Wall clock time and date at job start Tue Mar 31 2020 05:58:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46905 * 110.99636 * 2 1 4 4 C 1.46897 * 111.00128 * 123.95407 * 2 1 3 5 5 C 1.53000 * 109.47144 * 66.05113 * 4 2 1 6 6 N 1.46504 * 109.46891 * 180.02562 * 5 4 2 7 7 C 1.36804 * 125.06978 * 264.97006 * 6 5 4 8 8 C 1.34240 * 109.93784 * 180.02562 * 7 6 5 9 9 C 1.46497 * 107.01903 * 0.02562 * 8 7 6 10 10 C 1.39651 * 133.92624 * 179.97438 * 9 8 7 11 11 C 1.38185 * 119.58998 * 180.02562 * 10 9 8 12 12 N 1.40174 * 119.88027 * 180.02562 * 11 10 9 13 13 C 1.34771 * 120.00386 * 146.72194 * 12 11 10 14 14 O 1.21592 * 119.99953 * 354.62844 * 13 12 11 15 15 N 1.34780 * 120.00372 * 174.63300 * 13 12 11 16 16 C 1.46508 * 119.99616 * 359.97438 * 15 13 12 17 17 C 1.46498 * 120.00152 * 180.27316 * 15 13 12 18 18 C 1.50698 * 109.47287 * 269.72503 * 17 15 13 19 19 H 1.07999 * 120.00006 * 359.97438 * 18 17 15 20 20 C 1.37869 * 119.99957 * 180.02562 * 18 17 15 21 21 N 1.31513 * 120.00166 * 359.97438 * 20 18 17 22 22 Si 1.86807 * 120.00087 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.46839 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.47048 * 119.99855 * 22 20 18 25 25 H 1.48495 * 109.46975 * 240.00083 * 22 20 18 26 26 C 1.39392 * 120.23664 * 0.27468 * 11 10 9 27 27 C 1.37645 * 120.60980 * 359.44466 * 26 11 10 28 28 C 1.37893 * 125.07352 * 84.99854 * 6 5 4 29 29 H 1.09003 * 109.46933 * 296.03989 * 1 2 3 30 30 H 1.08997 * 109.47393 * 56.04666 * 1 2 3 31 31 H 1.09003 * 109.46892 * 176.04573 * 1 2 3 32 32 H 1.09006 * 109.46755 * 183.95652 * 3 2 1 33 33 H 1.09000 * 109.47121 * 303.95606 * 3 2 1 34 34 H 1.09000 * 109.46963 * 63.95701 * 3 2 1 35 35 H 1.08994 * 109.47470 * 306.04411 * 4 2 1 36 36 H 1.09002 * 109.46699 * 186.04554 * 4 2 1 37 37 H 1.09002 * 109.47506 * 59.99985 * 5 4 2 38 38 H 1.09002 * 109.46866 * 299.99338 * 5 4 2 39 39 H 1.08002 * 125.02746 * 0.04630 * 7 6 5 40 40 H 1.08005 * 126.48748 * 179.97438 * 8 7 6 41 41 H 1.08001 * 120.20511 * 0.02562 * 10 9 8 42 42 H 0.97004 * 119.99656 * 326.71918 * 12 11 10 43 43 H 1.08997 * 109.46393 * 90.00390 * 16 15 13 44 44 H 1.08997 * 109.46437 * 210.00089 * 16 15 13 45 45 H 1.08994 * 109.46828 * 329.99956 * 16 15 13 46 46 H 1.09000 * 109.47137 * 29.72644 * 17 15 13 47 47 H 1.08998 * 109.46856 * 149.71917 * 17 15 13 48 48 H 0.97006 * 120.00002 * 180.02562 * 21 20 18 49 49 H 1.08000 * 119.69316 * 179.72686 * 26 11 10 50 50 H 1.07999 * 119.99553 * 180.25328 * 27 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 1.6316 -2.2426 0.9702 6 7 2.1561 -3.0064 2.1051 7 6 3.3523 -3.6702 2.1202 8 6 3.5297 -4.2667 3.3096 9 6 2.3504 -3.9605 4.1231 10 6 1.9572 -4.2902 5.4219 11 6 0.7477 -3.8298 5.9063 12 7 0.3473 -4.1566 7.2092 13 6 -0.3810 -3.2811 7.9300 14 8 -0.6079 -2.1709 7.4890 15 7 -0.8577 -3.6360 9.1397 16 6 -0.5847 -4.9739 9.6708 17 6 -1.6544 -2.6864 9.9205 18 6 -0.7435 -1.8740 10.8044 19 1 0.3222 -2.0480 10.7866 20 6 -1.2708 -0.9095 11.6365 21 7 -2.5686 -0.6980 11.6585 22 14 -0.1416 0.0981 12.7316 23 1 1.2644 -0.3304 12.5204 24 1 -0.2773 1.5373 12.3918 25 1 -0.5143 -0.1121 14.1536 26 6 -0.0779 -3.0459 5.1020 27 6 0.3033 -2.7108 3.8225 28 6 1.5177 -3.1639 3.3171 29 1 -0.3633 0.4512 0.9234 30 1 -0.3634 0.5739 -0.8524 31 1 -0.3633 -1.0253 -0.0709 32 1 3.0828 1.3433 -0.0709 33 1 1.5897 1.9164 -0.8524 34 1 1.7043 1.8724 0.9233 35 1 1.5612 -0.3873 2.0628 36 1 3.0797 -0.6610 1.1755 37 1 2.0660 -2.6214 0.0450 38 1 0.5473 -2.3476 0.9323 39 1 4.0505 -3.7083 1.2972 40 1 4.3804 -4.8606 3.6097 41 1 2.5945 -4.9012 6.0440 42 1 0.5944 -5.0129 7.5921 43 1 0.3421 -4.9549 10.2440 44 1 -1.4059 -5.2824 10.3177 45 1 -0.4874 -5.6794 8.8457 46 1 -2.1926 -2.0218 9.2447 47 1 -2.3679 -3.2322 10.5378 48 1 -2.9395 -0.0190 12.2437 49 1 -1.0234 -2.6945 5.4879 50 1 -0.3423 -2.0996 3.2094 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085587961.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:30 Heat of formation + Delta-G solvation = 59.164775 kcal Electronic energy + Delta-G solvation = -29518.114799 eV Core-core repulsion = 25546.863737 eV Total energy + Delta-G solvation = -3971.251062 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.30988 -39.77259 -38.04557 -36.95102 -34.78920 -33.84186 -33.12759 -32.44545 -30.23215 -28.50718 -28.20836 -27.97847 -27.41615 -25.72716 -24.55080 -23.12461 -22.64261 -21.69451 -21.14979 -20.13631 -19.27892 -17.68698 -17.23410 -16.86515 -16.52560 -15.92115 -15.87462 -15.62837 -15.11646 -15.02309 -14.60521 -14.28015 -14.21322 -14.06137 -13.65033 -13.43440 -13.05266 -13.00082 -12.84159 -12.73288 -12.60189 -12.39938 -12.25497 -12.14763 -12.10662 -12.06422 -11.93624 -11.47823 -11.28255 -11.18752 -10.84699 -10.78342 -10.56896 -10.12661 -9.78461 -9.58357 -9.29690 -9.22709 -8.86007 -8.41508 -7.79057 -7.67531 -7.21982 -6.02214 -4.06285 1.25340 1.76851 2.63297 2.77142 3.27940 3.31532 3.39154 3.44752 3.63045 3.79382 4.22148 4.36968 4.42709 4.54844 4.57936 4.69735 4.79473 4.83829 4.94098 5.03114 5.07769 5.16320 5.17365 5.30827 5.31776 5.44478 5.48272 5.50199 5.52806 5.54503 5.59879 5.66529 5.76642 5.91233 5.97190 6.13220 6.23036 6.35442 6.48701 6.51006 6.54068 6.75233 6.84314 6.91325 7.05812 7.31486 7.37218 7.44503 7.53718 7.72145 7.96360 8.25717 8.62962 8.95004 9.29502 9.59193 11.05728 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.011644 B = 0.002399 C = 0.002153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2404.067133 B =11670.998860 C =12999.298554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.545 5.545 3 C 0.024 3.976 4 C 0.035 3.965 5 C 0.117 3.883 6 N -0.486 5.486 7 C 0.049 3.951 8 C -0.207 4.207 9 C -0.087 4.087 10 C -0.117 4.117 11 C 0.163 3.837 12 N -0.696 5.696 13 C 0.698 3.302 14 O -0.570 6.570 15 N -0.614 5.614 16 C 0.085 3.915 17 C 0.260 3.740 18 C -0.524 4.524 19 H 0.057 0.943 20 C 0.060 3.940 21 N -0.896 5.896 22 Si 0.898 3.102 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.284 1.284 26 C -0.091 4.091 27 C -0.113 4.113 28 C 0.078 3.922 29 H 0.031 0.969 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.029 0.971 35 H 0.045 0.955 36 H 0.080 0.920 37 H 0.095 0.905 38 H 0.084 0.916 39 H 0.164 0.836 40 H 0.143 0.857 41 H 0.122 0.878 42 H 0.400 0.600 43 H 0.050 0.950 44 H 0.072 0.928 45 H 0.050 0.950 46 H 0.045 0.955 47 H 0.034 0.966 48 H 0.262 0.738 49 H 0.141 0.859 50 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.404 -7.284 -23.334 26.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.269 5.269 3 C -0.124 4.124 4 C -0.094 4.094 5 C -0.005 4.005 6 N -0.171 5.171 7 C -0.075 4.075 8 C -0.233 4.233 9 C -0.092 4.092 10 C -0.139 4.139 11 C 0.066 3.934 12 N -0.345 5.345 13 C 0.400 3.600 14 O -0.446 6.446 15 N -0.349 5.349 16 C -0.059 4.059 17 C 0.140 3.860 18 C -0.563 4.563 19 H 0.075 0.925 20 C -0.142 4.142 21 N -0.535 5.535 22 Si 0.726 3.274 23 H -0.198 1.198 24 H -0.209 1.209 25 H -0.210 1.210 26 C -0.112 4.112 27 C -0.134 4.134 28 C -0.027 4.027 29 H 0.050 0.950 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.048 0.952 35 H 0.064 0.936 36 H 0.099 0.901 37 H 0.114 0.886 38 H 0.102 0.898 39 H 0.181 0.819 40 H 0.161 0.839 41 H 0.140 0.860 42 H 0.237 0.763 43 H 0.068 0.932 44 H 0.091 0.909 45 H 0.068 0.932 46 H 0.063 0.937 47 H 0.052 0.948 48 H 0.072 0.928 49 H 0.159 0.841 50 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 9.050 -6.395 -24.150 26.571 hybrid contribution 0.515 0.648 1.715 1.904 sum 9.564 -5.747 -22.435 25.057 Atomic orbital electron populations 1.22517 0.87083 1.02543 1.01129 1.61962 1.08332 1.14300 1.42344 1.22395 1.00820 0.88290 1.00919 1.22541 1.01121 0.93319 0.92410 1.21636 1.00323 0.90545 0.88009 1.43832 1.17157 1.44634 1.11444 1.21704 0.88388 0.97948 0.99498 1.21588 0.99591 1.08385 0.93707 1.18827 0.95511 1.01145 0.93708 1.20071 0.94333 1.04601 0.94905 1.17229 0.92933 0.99219 0.84002 1.42954 1.57482 1.20522 1.13590 1.15906 0.79237 0.83745 0.81131 1.90896 1.62886 1.19865 1.70923 1.47492 1.55236 1.15241 1.16939 1.21582 1.01916 0.84000 0.98437 1.19258 0.89847 0.86950 0.89921 1.21497 0.93983 1.18884 1.21915 0.92457 1.24925 0.95138 0.96884 0.97213 1.69940 1.10812 1.33707 1.39081 0.86446 0.80890 0.80150 0.79962 1.19831 1.20892 1.20987 1.20941 1.00435 0.98252 0.91599 1.19799 0.94427 1.03219 0.95983 1.18209 0.95935 1.02377 0.86174 0.95006 0.91038 0.91095 0.91224 0.91043 0.95225 0.93639 0.90120 0.88630 0.89758 0.81893 0.83903 0.85969 0.76330 0.93184 0.90925 0.93159 0.93702 0.94773 0.92803 0.84116 0.86668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.32 60.06 0.56 0.67 16 2 N -0.55 -4.33 5.02 -251.25 -1.26 -5.59 16 3 C 0.02 0.17 9.57 60.07 0.57 0.74 16 4 C 0.04 0.31 5.28 -3.83 -0.02 0.28 16 5 C 0.12 0.97 5.93 -4.04 -0.02 0.95 16 6 N -0.49 -5.27 2.78 -114.38 -0.32 -5.59 16 7 C 0.05 0.48 11.27 -16.74 -0.19 0.29 16 8 C -0.21 -2.33 11.08 -37.67 -0.42 -2.74 16 9 C -0.09 -1.22 6.37 -105.14 -0.67 -1.89 16 10 C -0.12 -1.70 10.01 -39.07 -0.39 -2.09 16 11 C 0.16 2.70 6.27 -83.63 -0.52 2.18 16 12 N -0.70 -11.77 5.18 -14.20 -0.07 -11.85 16 13 C 0.70 15.21 8.01 -86.92 -0.70 14.52 16 14 O -0.57 -14.77 13.61 5.29 0.07 -14.70 16 15 N -0.61 -13.25 2.86 -188.74 -0.54 -13.79 16 16 C 0.09 1.34 10.20 59.85 0.61 1.95 16 17 C 0.26 6.85 5.21 -5.20 -0.03 6.82 16 18 C -0.52 -15.09 9.39 -34.44 -0.32 -15.41 16 19 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 20 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 21 N -0.90 -26.83 13.29 55.43 0.74 -26.09 16 22 Si 0.90 22.23 29.54 -169.99 -5.02 17.21 16 23 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 24 H -0.28 -7.01 7.11 56.52 0.40 -6.60 16 25 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 26 C -0.09 -1.56 8.62 -39.37 -0.34 -1.90 16 27 C -0.11 -1.66 9.97 -39.47 -0.39 -2.05 16 28 C 0.08 1.07 6.81 -83.91 -0.57 0.50 16 29 H 0.03 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.07 0.44 8.12 -51.93 -0.42 0.01 16 31 H 0.07 0.46 6.47 -51.93 -0.34 0.12 16 32 H 0.07 0.45 8.12 -51.93 -0.42 0.03 16 33 H 0.07 0.42 8.12 -51.93 -0.42 0.00 16 34 H 0.03 0.23 8.14 -51.93 -0.42 -0.20 16 35 H 0.05 0.49 8.12 -51.93 -0.42 0.07 16 36 H 0.08 0.70 8.06 -51.93 -0.42 0.28 16 37 H 0.10 0.64 8.12 -51.93 -0.42 0.22 16 38 H 0.08 0.68 6.55 -51.93 -0.34 0.34 16 39 H 0.16 1.00 8.06 -52.49 -0.42 0.58 16 40 H 0.14 1.29 8.06 -52.48 -0.42 0.87 16 41 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 42 H 0.40 5.39 6.63 -40.82 -0.27 5.11 16 43 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.07 1.09 7.89 -51.93 -0.41 0.68 16 45 H 0.05 0.61 6.45 -51.93 -0.33 0.27 16 46 H 0.04 1.33 7.42 -51.93 -0.39 0.94 16 47 H 0.03 0.90 7.89 -51.93 -0.41 0.49 16 48 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 49 H 0.14 2.68 6.41 -52.49 -0.34 2.34 16 50 H 0.12 1.46 8.06 -52.49 -0.42 1.03 16 LS Contribution 409.50 15.07 6.17 6.17 Total: -1.00 -35.30 409.50 -11.03 -46.33 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: -7.85 Total: 3.43 kcal Atomic # 6 Polarization: 7.40 SS G_CDS: -2.94 Total: 4.46 kcal Atomic # 7 Polarization: -61.45 SS G_CDS: -1.46 Total: -62.91 kcal Atomic # 8 Polarization: -14.77 SS G_CDS: 0.07 Total: -14.70 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -35.30 -11.03 -46.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085587961.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.494 kcal (2) G-P(sol) polarization free energy of solvation -35.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.329 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds