Wall clock time and date at job start Tue Mar 31 2020 07:13:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34228 * 116.99678 * 2 1 4 4 O 1.20818 * 120.00594 * 0.02562 * 3 2 1 5 5 C 1.50704 * 119.99777 * 179.97438 * 3 2 1 6 6 H 1.09000 * 108.77127 * 58.51545 * 5 3 2 7 7 C 1.50471 * 108.87899 * 300.00492 * 5 3 2 8 8 C 1.54241 * 108.52740 * 145.07444 * 7 5 3 9 9 C 1.45544 * 112.40863 * 79.97840 * 8 7 5 10 10 C 1.54235 * 112.40799 * 298.07258 * 9 8 7 11 11 C 1.50475 * 108.52088 * 79.98732 * 10 9 8 12 12 C 1.54069 * 112.49630 * 265.84441 * 11 10 9 13 13 H 1.08999 * 108.72744 * 280.91744 * 12 11 10 14 14 N 1.46497 * 108.81347 * 162.57539 * 12 11 10 15 15 C 1.34777 * 119.99654 * 81.70835 * 14 12 11 16 16 O 1.21545 * 120.00377 * 0.02562 * 15 14 12 17 17 C 1.47895 * 119.99705 * 180.02562 * 15 14 12 18 18 C 1.39922 * 120.02453 * 0.02562 * 17 15 14 19 19 C 1.38328 * 120.35559 * 179.97438 * 18 17 15 20 20 C 1.37752 * 120.41342 * 0.02562 * 19 18 17 21 21 C 1.40750 * 120.03681 * 0.02562 * 20 19 18 22 22 C 1.41441 * 120.17065 * 180.02562 * 21 20 19 23 23 H 1.07993 * 120.00452 * 24.34379 * 22 21 20 24 24 C 1.39939 * 119.99630 * 204.33749 * 22 21 20 25 25 N 1.30827 * 119.99823 * 17.71726 * 24 22 21 26 26 Si 1.86798 * 120.00355 * 197.71674 * 24 22 21 27 27 H 1.48494 * 109.47266 * 89.99910 * 26 24 22 28 28 H 1.48504 * 109.47309 * 210.00197 * 26 24 22 29 29 H 1.48501 * 109.46920 * 330.00196 * 26 24 22 30 30 C 1.38991 * 120.02202 * 179.72783 * 17 15 14 31 31 H 1.09002 * 109.46804 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47423 * 299.99798 * 1 2 3 33 33 H 1.09007 * 109.46936 * 59.99517 * 1 2 3 34 34 H 1.09008 * 109.62809 * 264.78404 * 7 5 3 35 35 H 1.08999 * 109.63120 * 25.36274 * 7 5 3 36 36 H 1.08993 * 108.89877 * 200.74428 * 8 7 5 37 37 H 1.09014 * 108.89122 * 319.23026 * 8 7 5 38 38 H 1.08999 * 108.89240 * 177.31309 * 9 8 7 39 39 H 1.09005 * 108.81007 * 58.77139 * 9 8 7 40 40 H 1.09005 * 109.62966 * 320.27191 * 10 9 8 41 41 H 1.08999 * 109.79087 * 199.79222 * 10 9 8 42 42 H 1.08999 * 108.87450 * 145.06780 * 11 10 9 43 43 H 1.08991 * 108.87600 * 26.62056 * 11 10 9 44 44 H 0.96999 * 120.00132 * 261.70989 * 14 12 11 45 45 H 1.08001 * 119.81877 * 359.97438 * 18 17 15 46 46 H 1.08003 * 119.79261 * 179.97438 * 19 18 17 47 47 H 1.07998 * 119.97753 * 180.02562 * 20 19 18 48 48 H 0.97003 * 120.00180 * 180.02562 * 25 24 22 49 49 H 1.07996 * 120.20324 * 0.02562 * 30 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9451 0.7548 -0.8792 7 6 4.0893 0.5896 1.2339 8 6 5.4208 -0.1046 0.8815 9 6 6.5426 0.8225 0.8651 10 6 6.3775 1.9264 -0.1993 11 6 5.4527 2.9811 0.3454 12 6 3.9879 2.7549 -0.0751 13 1 3.8598 3.1049 -1.0994 14 7 3.1175 3.5396 0.8039 15 6 2.9230 4.8514 0.5633 16 8 3.4694 5.3832 -0.3833 17 6 2.0447 5.6437 1.4510 18 6 1.4158 5.0321 2.5411 19 6 0.5934 5.7668 3.3761 20 6 0.3834 7.1084 3.1442 21 6 1.0066 7.7405 2.0519 22 6 0.7935 9.1179 1.8115 23 1 0.5040 9.7693 2.6228 24 6 0.9579 9.6367 0.5222 25 7 0.9636 8.8333 -0.5103 26 14 1.1691 11.4762 0.2755 27 1 2.6126 11.8204 0.3294 28 1 0.6165 11.8650 -1.0470 29 1 0.4459 12.2057 1.3479 30 6 1.8483 6.9978 1.2066 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 4.2574 1.3269 2.0190 35 1 3.3678 -0.1533 1.5738 36 1 5.6178 -0.8844 1.6171 37 1 5.3291 -0.5652 -0.1024 38 1 7.4570 0.2664 0.6582 39 1 6.6278 1.2885 1.8468 40 1 5.9515 1.4991 -1.1071 41 1 7.3473 2.3704 -0.4239 42 1 5.7773 3.9563 -0.0176 43 1 5.5122 2.9743 1.4337 44 1 2.6811 3.1151 1.5591 45 1 1.5735 3.9808 2.7315 46 1 0.1122 5.2854 4.2147 47 1 -0.2598 7.6753 3.8009 48 1 1.0779 9.1928 -1.4040 49 1 2.3351 7.4749 0.3690 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089396561.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:13 Heat of formation + Delta-G solvation = -106.918126 kcal Electronic energy + Delta-G solvation = -31324.262769 eV Core-core repulsion = 27215.798399 eV Total energy + Delta-G solvation = -4108.464370 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.11294 -39.31054 -38.29432 -36.85464 -36.47790 -34.12231 -33.63384 -32.65822 -31.22885 -29.66781 -29.31348 -27.88708 -25.39646 -25.36065 -24.69206 -22.39544 -21.64439 -20.88112 -20.77717 -19.44575 -19.26777 -17.75012 -17.64281 -16.92888 -16.42818 -16.01551 -15.58432 -15.27192 -14.99384 -14.82796 -14.55147 -14.02158 -13.89606 -13.73473 -13.45922 -13.29535 -13.19934 -13.02771 -12.86413 -12.55428 -12.39999 -12.22597 -12.20574 -11.89172 -11.57231 -11.12362 -11.07092 -11.03678 -11.01030 -10.84463 -10.82114 -10.64390 -10.62809 -10.52132 -10.41218 -10.10805 -9.91801 -9.60387 -9.15094 -8.86500 -8.38660 -7.52035 -7.43095 -6.72336 -4.33946 2.19967 2.34240 2.57414 2.88640 3.11629 3.14817 3.21760 3.75163 3.96503 4.00767 4.27124 4.42274 4.49502 4.72624 4.81364 4.85213 4.94259 5.02203 5.05364 5.11241 5.13024 5.28383 5.34984 5.44163 5.60757 5.66089 5.70132 5.76822 5.79310 5.87974 5.91441 5.97149 6.08673 6.13163 6.15701 6.25113 6.35502 6.35897 6.38476 6.79663 7.02085 7.07289 7.12460 7.29571 7.47366 7.74730 7.79702 7.86419 8.01550 8.21609 8.29826 8.59314 8.88059 8.92224 9.13384 10.22325 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013666 B = 0.003104 C = 0.002836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2048.318057 B = 9017.516865 C = 9870.471023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.364 6.364 3 C 0.447 3.553 4 O -0.471 6.471 5 C -0.082 4.082 6 H 0.116 0.884 7 C -0.116 4.116 8 C -0.112 4.112 9 C -0.122 4.122 10 C -0.116 4.116 11 C -0.129 4.129 12 C 0.165 3.835 13 H 0.087 0.913 14 N -0.716 5.716 15 C 0.572 3.428 16 O -0.552 6.552 17 C -0.122 4.122 18 C -0.210 4.210 19 C -0.100 4.100 20 C -0.213 4.213 21 C 0.099 3.901 22 C -0.462 4.462 23 H 0.080 0.920 24 C 0.073 3.927 25 N -0.783 5.783 26 Si 0.910 3.090 27 H -0.267 1.267 28 H -0.278 1.278 29 H -0.262 1.262 30 C -0.094 4.094 31 H 0.098 0.902 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.060 0.940 39 H 0.063 0.937 40 H 0.065 0.935 41 H 0.066 0.934 42 H 0.075 0.925 43 H 0.068 0.932 44 H 0.396 0.604 45 H 0.086 0.914 46 H 0.091 0.909 47 H 0.094 0.906 48 H 0.283 0.717 49 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.917 -19.529 0.929 20.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.281 6.281 3 C 0.288 3.712 4 O -0.355 6.355 5 C -0.102 4.102 6 H 0.134 0.866 7 C -0.154 4.154 8 C -0.150 4.150 9 C -0.159 4.159 10 C -0.154 4.154 11 C -0.167 4.167 12 C 0.059 3.941 13 H 0.105 0.895 14 N -0.368 5.368 15 C 0.363 3.637 16 O -0.431 6.431 17 C -0.125 4.125 18 C -0.230 4.230 19 C -0.119 4.119 20 C -0.233 4.233 21 C 0.096 3.904 22 C -0.492 4.492 23 H 0.098 0.902 24 C -0.146 4.146 25 N -0.408 5.408 26 Si 0.734 3.266 27 H -0.192 1.192 28 H -0.203 1.203 29 H -0.186 1.186 30 C -0.114 4.114 31 H 0.117 0.883 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.078 0.922 39 H 0.081 0.919 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.093 0.907 43 H 0.086 0.914 44 H 0.232 0.768 45 H 0.104 0.896 46 H 0.109 0.891 47 H 0.112 0.888 48 H 0.095 0.905 49 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 7.055 -18.834 -0.028 20.112 hybrid contribution -0.574 0.527 0.087 0.784 sum 6.481 -18.307 0.059 19.421 Atomic orbital electron populations 1.23247 0.76369 1.03330 1.02902 1.86464 1.23336 1.33726 1.84583 1.23817 0.92049 0.81628 0.73721 1.90860 1.66753 1.35462 1.42410 1.21295 0.87535 0.98678 1.02651 0.86640 1.21442 0.97810 1.00023 0.96080 1.20449 0.94127 0.98283 1.02118 1.20550 0.98278 0.97363 0.99759 1.21335 0.99631 0.96052 0.98406 1.21768 0.93144 1.00075 1.01745 1.21113 0.89689 0.86580 0.96681 0.89529 1.45863 1.49492 1.09781 1.31692 1.18682 0.79910 0.80950 0.84173 1.90664 1.50560 1.71007 1.30882 1.19474 1.01154 0.95002 0.96885 1.20304 1.06353 0.97292 0.99093 1.20413 0.98721 0.94568 0.98152 1.21072 1.05246 0.94060 1.02895 1.17590 0.88944 0.93310 0.90510 1.19573 1.41497 0.93548 0.94536 0.90177 1.25955 0.92405 1.00540 0.95654 1.69809 1.33577 1.37450 0.99932 0.86288 0.79608 0.82302 0.78387 1.19189 1.20287 1.18638 1.21624 0.97746 0.91319 1.00694 0.88350 0.91718 0.91901 0.90366 0.90334 0.91713 0.91795 0.92157 0.91868 0.91629 0.91478 0.90657 0.91353 0.76798 0.89627 0.89128 0.88750 0.90540 0.84923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.34 10.56 101.05 1.07 1.40 16 2 O -0.36 -4.12 10.05 -39.25 -0.39 -4.51 16 3 C 0.45 5.94 6.71 36.01 0.24 6.18 16 4 O -0.47 -8.28 13.50 -18.74 -0.25 -8.53 16 5 C -0.08 -0.88 1.89 -92.47 -0.17 -1.06 16 6 H 0.12 1.01 6.63 -51.93 -0.34 0.67 16 7 C -0.12 -1.00 5.11 -27.35 -0.14 -1.13 16 8 C -0.11 -0.77 5.26 -29.60 -0.16 -0.93 16 9 C -0.12 -0.90 5.26 -29.60 -0.16 -1.06 16 10 C -0.12 -1.04 5.61 -27.35 -0.15 -1.19 16 11 C -0.13 -1.58 4.82 -27.43 -0.13 -1.71 16 12 C 0.17 2.34 1.91 -66.82 -0.13 2.21 16 13 H 0.09 1.43 7.59 -51.93 -0.39 1.04 16 14 N -0.72 -12.65 2.97 -53.65 -0.16 -12.81 16 15 C 0.57 13.21 7.68 -12.31 -0.09 13.11 16 16 O -0.55 -14.30 16.00 5.33 0.09 -14.22 16 17 C -0.12 -3.05 5.87 -105.03 -0.62 -3.67 16 18 C -0.21 -4.74 9.55 -38.92 -0.37 -5.11 16 19 C -0.10 -2.26 10.01 -39.73 -0.40 -2.65 16 20 C -0.21 -5.27 9.78 -38.81 -0.38 -5.65 16 21 C 0.10 2.72 5.57 -106.87 -0.60 2.12 16 22 C -0.46 -12.55 9.05 -37.73 -0.34 -12.89 16 23 H 0.08 2.06 7.91 -52.49 -0.41 1.65 16 24 C 0.07 1.92 5.14 -17.34 -0.09 1.83 16 25 N -0.78 -21.52 10.96 55.55 0.61 -20.91 16 26 Si 0.91 19.34 29.59 -169.99 -5.03 14.31 16 27 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 28 H -0.28 -5.78 7.11 56.52 0.40 -5.37 16 29 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 30 C -0.09 -2.61 8.24 -38.44 -0.32 -2.93 16 31 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.65 8.13 -51.93 -0.42 0.23 16 33 H 0.06 0.64 8.13 -51.93 -0.42 0.22 16 34 H 0.08 0.73 6.98 -51.92 -0.36 0.36 16 35 H 0.08 0.64 7.32 -51.93 -0.38 0.26 16 36 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 37 H 0.06 0.40 7.47 -51.92 -0.39 0.01 16 38 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 39 H 0.06 0.50 7.47 -51.93 -0.39 0.11 16 40 H 0.07 0.55 6.98 -51.93 -0.36 0.18 16 41 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 43 H 0.07 0.83 6.61 -51.93 -0.34 0.48 16 44 H 0.40 6.56 5.56 -40.82 -0.23 6.33 16 45 H 0.09 1.67 6.38 -52.49 -0.33 1.33 16 46 H 0.09 1.74 8.06 -52.48 -0.42 1.31 16 47 H 0.09 2.17 8.06 -52.49 -0.42 1.75 16 48 H 0.28 7.16 8.30 -40.82 -0.34 6.83 16 49 H 0.13 3.98 5.75 -52.49 -0.30 3.68 16 LS Contribution 386.44 15.07 5.82 5.82 Total: -1.00 -32.75 386.44 -9.43 -42.18 By element: Atomic # 1 Polarization: 18.97 SS G_CDS: -7.18 Total: 11.79 kcal Atomic # 6 Polarization: -10.19 SS G_CDS: -2.93 Total: -13.13 kcal Atomic # 7 Polarization: -34.16 SS G_CDS: 0.45 Total: -33.71 kcal Atomic # 8 Polarization: -26.70 SS G_CDS: -0.56 Total: -27.26 kcal Atomic # 14 Polarization: 19.34 SS G_CDS: -5.03 Total: 14.31 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.75 -9.43 -42.18 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089396561.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.736 kcal (2) G-P(sol) polarization free energy of solvation -32.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds