94133 -30.62904 -27.37027 -25.37506 -23.98977 -23.42351 -22.77761 -22.56588 -20.66876 -19.29714 -17.94420 -17.38470 -16.93537 -16.36857 -16.07355 -15.78362 -15.46121 -15.19363 -15.09729 -14.52076 -14.26127 -14.09732 -13.82380 -13.75759 -13.46985 -13.35825 -13.18866 -13.03073 -12.62183 -12.24181 -11.85671 -11.71852 -11.56003 -11.48148 -11.43131 -11.37309 -11.05803 -10.94204 -10.34353 -10.22744 -9.87597 -9.52086 -9.41075 -9.13681 -8.98077 -8.73489 -8.48740 -8.13919 -7.96299 -6.41942 -3.82588 0.96320 1.12221 1.19079 1.29689 1.96610 3.16318 3.26952 3.34297 3.50288 3.74791 3.90263 4.03089 4.24218 4.27589 4.62646 4.70687 4.76006 4.81032 4.96225 5.00449 5.08546 5.17208 5.21789 5.25693 5.29763 5.32975 5.51062 5.63531 5.65533 5.72889 5.77207 5.92591 6.03770 6.04582 6.11908 6.23271 6.32578 6.45868 6.63605 6.74074 7.10589 7.55447 7.57001 8.06059 8.08340 8.60887 9.17892 9.53897 10.05197 10.75916 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.010892 B = 0.002738 C = 0.002408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2570.110773 B =10225.426933 C =11625.110354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.929 3.071 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.297 4.297 8 H 0.104 0.896 9 N -0.564 5.564 10 C 0.443 3.557 11 O -0.580 6.580 12 C 0.049 3.951 13 N -0.648 5.648 14 C 0.178 3.822 15 H 0.068 0.932 16 C -0.073 4.073 17 C -0.065 4.065 18 C -0.113 4.113 19 C -0.110 4.110 20 C -0.041 4.041 21 Cl -0.079 7.079 22 C -0.103 4.103 23 C 0.151 3.849 24 C -0.170 4.170 25 C -0.076 4.076 26 C -0.179 4.179 27 C 0.100 3.900 28 N -0.450 5.450 29 H 0.271 0.729 30 H 0.392 0.608 31 H 0.047 0.953 32 H 0.084 0.916 33 H 0.357 0.643 34 H 0.148 0.852 35 H 0.132 0.868 36 H 0.129 0.871 37 H 0.130 0.870 38 H 0.132 0.868 39 H 0.132 0.868 40 H 0.131 0.869 41 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.252 -22.342 -1.165 22.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.180 4.180 3 Si 0.756 3.244 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.427 4.427 8 H 0.121 0.879 9 N -0.201 5.201 10 C 0.228 3.772 11 O -0.464 6.464 12 C -0.083 4.083 13 N -0.282 5.282 14 C 0.067 3.933 15 H 0.086 0.914 16 C -0.074 4.074 17 C -0.083 4.083 18 C -0.132 4.132 19 C -0.128 4.128 20 C -0.068 4.068 21 Cl -0.050 7.050 22 C -0.122 4.122 23 C 0.012 3.988 24 C -0.190 4.190 25 C -0.102 4.102 26 C -0.199 4.199 27 C -0.058 4.058 28 N -0.158 5.158 29 H 0.081 0.919 30 H 0.225 0.775 31 H 0.065 0.935 32 H 0.102 0.898 33 H 0.179 0.821 34 H 0.165 0.835 35 H 0.150 0.850 36 H 0.147 0.853 37 H 0.148 0.852 38 H 0.150 0.850 39 H 0.150 0.850 40 H 0.149 0.851 41 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 0.347 -22.184 -1.457 22.234 hybrid contribution -1.705 0.679 0.548 1.915 sum -1.358 -21.504 -0.908 21.566 Atomic orbital electron populations 1.69622 1.05935 1.28028 1.50781 1.25256 0.95634 0.99713 0.97365 0.85806 0.79749 0.81150 0.77692 1.19190 1.20757 1.20772 1.19751 0.93397 0.82181 1.47370 0.87853 1.41854 1.09172 1.04586 1.64455 1.19705 0.88363 0.84573 0.84511 1.90532 1.13652 1.86986 1.55209 1.21758 0.94376 0.91043 1.01161 1.60040 1.18289 0.98180 1.51655 1.19233 0.95164 0.88822 0.90041 0.91440 1.19613 0.94703 0.96163 0.96942 1.21344 0.92534 0.97629 0.96808 1.21195 1.00398 0.94620 0.96953 1.21060 0.93081 0.99754 0.98944 1.20765 0.93945 0.93894 0.98191 1.98359 1.85922 1.55893 1.64860 1.20880 0.99860 0.94049 0.97431 1.20922 0.88747 0.94161 0.94978 1.21962 0.97347 1.02297 0.97406 1.21508 0.99762 0.95778 0.93123 1.22130 0.94283 1.02611 1.00896 1.22790 0.95729 0.94808 0.92463 1.67423 1.36760 1.09090 1.02522 0.91948 0.77509 0.93545 0.89803 0.82081 0.83460 0.84983 0.85274 0.85226 0.85018 0.85008 0.85105 0.82954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.51 13.05 55.50 0.72 -23.79 16 2 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 3 Si 0.93 21.08 29.55 -169.99 -5.02 16.06 16 4 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 5 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 6 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.30 -8.30 9.68 -14.94 -0.14 -8.45 16 8 H 0.10 3.04 7.16 -52.49 -0.38 2.66 16 9 N -0.56 -14.27 5.29 -10.96 -0.06 -14.32 16 10 C 0.44 10.42 7.82 -10.98 -0.09 10.34 16 11 O -0.58 -15.69 15.78 5.55 0.09 -15.60 16 12 C 0.05 0.86 5.96 -4.97 -0.03 0.83 16 13 N -0.65 -10.44 5.31 -110.45 -0.59 -11.02 16 14 C 0.18 2.31 2.54 -70.01 -0.18 2.13 16 15 H 0.07 0.76 7.39 -51.93 -0.38 0.38 16 16 C -0.07 -0.90 4.62 -104.63 -0.48 -1.38 16 17 C -0.06 -0.81 8.47 -39.58 -0.34 -1.14 16 18 C -0.11 -1.20 10.05 -39.59 -0.40 -1.60 16 19 C -0.11 -1.12 9.83 -39.55 -0.39 -1.51 16 20 C -0.04 -0.45 6.32 -39.49 -0.25 -0.70 16 21 Cl -0.08 -0.80 28.96 -51.86 -1.50 -2.30 16 22 C -0.10 -1.15 9.45 -39.54 -0.37 -1.53 16 23 C 0.15 2.01 5.51 -82.59 -0.45 1.55 16 24 C -0.17 -1.91 9.71 -39.44 -0.38 -2.29 16 25 C -0.08 -0.75 10.18 -39.27 -0.40 -1.15 16 26 C -0.18 -1.77 10.11 -39.44 -0.40 -2.17 16 27 C 0.10 1.16 11.18 -17.55 -0.20 0.96 16 28 N -0.45 -6.33 9.55 -9.47 -0.09 -6.42 16 29 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 30 H 0.39 9.47 7.90 -40.82 -0.32 9.14 16 31 H 0.05 0.71 8.06 -51.93 -0.42 0.29 16 32 H 0.08 1.41 8.00 -51.93 -0.42 0.99 16 33 H 0.36 5.96 7.70 -39.29 -0.30 5.65 16 34 H 0.15 2.06 7.73 -52.49 -0.41 1.65 16 35 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 36 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 37 H 0.13 1.26 8.04 -52.49 -0.42 0.84 16 38 H 0.13 1.20 7.95 -52.49 -0.42 0.78 16 39 H 0.13 0.96 8.06 -52.49 -0.42 0.53 16 40 H 0.13 0.93 8.06 -52.48 -0.42 0.51 16 41 H 0.15 1.40 8.06 -52.49 -0.42 0.98 16 LS Contribution 374.24 15.07 5.64 5.64 Total: -1.00 -32.35 374.24 -10.12 -42.47 By element: Atomic # 1 Polarization: 19.61 SS G_CDS: -4.71 Total: 14.90 kcal Atomic # 6 Polarization: -1.02 SS G_CDS: -4.60 Total: -5.62 kcal Atomic # 7 Polarization: -55.54 SS G_CDS: -0.01 Total: -55.55 kcal Atomic # 8 Polarization: -15.69 SS G_CDS: 0.09 Total: -15.60 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 17 Polarization: -0.80 SS G_CDS: -1.50 Total: -2.30 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.35 -10.12 -42.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079111156.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.432 kcal (2) G-P(sol) polarization free energy of solvation -32.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.470 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds