Wall clock time and date at job start Tue Mar 31 2020 06:43:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47343 * 2 1 4 4 H 1.09006 * 109.47079 * 305.00393 * 3 2 1 5 5 C 1.53004 * 109.47417 * 64.99862 * 3 2 1 6 6 N 1.46495 * 109.47197 * 184.99975 * 3 2 1 7 7 N 1.40073 * 126.09379 * 300.02229 * 6 3 2 8 8 C 1.30833 * 108.41175 * 179.97438 * 7 6 3 9 9 C 1.39739 * 108.44550 * 359.97438 * 8 7 6 10 10 C 1.35814 * 126.09137 * 119.71294 * 6 3 2 11 11 N 1.39380 * 126.26506 * 0.02562 * 10 6 3 12 12 C 1.34770 * 119.99879 * 179.97438 * 11 10 6 13 13 O 1.21569 * 120.00426 * 0.02562 * 12 11 10 14 14 C 1.47825 * 120.00067 * 179.97438 * 12 11 10 15 15 C 1.39697 * 120.09960 * 359.72471 * 14 12 11 16 16 C 1.38036 * 120.03227 * 179.71629 * 15 14 12 17 17 C 1.38179 * 120.24723 * 0.56415 * 16 15 14 18 18 C 1.39191 * 120.20632 * 359.71347 * 17 16 15 19 19 S 1.76198 * 120.01985 * 179.97438 * 18 17 16 20 20 C 1.76201 * 100.00067 * 265.53131 * 19 18 17 21 21 H 1.08001 * 119.99940 * 5.11626 * 20 19 18 22 22 C 1.38728 * 119.99584 * 185.12005 * 20 19 18 23 23 N 1.31630 * 119.99229 * 179.97438 * 22 20 19 24 24 Si 1.86790 * 120.00402 * 359.97438 * 22 20 19 25 25 H 1.48496 * 109.47320 * 89.99840 * 24 22 20 26 26 H 1.48505 * 109.47291 * 209.99964 * 24 22 20 27 27 H 1.48500 * 109.47148 * 329.99524 * 24 22 20 28 28 C 1.38868 * 119.95818 * 0.02562 * 18 17 16 29 29 H 1.08996 * 109.47157 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.46655 * 300.00283 * 1 2 3 31 31 H 1.08994 * 109.46852 * 59.99507 * 1 2 3 32 32 H 1.09003 * 109.47039 * 119.99726 * 2 1 3 33 33 H 1.08997 * 109.47018 * 240.00160 * 2 1 3 34 34 H 1.09006 * 109.46544 * 59.99658 * 5 3 2 35 35 H 1.08996 * 109.47482 * 180.02562 * 5 3 2 36 36 H 1.09000 * 109.47222 * 300.00319 * 5 3 2 37 37 H 1.07993 * 125.78267 * 180.02562 * 8 7 6 38 38 H 1.07997 * 126.07353 * 179.97438 * 9 8 7 39 39 H 0.97002 * 119.99954 * 359.97438 * 11 10 6 40 40 H 1.07997 * 119.98172 * 359.97438 * 15 14 12 41 41 H 1.07994 * 119.87505 * 180.25380 * 16 15 14 42 42 H 1.07998 * 119.89617 * 179.74028 * 17 16 15 43 43 H 0.97002 * 119.99451 * 179.97438 * 23 22 20 44 44 H 1.07996 * 120.11956 * 180.02562 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6354 2.1266 1.3073 6 7 3.5001 1.4442 -0.1204 7 7 4.4023 0.8506 0.7716 8 6 5.6166 1.0603 0.3320 9 6 5.5365 1.7935 -0.8550 10 6 4.2198 2.0165 -1.1199 11 7 3.7048 2.7081 -2.2150 12 6 4.5393 3.2280 -3.1367 13 8 5.7412 3.0936 -3.0132 14 6 3.9931 3.9610 -4.2984 15 6 2.6121 4.1109 -4.4460 16 6 2.1038 4.8006 -5.5283 17 6 2.9560 5.3352 -6.4756 18 6 4.3335 5.1869 -6.3416 19 16 5.4156 5.8700 -7.5528 20 6 5.6383 4.4644 -8.5917 21 1 5.0805 3.5592 -8.4024 22 6 6.5301 4.5206 -9.6529 23 7 6.6968 3.4704 -10.4287 24 14 7.4943 6.0865 -9.9807 25 1 8.7750 6.0456 -9.2301 26 1 7.7760 6.1992 -11.4344 27 1 6.6985 7.2596 -9.5384 28 6 4.8543 4.4993 -5.2533 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 2.0700 1.5875 2.1492 35 1 1.9983 3.1544 1.3072 36 1 0.5490 2.1253 1.3969 37 1 6.5267 0.7232 0.8056 38 1 6.3708 2.1222 -1.4568 39 1 2.7458 2.8150 -2.3137 40 1 1.9420 3.6906 -3.7108 41 1 1.0359 4.9185 -5.6378 42 1 2.5520 5.8702 -7.3223 43 1 7.3201 3.5098 -11.1708 44 1 5.9227 4.3830 -5.1466 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079386416.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:44 Heat of formation + Delta-G solvation = 66.955101 kcal Electronic energy + Delta-G solvation = -26593.752026 eV Core-core repulsion = 22832.039892 eV Total energy + Delta-G solvation = -3761.712134 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.68152 -39.99652 -38.09518 -36.76515 -35.11248 -32.54724 -31.72726 -31.35355 -30.78158 -29.24977 -28.73142 -25.73252 -25.16465 -24.33624 -22.67955 -22.53888 -21.59720 -20.17123 -20.01053 -18.72480 -17.96879 -17.13094 -16.20085 -15.85881 -15.68929 -15.53836 -15.16532 -15.00440 -14.73727 -14.57167 -14.23495 -14.12443 -13.80686 -13.59541 -13.31516 -12.97119 -12.91005 -12.69366 -12.58595 -12.24039 -12.13068 -12.07436 -11.50331 -11.44771 -11.32228 -11.26730 -11.14633 -11.13026 -10.76326 -10.66987 -10.01432 -9.92574 -9.32259 -9.13049 -9.10224 -8.85926 -8.28948 -8.15254 -7.20348 -6.37539 -4.14151 0.83564 1.43406 1.75195 1.91553 2.69716 2.76719 2.87673 3.03575 3.24040 3.34802 3.43989 3.90588 3.98667 4.21701 4.34621 4.39234 4.49654 4.70365 4.79956 4.83648 4.85299 4.96995 4.99154 5.02591 5.03419 5.15772 5.27969 5.41221 5.46169 5.51771 5.53327 5.55039 5.62232 5.71982 5.78213 5.80970 5.87084 6.00161 6.10679 6.33716 6.41356 6.68051 6.69024 6.83053 6.94189 7.13091 7.65987 7.86469 7.90974 8.39419 9.06061 10.71809 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.017546 B = 0.002370 C = 0.002233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.403752 B =11809.396650 C =12534.793591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.131 4.131 3 C 0.161 3.839 4 H 0.089 0.911 5 C -0.161 4.161 6 N -0.387 5.387 7 N -0.291 5.291 8 C 0.058 3.942 9 C -0.279 4.279 10 C 0.308 3.692 11 N -0.650 5.650 12 C 0.573 3.427 13 O -0.495 6.495 14 C -0.151 4.151 15 C -0.086 4.086 16 C -0.137 4.137 17 C -0.046 4.046 18 C -0.084 4.084 19 S -0.108 6.108 20 C -0.511 4.511 21 H 0.092 0.908 22 C 0.096 3.904 23 N -0.874 5.874 24 Si 0.858 3.142 25 H -0.265 1.265 26 H -0.272 1.272 27 H -0.239 1.239 28 C -0.011 4.011 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.057 0.943 32 H 0.079 0.921 33 H 0.068 0.932 34 H 0.073 0.927 35 H 0.060 0.940 36 H 0.077 0.923 37 H 0.185 0.815 38 H 0.174 0.826 39 H 0.407 0.593 40 H 0.116 0.884 41 H 0.128 0.872 42 H 0.136 0.864 43 H 0.273 0.727 44 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.738 -2.285 20.817 25.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.170 4.170 3 C 0.059 3.941 4 H 0.107 0.893 5 C -0.219 4.219 6 N -0.176 5.176 7 N -0.112 5.112 8 C -0.128 4.128 9 C -0.310 4.310 10 C 0.089 3.911 11 N -0.299 5.299 12 C 0.362 3.638 13 O -0.368 6.368 14 C -0.157 4.157 15 C -0.105 4.105 16 C -0.156 4.156 17 C -0.067 4.067 18 C -0.194 4.194 19 S 0.125 5.875 20 C -0.658 4.658 21 H 0.110 0.890 22 C -0.114 4.114 23 N -0.510 5.510 24 Si 0.682 3.318 25 H -0.190 1.190 26 H -0.197 1.197 27 H -0.163 1.163 28 C -0.032 4.032 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.098 0.902 33 H 0.086 0.914 34 H 0.092 0.908 35 H 0.079 0.921 36 H 0.095 0.905 37 H 0.202 0.798 38 H 0.191 0.809 39 H 0.244 0.756 40 H 0.134 0.866 41 H 0.146 0.854 42 H 0.154 0.846 43 H 0.083 0.917 44 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -13.131 -1.870 21.449 25.218 hybrid contribution -0.127 -0.422 -0.941 1.039 sum -13.258 -2.291 20.508 24.528 Atomic orbital electron populations 1.21818 0.94376 1.02609 1.02212 1.21865 0.96402 0.94815 1.03872 1.21265 0.74749 0.98214 0.99847 0.89313 1.22170 1.02056 1.00917 0.96737 1.48954 1.05877 1.44900 1.17847 1.77333 0.99084 1.20654 1.14142 1.23761 0.95905 0.97786 0.95355 1.21727 0.94974 1.12085 1.02253 1.18145 0.91316 0.95890 0.85729 1.42849 1.10982 1.54380 1.21660 1.18375 0.85928 0.78028 0.81480 1.90740 1.14522 1.56540 1.75015 1.19569 0.94200 1.05225 0.96663 1.21139 0.93326 0.98128 0.97931 1.21050 0.99878 0.99815 0.94907 1.21966 0.92467 0.94989 0.97305 1.22239 0.97123 1.01306 0.98768 1.83127 1.59445 1.20458 1.24423 1.22231 1.30198 0.98738 1.14639 0.89045 1.24745 0.95345 0.96600 0.94667 1.69927 1.35270 1.28764 1.17054 0.86737 0.82040 0.84213 0.78797 1.18955 1.19743 1.16341 1.21923 1.00592 0.90620 0.90105 0.91889 0.92007 0.92407 0.90234 0.91373 0.90815 0.92104 0.90469 0.79831 0.80924 0.75610 0.86572 0.85372 0.84646 0.91735 0.83823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 9.67 37.16 0.36 -0.39 16 2 C -0.13 -0.95 5.66 -26.73 -0.15 -1.10 16 3 C 0.16 1.26 3.17 -67.93 -0.22 1.05 16 4 H 0.09 0.53 6.84 -51.93 -0.36 0.18 16 5 C -0.16 -1.08 9.21 37.16 0.34 -0.74 16 6 N -0.39 -4.39 3.30 -53.78 -0.18 -4.57 16 7 N -0.29 -3.64 12.42 30.60 0.38 -3.26 16 8 C 0.06 0.70 12.00 -17.42 -0.21 0.50 16 9 C -0.28 -3.94 9.65 -39.77 -0.38 -4.33 16 10 C 0.31 4.03 7.68 -152.74 -1.17 2.86 16 11 N -0.65 -7.69 5.36 -12.20 -0.07 -7.76 16 12 C 0.57 8.64 7.74 -12.34 -0.10 8.55 16 13 O -0.50 -9.01 13.47 5.31 0.07 -8.94 16 14 C -0.15 -2.30 5.87 -105.00 -0.62 -2.92 16 15 C -0.09 -1.03 9.54 -39.11 -0.37 -1.40 16 16 C -0.14 -1.71 10.02 -39.68 -0.40 -2.11 16 17 C -0.05 -0.75 9.79 -39.25 -0.38 -1.13 16 18 C -0.08 -1.64 5.45 -38.99 -0.21 -1.85 16 19 S -0.11 -2.53 19.38 -107.50 -2.08 -4.62 16 20 C -0.51 -14.28 10.01 30.91 0.31 -13.97 16 21 H 0.09 2.78 8.02 -52.49 -0.42 2.35 16 22 C 0.10 2.70 5.50 -17.46 -0.10 2.61 16 23 N -0.87 -25.85 13.97 55.49 0.78 -25.08 16 24 Si 0.86 20.60 27.73 -169.99 -4.71 15.89 16 25 H -0.26 -6.32 7.11 56.52 0.40 -5.92 16 26 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 27 H -0.24 -5.54 6.74 56.52 0.38 -5.16 16 28 C -0.01 -0.20 9.34 -38.92 -0.36 -0.56 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.25 6.57 -51.93 -0.34 -0.09 16 31 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.08 0.35 6.57 -51.93 -0.34 0.01 16 37 H 0.18 1.61 8.06 -52.49 -0.42 1.19 16 38 H 0.17 2.72 5.83 -52.49 -0.31 2.41 16 39 H 0.41 3.41 5.58 -40.82 -0.23 3.18 16 40 H 0.12 0.89 6.40 -52.49 -0.34 0.56 16 41 H 0.13 1.17 8.06 -52.49 -0.42 0.74 16 42 H 0.14 2.05 8.06 -52.49 -0.42 1.63 16 43 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 44 H 0.14 2.87 7.65 -52.49 -0.40 2.47 16 LS Contribution 381.66 15.07 5.75 5.75 Total: -1.00 -33.13 381.66 -9.41 -42.54 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -5.69 Total: 5.00 kcal Atomic # 6 Polarization: -11.29 SS G_CDS: -3.66 Total: -14.96 kcal Atomic # 7 Polarization: -41.58 SS G_CDS: 0.91 Total: -40.67 kcal Atomic # 8 Polarization: -9.01 SS G_CDS: 0.07 Total: -8.94 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -4.71 Total: 15.89 kcal Atomic # 16 Polarization: -2.53 SS G_CDS: -2.08 Total: -4.62 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.13 -9.41 -42.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079386416.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.498 kcal (2) G-P(sol) polarization free energy of solvation -33.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.543 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds