Wall clock time and date at job start Tue Mar 31 2020 06:43:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47682 * 2 1 4 4 H 1.09001 * 109.46942 * 54.99885 * 3 2 1 5 5 C 1.53003 * 109.46916 * 295.00395 * 3 2 1 6 6 N 1.46492 * 109.47823 * 175.00267 * 3 2 1 7 7 N 1.40079 * 126.09481 * 60.01878 * 6 3 2 8 8 C 1.30829 * 108.41258 * 179.97438 * 7 6 3 9 9 C 1.39729 * 108.44196 * 359.74706 * 8 7 6 10 10 C 1.35813 * 126.09332 * 240.00509 * 6 3 2 11 11 N 1.39372 * 126.26696 * 0.02562 * 10 6 3 12 12 C 1.34774 * 120.00410 * 180.02562 * 11 10 6 13 13 O 1.21570 * 119.99526 * 0.02562 * 12 11 10 14 14 C 1.47820 * 120.00066 * 179.97438 * 12 11 10 15 15 C 1.39691 * 120.10282 * 359.97438 * 14 12 11 16 16 C 1.38038 * 120.03730 * 180.02562 * 15 14 12 17 17 C 1.38186 * 120.24366 * 359.71660 * 16 15 14 18 18 C 1.39188 * 120.20504 * 0.56033 * 17 16 15 19 19 S 1.76194 * 120.01963 * 179.71430 * 18 17 16 20 20 C 1.76196 * 100.00182 * 265.25184 * 19 18 17 21 21 H 1.08000 * 120.00393 * 5.12593 * 20 19 18 22 22 C 1.38736 * 120.00006 * 185.12109 * 20 19 18 23 23 N 1.31616 * 119.99932 * 359.97438 * 22 20 19 24 24 Si 1.86808 * 119.99686 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47166 * 359.97438 * 24 22 20 26 26 H 1.48499 * 109.46857 * 120.00071 * 24 22 20 27 27 H 1.48498 * 109.46876 * 239.99864 * 24 22 20 28 28 C 1.38875 * 119.95888 * 359.44616 * 18 17 16 29 29 H 1.09001 * 109.47195 * 59.99650 * 1 2 3 30 30 H 1.08996 * 109.47145 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46738 * 300.00044 * 1 2 3 32 32 H 1.09003 * 109.46738 * 239.99956 * 2 1 3 33 33 H 1.09001 * 109.47195 * 120.00350 * 2 1 3 34 34 H 1.09004 * 109.47522 * 179.97438 * 5 3 2 35 35 H 1.09001 * 109.46899 * 299.99516 * 5 3 2 36 36 H 1.09000 * 109.47618 * 59.99840 * 5 3 2 37 37 H 1.08001 * 125.77918 * 179.97438 * 8 7 6 38 38 H 1.08008 * 126.06978 * 180.30486 * 9 8 7 39 39 H 0.97010 * 119.99584 * 0.02562 * 11 10 6 40 40 H 1.08002 * 119.98390 * 359.97438 * 15 14 12 41 41 H 1.08001 * 119.87929 * 180.02562 * 16 15 14 42 42 H 1.07998 * 119.89930 * 180.29515 * 17 16 15 43 43 H 0.97004 * 119.99833 * 179.97438 * 23 22 20 44 44 H 1.07999 * 120.11881 * 180.29732 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9814 0.8418 5 6 1.6353 2.1265 -1.3073 6 7 3.5001 1.4442 0.1203 7 7 4.4024 0.8513 -0.7722 8 6 5.6166 1.0618 -0.3330 9 6 5.5368 1.8002 0.8506 10 6 4.2200 2.0212 1.1169 11 7 3.7054 2.7173 2.2092 12 6 4.5401 3.2417 3.1282 13 8 5.7421 3.1078 3.0042 14 6 3.9943 3.9805 4.2863 15 6 2.6136 4.1370 4.4300 16 6 2.1053 4.8277 5.5117 17 6 2.9576 5.3618 6.4593 18 6 4.3352 5.2169 6.3232 19 16 5.4176 5.9063 7.5304 20 6 5.7849 7.4507 6.7657 21 1 5.2852 7.7326 5.8507 22 6 6.7159 8.3046 7.3391 23 7 7.3244 7.9613 8.4545 24 14 7.1046 9.9422 6.5287 25 1 6.2915 10.0894 5.2949 26 1 6.7849 11.0474 7.4677 27 1 8.5471 9.9914 6.1791 28 6 4.8557 4.5237 5.2382 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.9983 3.1543 -1.3073 35 1 2.0699 1.5874 -2.1492 36 1 0.5490 2.1253 -1.3969 37 1 6.5268 0.7253 -0.8071 38 1 6.3714 2.1344 1.4491 39 1 2.7463 2.8245 2.3078 40 1 1.9434 3.7181 3.6939 41 1 1.0374 4.9468 5.6205 42 1 2.5537 5.8970 7.3059 43 1 7.9757 8.5582 8.8552 44 1 5.9240 4.4056 5.1326 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079386417.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:49 Heat of formation + Delta-G solvation = 65.506348 kcal Electronic energy + Delta-G solvation = -26577.519255 eV Core-core repulsion = 22815.744299 eV Total energy + Delta-G solvation = -3761.774957 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.67046 -39.95620 -38.02046 -36.76606 -35.08945 -32.55629 -31.71814 -31.29334 -30.68653 -29.23738 -28.71339 -25.62253 -25.16559 -24.28289 -22.58349 -22.51568 -21.55372 -20.15294 -19.96566 -18.68930 -17.92822 -17.14314 -16.15753 -15.84508 -15.67207 -15.48313 -15.08175 -14.89380 -14.74579 -14.48348 -14.22723 -14.11927 -13.80836 -13.55851 -13.32582 -13.02121 -12.90094 -12.68781 -12.46050 -12.24107 -12.12032 -11.78732 -11.49269 -11.29454 -11.25790 -11.21192 -11.14004 -11.10961 -10.77592 -10.68101 -10.02995 -9.89717 -9.22318 -9.13985 -9.09337 -8.79441 -8.17766 -8.10595 -6.77872 -6.33573 -4.08274 0.89413 1.51490 1.76940 1.92738 2.72607 2.83744 3.03544 3.16082 3.18514 3.25795 3.39626 3.96250 3.98818 4.17934 4.34440 4.42545 4.50585 4.70315 4.83256 4.87392 4.97182 5.02514 5.03616 5.06998 5.16747 5.29144 5.40890 5.42776 5.46972 5.51991 5.54415 5.59169 5.70914 5.75311 5.80859 5.81835 5.89241 6.05427 6.14267 6.41156 6.48588 6.69649 6.77373 6.85966 7.02632 7.15447 7.53092 7.66686 7.93748 8.27880 9.12608 10.73187 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.015987 B = 0.002391 C = 0.002247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.965053 B =11707.640424 C =12459.432703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.131 4.131 3 C 0.161 3.839 4 H 0.089 0.911 5 C -0.162 4.162 6 N -0.387 5.387 7 N -0.291 5.291 8 C 0.058 3.942 9 C -0.280 4.280 10 C 0.309 3.691 11 N -0.651 5.651 12 C 0.572 3.428 13 O -0.496 6.496 14 C -0.153 4.153 15 C -0.091 4.091 16 C -0.138 4.138 17 C -0.050 4.050 18 C -0.105 4.105 19 S -0.032 6.032 20 C -0.521 4.521 21 H 0.077 0.923 22 C 0.074 3.926 23 N -0.869 5.869 24 Si 0.921 3.079 25 H -0.270 1.270 26 H -0.279 1.279 27 H -0.278 1.278 28 C -0.013 4.013 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.057 0.943 32 H 0.079 0.921 33 H 0.067 0.933 34 H 0.060 0.940 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.185 0.815 38 H 0.174 0.826 39 H 0.407 0.593 40 H 0.114 0.886 41 H 0.126 0.874 42 H 0.134 0.866 43 H 0.270 0.730 44 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.844 -13.179 -15.468 25.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.169 4.169 3 C 0.059 3.941 4 H 0.107 0.893 5 C -0.219 4.219 6 N -0.176 5.176 7 N -0.113 5.113 8 C -0.128 4.128 9 C -0.311 4.311 10 C 0.090 3.910 11 N -0.299 5.299 12 C 0.362 3.638 13 O -0.369 6.369 14 C -0.158 4.158 15 C -0.110 4.110 16 C -0.158 4.158 17 C -0.071 4.071 18 C -0.215 4.215 19 S 0.203 5.797 20 C -0.668 4.668 21 H 0.095 0.905 22 C -0.136 4.136 23 N -0.504 5.504 24 Si 0.747 3.253 25 H -0.195 1.195 26 H -0.205 1.205 27 H -0.204 1.204 28 C -0.035 4.035 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.098 0.902 33 H 0.086 0.914 34 H 0.079 0.921 35 H 0.092 0.908 36 H 0.095 0.905 37 H 0.202 0.798 38 H 0.191 0.809 39 H 0.244 0.756 40 H 0.132 0.868 41 H 0.144 0.856 42 H 0.152 0.848 43 H 0.080 0.920 44 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -14.271 -14.099 -15.218 25.180 hybrid contribution -0.297 1.912 -0.981 2.169 sum -14.568 -12.187 -16.199 24.963 Atomic orbital electron populations 1.21819 0.94391 1.02573 1.02242 1.21857 0.96378 0.94824 1.03825 1.21260 0.74770 0.98179 0.99866 0.89313 1.22174 1.02054 1.00974 0.96730 1.48952 1.05857 1.44864 1.17931 1.77331 0.99090 1.20848 1.13993 1.23758 0.95901 0.97798 0.95354 1.21726 0.94975 1.11973 1.02421 1.18153 0.91312 0.95709 0.85865 1.42875 1.10999 1.54102 1.21947 1.18425 0.85915 0.77977 0.81509 1.90736 1.14528 1.56712 1.74926 1.19596 0.94256 1.05276 0.96691 1.21096 0.93311 0.98621 0.97951 1.21062 0.99788 0.99840 0.95100 1.22026 0.92775 0.94762 0.97582 1.22898 0.97955 1.00250 1.00441 1.83662 1.54531 1.19490 1.22036 1.22871 1.28646 1.01727 1.13565 0.90525 1.25009 0.94564 0.98963 0.95016 1.69988 1.25682 1.37001 1.17744 0.86063 0.78479 0.81504 0.79245 1.19490 1.20452 1.20374 1.21982 1.00402 0.90754 0.90342 0.91983 0.91909 0.92421 0.90242 0.91416 0.92076 0.90816 0.90472 0.79842 0.80922 0.75621 0.86778 0.85613 0.84814 0.92032 0.83965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 9.67 37.16 0.36 -0.37 16 2 C -0.13 -0.92 5.66 -26.74 -0.15 -1.07 16 3 C 0.16 1.27 3.17 -67.94 -0.22 1.06 16 4 H 0.09 0.54 6.84 -51.93 -0.36 0.19 16 5 C -0.16 -1.13 9.21 37.16 0.34 -0.79 16 6 N -0.39 -4.42 3.30 -53.79 -0.18 -4.60 16 7 N -0.29 -3.66 12.42 30.59 0.38 -3.28 16 8 C 0.06 0.71 12.00 -17.42 -0.21 0.50 16 9 C -0.28 -3.97 9.65 -39.78 -0.38 -4.36 16 10 C 0.31 4.07 7.68 -152.75 -1.17 2.89 16 11 N -0.65 -7.81 5.36 -12.21 -0.07 -7.87 16 12 C 0.57 8.76 7.74 -12.34 -0.10 8.67 16 13 O -0.50 -9.12 13.47 5.30 0.07 -9.05 16 14 C -0.15 -2.38 5.87 -105.00 -0.62 -3.00 16 15 C -0.09 -1.12 9.54 -39.11 -0.37 -1.49 16 16 C -0.14 -1.79 10.02 -39.67 -0.40 -2.19 16 17 C -0.05 -0.84 9.79 -39.25 -0.38 -1.22 16 18 C -0.10 -2.12 5.45 -38.99 -0.21 -2.33 16 19 S -0.03 -0.79 21.40 -107.50 -2.30 -3.09 16 20 C -0.52 -14.31 9.46 30.92 0.29 -14.02 16 21 H 0.08 2.09 7.79 -52.49 -0.41 1.68 16 22 C 0.07 2.03 5.49 -17.46 -0.10 1.93 16 23 N -0.87 -24.97 13.22 55.49 0.73 -24.24 16 24 Si 0.92 21.10 29.55 -169.99 -5.02 16.08 16 25 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 26 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 27 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 28 C -0.01 -0.25 9.34 -38.91 -0.36 -0.61 16 29 H 0.06 0.25 6.57 -51.93 -0.34 -0.09 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.08 0.36 6.57 -51.93 -0.34 0.02 16 37 H 0.18 1.62 8.06 -52.49 -0.42 1.20 16 38 H 0.17 2.73 5.83 -52.48 -0.31 2.43 16 39 H 0.41 3.50 5.58 -40.82 -0.23 3.27 16 40 H 0.11 0.92 6.40 -52.49 -0.34 0.59 16 41 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 42 H 0.13 2.11 8.06 -52.49 -0.42 1.69 16 43 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 44 H 0.14 2.93 7.65 -52.49 -0.40 2.53 16 LS Contribution 384.35 15.07 5.79 5.79 Total: -1.00 -32.77 384.35 -9.93 -42.70 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -5.66 Total: 3.96 kcal Atomic # 6 Polarization: -12.72 SS G_CDS: -3.68 Total: -16.39 kcal Atomic # 7 Polarization: -40.86 SS G_CDS: 0.87 Total: -39.99 kcal Atomic # 8 Polarization: -9.12 SS G_CDS: 0.07 Total: -9.05 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 16 Polarization: -0.79 SS G_CDS: -2.30 Total: -3.09 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -32.77 -9.93 -42.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079386417.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.207 kcal (2) G-P(sol) polarization free energy of solvation -32.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.700 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds