Wall clock time and date at job start Tue Mar 31 2020 05:58:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46901 * 111.00143 * 2 1 4 4 C 1.46904 * 110.99837 * 123.95420 * 2 1 3 5 5 C 1.53000 * 109.46982 * 66.04445 * 4 2 1 6 6 C 1.53000 * 109.47014 * 179.97438 * 5 4 2 7 7 N 1.46490 * 109.47517 * 180.02562 * 6 5 4 8 8 C 1.46497 * 120.00283 * 269.72969 * 7 6 5 9 9 C 1.50703 * 109.47337 * 270.27282 * 8 7 6 10 10 H 1.08005 * 119.99355 * 359.97438 * 9 8 7 11 11 C 1.37872 * 120.00104 * 179.97438 * 9 8 7 12 12 N 1.31515 * 120.00177 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 119.99828 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.47082 * 0.02562 * 13 11 9 15 15 H 1.48501 * 109.46777 * 120.00206 * 13 11 9 16 16 H 1.48501 * 109.47196 * 239.99898 * 13 11 9 17 17 C 1.34780 * 120.00078 * 90.00068 * 7 6 5 18 18 O 1.21597 * 119.99661 * 359.72452 * 17 7 6 19 19 N 1.34779 * 120.00226 * 179.73197 * 17 7 6 20 20 C 1.40181 * 119.99674 * 174.64262 * 19 17 7 21 21 C 1.39393 * 119.88232 * 326.44221 * 20 19 17 22 22 C 1.37640 * 120.60448 * 179.72298 * 21 20 19 23 23 C 1.39118 * 120.02046 * 0.55497 * 22 21 20 24 24 N 1.37888 * 133.34424 * 179.74109 * 23 22 21 25 25 H 0.97005 * 125.07023 * 0.02562 * 24 23 22 26 26 C 1.36798 * 109.85821 * 179.97438 * 24 23 22 27 27 C 1.34237 * 109.94091 * 0.02562 * 26 24 23 28 28 C 1.40631 * 119.53913 * 359.72928 * 23 22 21 29 29 C 1.38185 * 119.87847 * 146.72445 * 20 19 17 30 30 H 1.09003 * 109.47464 * 296.04896 * 1 2 3 31 31 H 1.09001 * 109.46883 * 56.04632 * 1 2 3 32 32 H 1.09004 * 109.47315 * 176.04236 * 1 2 3 33 33 H 1.08996 * 109.47375 * 183.95409 * 3 2 1 34 34 H 1.09000 * 109.46707 * 303.95503 * 3 2 1 35 35 H 1.08998 * 109.46986 * 63.95067 * 3 2 1 36 36 H 1.09001 * 109.46979 * 306.04464 * 4 2 1 37 37 H 1.09004 * 109.46933 * 186.04886 * 4 2 1 38 38 H 1.09003 * 109.46733 * 60.00247 * 5 4 2 39 39 H 1.08992 * 109.47316 * 299.99749 * 5 4 2 40 40 H 1.09001 * 109.46768 * 60.00129 * 6 5 4 41 41 H 1.09004 * 109.47111 * 300.00570 * 6 5 4 42 42 H 1.08999 * 109.47294 * 30.27072 * 8 7 6 43 43 H 1.09003 * 109.47424 * 150.27094 * 8 7 6 44 44 H 0.96997 * 119.99736 * 179.97438 * 12 11 9 45 45 H 0.96994 * 119.99973 * 354.63514 * 19 17 7 46 46 H 1.08001 * 119.69333 * 359.97438 * 21 20 19 47 47 H 1.08005 * 119.98964 * 180.30061 * 22 21 20 48 48 H 1.08003 * 125.03144 * 180.02562 * 26 24 23 49 49 H 1.07999 * 126.49633 * 180.02562 * 27 26 24 50 50 H 1.07992 * 120.20407 * 0.02562 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 1.6313 -2.2426 0.9703 6 6 2.1801 -3.0405 2.1549 7 7 1.8321 -4.4544 1.9945 8 6 0.5786 -4.9681 2.5520 9 6 0.8128 -5.4401 3.9639 10 1 1.7973 -5.3653 4.4019 11 6 -0.2294 -5.9674 4.6964 12 7 -1.4280 -6.0589 4.1629 13 14 0.0612 -6.5531 6.4463 14 1 1.4859 -6.3429 6.8085 15 1 -0.8042 -5.7835 7.3759 16 1 -0.2674 -7.9978 6.5457 17 6 2.6679 -5.2840 1.3387 18 8 3.7083 -4.8576 0.8759 19 7 2.3503 -6.5860 1.1959 20 6 3.1621 -7.4242 0.4191 21 6 3.8109 -6.9157 -0.7049 22 6 4.6160 -7.7240 -1.4750 23 6 4.7792 -9.0646 -1.1411 24 7 5.4961 -10.0995 -1.7035 25 1 6.0477 -10.0282 -2.4983 26 6 5.3144 -11.2417 -0.9728 27 6 4.4950 -10.9976 0.0621 28 6 4.1215 -9.5828 -0.0112 29 6 3.3115 -8.7532 0.7671 30 1 -0.3634 0.4513 0.9233 31 1 -0.3633 0.5740 -0.8525 32 1 -0.3634 -1.0252 -0.0709 33 1 3.0827 1.3432 -0.0709 34 1 1.5898 1.9163 -0.8524 35 1 1.7043 1.8723 0.9233 36 1 1.5610 -0.3872 2.0628 37 1 3.0797 -0.6611 1.1757 38 1 2.0657 -2.6213 0.0451 39 1 0.5471 -2.3475 0.9323 40 1 1.7461 -2.6619 3.0803 41 1 3.2645 -2.9356 2.1925 42 1 -0.1701 -4.1759 2.5533 43 1 0.2250 -5.8012 1.9444 44 1 -2.1611 -6.4302 4.6781 45 1 1.5601 -6.9430 1.6306 46 1 3.6839 -5.8769 -0.9717 47 1 5.1178 -7.3184 -2.3410 48 1 5.7637 -12.1982 -1.1956 49 1 4.1729 -11.7090 0.8080 50 1 2.8046 -9.1478 1.6351 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086284906.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:25 Heat of formation + Delta-G solvation = 40.598394 kcal Electronic energy + Delta-G solvation = -29820.731434 eV Core-core repulsion = 25848.675273 eV Total energy + Delta-G solvation = -3972.056161 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.99913 -39.73113 -37.71005 -36.82757 -35.06404 -33.68048 -32.78714 -31.66247 -31.29453 -28.53607 -28.05318 -27.59748 -27.39761 -25.64344 -23.07507 -22.87076 -22.54437 -21.33658 -20.64774 -20.44765 -19.07075 -17.82940 -17.40822 -16.78404 -16.42623 -15.70746 -15.51822 -15.36202 -14.84441 -14.58788 -14.51891 -14.32195 -14.13040 -13.86485 -13.70877 -13.48034 -13.00767 -12.94465 -12.57678 -12.40975 -12.36840 -12.30705 -12.11013 -11.77536 -11.68562 -11.59956 -11.44276 -11.21033 -11.09046 -10.94301 -10.80641 -10.68775 -10.29499 -10.05688 -9.75979 -9.66772 -9.31423 -9.25266 -8.61519 -8.31861 -7.79321 -7.65141 -7.11195 -6.22230 -4.30814 1.37623 1.89944 2.88069 3.19967 3.23491 3.29133 3.33318 3.42741 3.80480 4.03537 4.28602 4.35549 4.68561 4.92637 5.01746 5.10639 5.11832 5.17935 5.31779 5.34866 5.40927 5.51749 5.58276 5.67324 5.72043 5.73966 5.76158 5.80171 5.81172 5.88780 5.93457 6.04377 6.13747 6.20375 6.37198 6.45439 6.50877 6.64479 6.74399 6.78797 6.85154 6.95611 7.06067 7.08503 7.11551 7.12556 7.40846 7.57121 7.65865 7.73367 7.82941 8.00529 8.58831 8.83299 9.30444 9.40127 10.83619 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.006881 B = 0.003520 C = 0.002435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4068.233327 B = 7952.445517 C =11497.638687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.548 5.548 3 C 0.025 3.975 4 C 0.059 3.941 5 C -0.129 4.129 6 C 0.141 3.859 7 N -0.609 5.609 8 C 0.238 3.762 9 C -0.541 4.541 10 H 0.063 0.937 11 C 0.066 3.934 12 N -0.890 5.890 13 Si 0.896 3.104 14 H -0.272 1.272 15 H -0.283 1.283 16 H -0.282 1.282 17 C 0.709 3.291 18 O -0.605 6.605 19 N -0.682 5.682 20 C 0.164 3.836 21 C -0.092 4.092 22 C -0.118 4.118 23 C 0.072 3.928 24 N -0.601 5.601 25 H 0.411 0.589 26 C 0.043 3.957 27 C -0.207 4.207 28 C -0.088 4.088 29 C -0.114 4.114 30 H 0.025 0.975 31 H 0.063 0.937 32 H 0.074 0.926 33 H 0.067 0.933 34 H 0.064 0.936 35 H 0.023 0.977 36 H 0.035 0.965 37 H 0.074 0.926 38 H 0.071 0.929 39 H 0.063 0.937 40 H 0.076 0.924 41 H 0.073 0.927 42 H 0.039 0.961 43 H 0.031 0.969 44 H 0.265 0.735 45 H 0.418 0.582 46 H 0.140 0.860 47 H 0.118 0.882 48 H 0.165 0.835 49 H 0.143 0.857 50 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.820 -0.047 -10.660 13.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.272 5.272 3 C -0.123 4.123 4 C -0.069 4.069 5 C -0.168 4.168 6 C 0.016 3.984 7 N -0.342 5.342 8 C 0.118 3.882 9 C -0.580 4.580 10 H 0.081 0.919 11 C -0.137 4.137 12 N -0.528 5.528 13 Si 0.723 3.277 14 H -0.196 1.196 15 H -0.209 1.209 16 H -0.208 1.208 17 C 0.411 3.589 18 O -0.485 6.485 19 N -0.331 5.331 20 C 0.067 3.933 21 C -0.113 4.113 22 C -0.139 4.139 23 C -0.034 4.034 24 N -0.205 5.205 25 H 0.247 0.753 26 C -0.083 4.083 27 C -0.233 4.233 28 C -0.093 4.093 29 C -0.136 4.136 30 H 0.043 0.957 31 H 0.082 0.918 32 H 0.093 0.907 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.041 0.959 36 H 0.053 0.947 37 H 0.093 0.907 38 H 0.090 0.910 39 H 0.082 0.918 40 H 0.094 0.906 41 H 0.091 0.909 42 H 0.057 0.943 43 H 0.049 0.951 44 H 0.075 0.925 45 H 0.257 0.743 46 H 0.158 0.842 47 H 0.136 0.864 48 H 0.182 0.818 49 H 0.161 0.839 50 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 8.509 0.055 -11.418 14.240 hybrid contribution -0.517 -0.153 1.761 1.841 sum 7.992 -0.098 -9.657 12.536 Atomic orbital electron populations 1.22438 0.87433 1.02770 1.00056 1.61975 1.08078 1.13363 1.43796 1.22363 1.00719 0.89103 1.00141 1.22079 1.00058 0.93961 0.90836 1.21971 1.01483 0.93168 1.00212 1.21070 1.00455 0.79743 0.97147 1.47347 1.22569 1.07787 1.56482 1.19350 0.80207 0.95141 0.93474 1.21593 0.96208 1.41805 0.98382 0.91905 1.24947 0.94857 0.95366 0.98558 1.69930 1.00588 1.44888 1.37409 0.86464 0.78496 0.78503 0.84187 1.19639 1.20883 1.20769 1.15789 0.83139 0.80660 0.79273 1.90821 1.25518 1.76250 1.55943 1.42875 1.29534 1.08150 1.52545 1.17285 0.95161 0.89519 0.91310 1.20906 0.97276 1.00368 0.92792 1.19805 1.02623 0.89915 1.01568 1.18230 0.98604 0.90064 0.96533 1.41723 1.43897 1.07872 1.26986 0.75313 1.21690 1.01805 0.90517 0.94271 1.21648 1.05261 0.94524 1.01822 1.18864 1.00384 0.93823 0.96222 1.20189 1.01012 0.92234 1.00206 0.95678 0.91821 0.90732 0.91455 0.91678 0.95870 0.94722 0.90743 0.91019 0.91807 0.90607 0.90899 0.94307 0.95088 0.92518 0.74264 0.84238 0.86414 0.81762 0.83929 0.85583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.32 60.06 0.56 0.81 16 2 N -0.55 -7.13 5.02 -251.25 -1.26 -8.39 16 3 C 0.03 0.26 9.57 60.07 0.57 0.84 16 4 C 0.06 0.80 4.96 -3.82 -0.02 0.79 16 5 C -0.13 -2.06 5.46 -26.73 -0.15 -2.21 16 6 C 0.14 2.55 5.41 -4.05 -0.02 2.53 16 7 N -0.61 -12.70 2.46 -180.80 -0.44 -13.14 16 8 C 0.24 5.50 4.88 -5.19 -0.03 5.47 16 9 C -0.54 -13.74 9.39 -34.44 -0.32 -14.07 16 10 H 0.06 1.66 7.81 -52.48 -0.41 1.25 16 11 C 0.07 1.71 5.46 -17.82 -0.10 1.61 16 12 N -0.89 -23.88 13.29 55.43 0.74 -23.15 16 13 Si 0.90 20.33 29.54 -169.99 -5.02 15.31 16 14 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 15 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 16 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 17 C 0.71 15.19 8.01 -86.91 -0.70 14.50 16 18 O -0.60 -13.76 13.61 5.28 0.07 -13.69 16 19 N -0.68 -13.56 5.18 -14.20 -0.07 -13.63 16 20 C 0.16 3.03 6.27 -83.63 -0.52 2.50 16 21 C -0.09 -1.61 8.62 -39.37 -0.34 -1.95 16 22 C -0.12 -1.75 10.06 -39.47 -0.40 -2.15 16 23 C 0.07 1.04 7.27 -83.91 -0.61 0.43 16 24 N -0.60 -6.49 6.08 -10.62 -0.06 -6.55 16 25 H 0.41 3.05 8.96 -40.82 -0.37 2.68 16 26 C 0.04 0.44 11.81 -16.75 -0.20 0.24 16 27 C -0.21 -2.62 11.08 -37.66 -0.42 -3.04 16 28 C -0.09 -1.38 6.37 -105.14 -0.67 -2.05 16 29 C -0.11 -1.94 10.01 -39.08 -0.39 -2.33 16 30 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.66 8.12 -51.93 -0.42 0.24 16 32 H 0.07 0.95 6.47 -51.93 -0.34 0.62 16 33 H 0.07 0.67 8.12 -51.93 -0.42 0.24 16 34 H 0.06 0.60 8.12 -51.93 -0.42 0.18 16 35 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 36 H 0.03 0.46 8.12 -51.93 -0.42 0.04 16 37 H 0.07 0.98 8.06 -51.93 -0.42 0.56 16 38 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 39 H 0.06 1.05 6.55 -51.93 -0.34 0.71 16 40 H 0.08 1.36 8.07 -51.93 -0.42 0.94 16 41 H 0.07 1.34 7.42 -51.93 -0.39 0.96 16 42 H 0.04 0.94 8.07 -51.93 -0.42 0.52 16 43 H 0.03 0.74 6.45 -51.93 -0.33 0.40 16 44 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 45 H 0.42 8.36 6.63 -40.82 -0.27 8.09 16 46 H 0.14 2.59 6.41 -52.49 -0.34 2.25 16 47 H 0.12 1.42 8.06 -52.48 -0.42 1.00 16 48 H 0.17 1.01 8.06 -52.48 -0.42 0.58 16 49 H 0.14 1.55 8.06 -52.49 -0.42 1.12 16 50 H 0.13 2.03 8.06 -52.49 -0.42 1.61 16 LS Contribution 408.80 15.07 6.16 6.16 Total: -1.00 -30.51 408.80 -11.45 -41.96 By element: Atomic # 1 Polarization: 21.02 SS G_CDS: -7.82 Total: 13.20 kcal Atomic # 6 Polarization: 5.67 SS G_CDS: -3.74 Total: 1.93 kcal Atomic # 7 Polarization: -63.76 SS G_CDS: -1.11 Total: -64.87 kcal Atomic # 8 Polarization: -13.76 SS G_CDS: 0.07 Total: -13.69 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -30.51 -11.45 -41.96 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086284906.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.560 kcal (2) G-P(sol) polarization free energy of solvation -30.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.962 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds