Wall clock time and date at job start Tue Mar 31 2020 06:25:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86804 * 119.99777 * 2 1 4 4 H 1.48494 * 109.46895 * 269.99738 * 3 2 1 5 5 H 1.48498 * 109.47013 * 29.99926 * 3 2 1 6 6 H 1.48497 * 109.47071 * 149.99746 * 3 2 1 7 7 C 1.38953 * 120.00057 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99940 * 180.02562 * 7 2 1 9 9 N 1.37097 * 119.99705 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99756 * 180.02562 * 9 7 2 11 11 O 1.21298 * 119.99615 * 0.02562 * 10 9 7 12 12 C 1.50701 * 120.00114 * 180.02562 * 10 9 7 13 13 N 1.46901 * 109.47082 * 179.97438 * 12 10 9 14 14 C 1.46894 * 110.99757 * 180.02562 * 13 12 10 15 15 H 1.08992 * 109.47540 * 34.99483 * 14 13 12 16 16 C 1.50699 * 109.47217 * 155.00282 * 14 13 12 17 17 C 1.38270 * 119.99517 * 219.99967 * 16 14 13 18 18 C 1.38217 * 120.03168 * 179.97438 * 17 16 14 19 19 C 1.38236 * 120.00739 * 359.97438 * 18 17 16 20 20 C 1.38330 * 119.99109 * 0.02562 * 19 18 17 21 21 Cl 1.73603 * 120.01339 * 179.97438 * 20 19 18 22 22 C 1.38194 * 119.99877 * 39.71857 * 16 14 13 23 23 C 1.50707 * 109.46715 * 274.99484 * 14 13 12 24 24 C 1.38223 * 119.61967 * 5.00679 * 23 14 13 25 25 C 1.38625 * 119.15978 * 180.27814 * 24 23 14 26 26 C 1.38677 * 118.42126 * 359.46985 * 25 24 23 27 27 C 1.38182 * 119.16110 * 0.48634 * 26 25 24 28 28 N 1.31856 * 119.61465 * 184.97751 * 23 14 13 29 29 H 0.96993 * 119.99935 * 0.02562 * 1 2 3 30 30 H 0.97000 * 120.00054 * 0.02562 * 9 7 2 31 31 H 1.08998 * 109.47182 * 60.00024 * 12 10 9 32 32 H 1.09000 * 109.46924 * 299.99550 * 12 10 9 33 33 H 1.00902 * 111.00071 * 56.04267 * 13 12 10 34 34 H 1.08004 * 119.98236 * 0.02562 * 17 16 14 35 35 H 1.07992 * 119.99468 * 180.02562 * 18 17 16 36 36 H 1.08005 * 120.00328 * 180.02562 * 19 18 17 37 37 H 1.08000 * 119.99747 * 0.02562 * 22 16 14 38 38 H 1.08002 * 120.41617 * 359.97438 * 24 23 14 39 39 H 1.08003 * 120.79223 * 179.72202 * 25 24 23 40 40 H 1.08006 * 120.41702 * 180.22168 * 26 25 24 41 41 H 1.07998 * 119.61686 * 179.76233 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0464 -1.4000 5 1 1.4455 2.6527 0.7000 6 1 3.5456 1.4403 0.7001 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3906 0.0005 10 6 1.9973 -3.5578 0.0016 11 8 3.2103 -3.5578 0.0030 12 6 1.2438 -4.8630 0.0010 13 7 2.1985 -5.9795 0.0017 14 6 1.4982 -7.2708 0.0006 15 1 0.5856 -7.1887 -0.5897 16 6 2.3913 -8.3261 -0.5991 17 6 1.8598 -9.2831 -1.4438 18 6 2.6783 -10.2510 -1.9947 19 6 4.0292 -10.2624 -1.7017 20 6 4.5617 -9.3053 -0.8568 21 17 6.2580 -9.3196 -0.4880 22 6 3.7425 -8.3338 -0.3094 23 6 1.1484 -7.6537 1.4156 24 6 1.4051 -6.7690 2.4461 25 6 1.0849 -7.1333 3.7447 26 6 0.5056 -8.3751 3.9580 27 6 0.2778 -9.2063 2.8779 28 7 0.6005 -8.8287 1.6562 29 1 -0.4850 0.8400 -0.0004 30 1 0.3534 -2.3906 -0.0002 31 1 0.6182 -4.9209 -0.8897 32 1 0.6162 -4.9205 0.8903 33 1 2.8328 -5.9124 0.7836 34 1 0.8046 -9.2737 -1.6739 35 1 2.2626 -10.9979 -2.6546 36 1 4.6689 -11.0186 -2.1326 37 1 4.1583 -7.5838 0.3471 38 1 1.8540 -5.8080 2.2426 39 1 1.2781 -6.4643 4.5703 40 1 0.2398 -8.6903 4.9563 41 1 -0.1694 -10.1766 3.0360 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079111159.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:10 Heat of formation + Delta-G solvation = 29.460822 kcal Electronic energy + Delta-G solvation = -26669.229390 eV Core-core repulsion = 22768.014581 eV Total energy + Delta-G solvation = -3901.214809 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.098 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.77636 -39.24251 -38.31561 -36.63644 -35.96148 -33.94980 -32.82333 -31.56303 -31.15363 -30.85592 -30.68005 -27.45754 -25.48875 -24.01900 -23.41150 -22.85699 -22.44309 -20.80406 -19.37429 -17.99828 -17.52746 -17.25424 -16.42916 -16.03981 -15.70602 -15.59728 -15.17070 -15.07181 -14.59024 -14.35907 -14.10627 -13.79474 -13.75180 -13.51671 -13.41339 -13.24761 -13.02357 -12.43283 -12.19114 -11.91220 -11.72990 -11.61905 -11.51212 -11.38494 -11.32410 -11.07400 -10.86201 -10.41705 -10.24993 -9.99793 -9.63068 -9.54387 -9.20380 -8.89490 -8.69881 -8.59251 -8.24271 -8.00321 -6.45113 -3.86036 0.89805 1.13528 1.17918 1.27274 2.12983 3.15891 3.25028 3.30501 3.55700 3.61123 3.83455 3.91400 4.16558 4.32327 4.51291 4.67389 4.76120 4.80627 4.94140 4.98577 5.01900 5.06454 5.20145 5.22377 5.29124 5.38066 5.46641 5.54498 5.63115 5.70548 5.84455 5.86458 5.96859 6.05144 6.15764 6.21638 6.27361 6.48962 6.50747 6.75093 7.00028 7.39769 7.52341 7.83850 8.02071 8.56646 9.14160 9.49671 10.00508 10.72430 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.010180 B = 0.002979 C = 0.002562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2749.943170 B = 9397.999458 C =10924.867340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.023 3.977 3 Si 0.930 3.070 4 H -0.277 1.277 5 H -0.284 1.284 6 H -0.269 1.269 7 C -0.300 4.300 8 H 0.104 0.896 9 N -0.561 5.561 10 C 0.439 3.561 11 O -0.581 6.581 12 C 0.043 3.957 13 N -0.652 5.652 14 C 0.176 3.824 15 H 0.110 0.890 16 C -0.038 4.038 17 C -0.093 4.093 18 C -0.111 4.111 19 C -0.116 4.116 20 C -0.036 4.036 21 Cl -0.077 7.077 22 C -0.084 4.084 23 C 0.106 3.894 24 C -0.175 4.175 25 C -0.067 4.067 26 C -0.178 4.178 27 C 0.100 3.900 28 N -0.471 5.471 29 H 0.272 0.728 30 H 0.392 0.608 31 H 0.092 0.908 32 H 0.049 0.951 33 H 0.353 0.647 34 H 0.128 0.872 35 H 0.129 0.871 36 H 0.128 0.872 37 H 0.132 0.868 38 H 0.139 0.861 39 H 0.136 0.864 40 H 0.133 0.867 41 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.617 -21.286 3.376 21.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.179 4.179 3 Si 0.757 3.243 4 H -0.203 1.203 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.429 4.429 8 H 0.121 0.879 9 N -0.197 5.197 10 C 0.225 3.775 11 O -0.465 6.465 12 C -0.089 4.089 13 N -0.285 5.285 14 C 0.064 3.936 15 H 0.128 0.872 16 C -0.039 4.039 17 C -0.112 4.112 18 C -0.130 4.130 19 C -0.134 4.134 20 C -0.062 4.062 21 Cl -0.048 7.048 22 C -0.103 4.103 23 C -0.034 4.034 24 C -0.195 4.195 25 C -0.093 4.093 26 C -0.198 4.198 27 C -0.058 4.058 28 N -0.180 5.180 29 H 0.082 0.918 30 H 0.226 0.774 31 H 0.110 0.890 32 H 0.067 0.933 33 H 0.176 0.824 34 H 0.146 0.854 35 H 0.147 0.853 36 H 0.146 0.854 37 H 0.150 0.850 38 H 0.157 0.843 39 H 0.154 0.846 40 H 0.151 0.849 41 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 0.169 -21.623 2.038 21.720 hybrid contribution -0.295 1.463 1.773 2.318 sum -0.126 -20.160 3.812 20.518 Atomic orbital electron populations 1.69610 1.05946 1.28220 1.50418 1.25266 0.95626 0.99741 0.97219 0.85860 0.79231 0.80767 0.78467 1.20340 1.20940 1.19390 1.19707 0.93395 0.82160 1.47674 0.87852 1.41846 1.09209 1.04560 1.64122 1.19698 0.88359 0.84578 0.84897 1.90545 1.13603 1.86967 1.55432 1.21857 0.94434 0.90798 1.01817 1.60328 1.18057 0.98811 1.51284 1.19358 0.96180 0.88292 0.89735 0.87239 1.19330 0.92809 0.95188 0.96607 1.21031 1.00101 0.94052 0.95976 1.20997 0.92759 0.99010 1.00194 1.20989 0.95826 0.98447 0.98176 1.20851 0.85083 0.98873 1.01441 1.98363 1.14399 1.98275 1.93790 1.20833 0.92772 0.96891 0.99768 1.22096 0.94410 0.90093 0.96754 1.22110 1.02143 1.01659 0.93570 1.21600 0.94633 0.96009 0.97024 1.22151 1.01374 0.95497 1.00775 1.22752 0.95937 0.99382 0.87725 1.67459 1.10577 1.16247 1.23690 0.91834 0.77444 0.89008 0.93344 0.82365 0.85411 0.85261 0.85373 0.85033 0.84296 0.84610 0.84869 0.82820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.12 13.05 55.50 0.72 -23.39 16 2 C 0.02 0.61 5.50 -17.46 -0.10 0.52 16 3 Si 0.93 20.80 29.55 -169.99 -5.02 15.78 16 4 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 5 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 6 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 7 C -0.30 -8.20 9.68 -14.93 -0.14 -8.35 16 8 H 0.10 2.97 7.16 -52.49 -0.38 2.60 16 9 N -0.56 -13.80 5.29 -10.96 -0.06 -13.86 16 10 C 0.44 9.96 7.82 -10.98 -0.09 9.88 16 11 O -0.58 -15.27 15.78 5.54 0.09 -15.18 16 12 C 0.04 0.72 5.34 -4.97 -0.03 0.69 16 13 N -0.65 -10.12 5.14 -110.46 -0.57 -10.68 16 14 C 0.18 2.30 2.67 -70.02 -0.19 2.11 16 15 H 0.11 1.34 7.66 -51.93 -0.40 0.94 16 16 C -0.04 -0.49 4.74 -104.63 -0.50 -0.99 16 17 C -0.09 -1.04 9.67 -39.58 -0.38 -1.42 16 18 C -0.11 -1.12 10.05 -39.59 -0.40 -1.52 16 19 C -0.12 -1.26 9.83 -39.55 -0.39 -1.65 16 20 C -0.04 -0.46 6.32 -39.50 -0.25 -0.71 16 21 Cl -0.08 -0.95 28.96 -51.86 -1.50 -2.45 16 22 C -0.08 -1.14 9.11 -39.55 -0.36 -1.50 16 23 C 0.11 1.36 6.08 -82.58 -0.50 0.85 16 24 C -0.17 -2.18 8.12 -39.44 -0.32 -2.50 16 25 C -0.07 -0.70 10.18 -39.28 -0.40 -1.10 16 26 C -0.18 -1.65 10.11 -39.44 -0.40 -2.05 16 27 C 0.10 1.01 11.18 -17.55 -0.20 0.81 16 28 N -0.47 -5.80 10.01 -9.47 -0.09 -5.90 16 29 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 30 H 0.39 9.24 7.90 -40.82 -0.32 8.91 16 31 H 0.09 1.41 8.05 -51.93 -0.42 1.00 16 32 H 0.05 0.73 6.65 -51.93 -0.35 0.39 16 33 H 0.35 5.65 5.72 -39.29 -0.22 5.43 16 34 H 0.13 1.21 8.04 -52.48 -0.42 0.79 16 35 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 36 H 0.13 1.14 8.06 -52.48 -0.42 0.71 16 37 H 0.13 1.88 7.24 -52.49 -0.38 1.50 16 38 H 0.14 1.86 5.20 -52.49 -0.27 1.59 16 39 H 0.14 1.17 8.06 -52.48 -0.42 0.75 16 40 H 0.13 0.86 8.06 -52.48 -0.42 0.44 16 41 H 0.15 1.12 8.06 -52.49 -0.42 0.69 16 LS Contribution 367.70 15.07 5.54 5.54 Total: -1.00 -31.50 367.70 -9.93 -41.43 By element: Atomic # 1 Polarization: 20.04 SS G_CDS: -4.41 Total: 15.63 kcal Atomic # 6 Polarization: -2.29 SS G_CDS: -4.63 Total: -6.92 kcal Atomic # 7 Polarization: -53.83 SS G_CDS: 0.00 Total: -53.83 kcal Atomic # 8 Polarization: -15.27 SS G_CDS: 0.09 Total: -15.18 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Atomic # 17 Polarization: -0.95 SS G_CDS: -1.50 Total: -2.45 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -31.50 -9.93 -41.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079111159.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.896 kcal (2) G-P(sol) polarization free energy of solvation -31.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.435 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds