Wall clock time and date at job start Tue Mar 31 2020 07:13:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34226 * 116.99989 * 2 1 4 4 O 1.20819 * 120.00331 * 0.02562 * 3 2 1 5 5 C 1.50697 * 119.99772 * 179.97438 * 3 2 1 6 6 H 1.09000 * 109.62949 * 22.12178 * 5 3 2 7 7 C 1.54238 * 109.79341 * 142.61639 * 5 3 2 8 8 C 1.45542 * 112.41420 * 199.80523 * 7 5 3 9 9 C 1.54241 * 112.40006 * 298.06196 * 8 7 5 10 10 C 1.50471 * 108.53238 * 79.97176 * 9 8 7 11 11 C 1.54003 * 112.55225 * 265.93383 * 10 9 8 12 12 C 1.50477 * 109.63058 * 261.73576 * 5 3 2 13 13 H 1.09006 * 108.87502 * 266.61661 * 12 5 3 14 14 N 1.46494 * 108.87804 * 25.16330 * 12 5 3 15 15 C 1.34774 * 120.00050 * 208.82001 * 14 12 5 16 16 O 1.21548 * 120.00008 * 0.02562 * 15 14 12 17 17 C 1.47889 * 120.00168 * 179.97438 * 15 14 12 18 18 C 1.39919 * 120.02351 * 0.02562 * 17 15 14 19 19 C 1.38332 * 120.35740 * 179.97438 * 18 17 15 20 20 C 1.37745 * 120.41249 * 0.04866 * 19 18 17 21 21 C 1.40752 * 120.03965 * 359.97180 * 20 19 18 22 22 C 1.41437 * 120.17383 * 179.97438 * 21 20 19 23 23 H 1.08006 * 119.99988 * 153.92094 * 22 21 20 24 24 C 1.39932 * 120.00404 * 333.91476 * 22 21 20 25 25 N 1.30824 * 120.00020 * 347.99480 * 24 22 21 26 26 Si 1.86804 * 119.99984 * 167.99393 * 24 22 21 27 27 H 1.48495 * 109.47259 * 94.96227 * 26 24 22 28 28 H 1.48502 * 109.46694 * 214.95933 * 26 24 22 29 29 H 1.48496 * 109.47066 * 334.95514 * 26 24 22 30 30 C 1.38993 * 120.02514 * 179.97438 * 17 15 14 31 31 H 1.09002 * 109.47491 * 300.00069 * 1 2 3 32 32 H 1.08998 * 109.46792 * 59.99882 * 1 2 3 33 33 H 1.09000 * 109.47383 * 179.97438 * 1 2 3 34 34 H 1.09000 * 108.88847 * 320.55758 * 7 5 3 35 35 H 1.08994 * 108.89765 * 79.14219 * 7 5 3 36 36 H 1.09007 * 108.89707 * 58.80770 * 8 7 5 37 37 H 1.08994 * 108.89755 * 177.40331 * 8 7 5 38 38 H 1.08997 * 109.62788 * 199.69249 * 9 8 7 39 39 H 1.09006 * 109.62823 * 320.06856 * 9 8 7 40 40 H 1.09003 * 108.87373 * 26.63486 * 10 9 8 41 41 H 1.09007 * 108.87672 * 145.17597 * 10 9 8 42 42 H 1.08995 * 108.71342 * 280.74417 * 11 10 9 43 43 H 1.09001 * 108.87335 * 162.48361 * 11 10 9 44 44 H 0.97004 * 119.99990 * 28.82027 * 14 12 5 45 45 H 1.08004 * 119.82302 * 359.97438 * 18 17 15 46 46 H 1.08001 * 119.78946 * 180.02562 * 19 18 17 47 47 H 1.08003 * 119.97955 * 180.02562 * 20 19 18 48 48 H 0.97000 * 119.99955 * 179.97438 * 25 24 22 49 49 H 1.07993 * 120.20413 * 0.30486 * 30 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 1 3.9819 0.3441 -0.3857 7 6 4.0279 2.4535 -0.8806 8 6 5.4158 2.3233 -1.2990 9 6 6.3916 2.3159 -0.1045 10 6 6.3953 0.9386 0.5014 11 6 5.4063 0.8067 1.6745 12 6 4.0599 1.5049 1.4033 13 1 4.1798 2.5765 1.5636 14 7 3.0625 0.9938 2.3467 15 6 2.9443 1.5490 3.5690 16 8 3.6650 2.4741 3.8886 17 6 1.9370 1.0334 4.5212 18 6 1.1068 -0.0313 4.1537 19 6 0.1626 -0.5194 5.0390 20 6 0.0279 0.0372 6.2918 21 6 0.8539 1.1091 6.6791 22 6 0.7177 1.6831 7.9645 23 1 1.5591 2.1778 8.4270 24 6 -0.5071 1.6102 8.6372 25 7 -1.5826 1.2273 7.9982 26 14 -0.6066 2.0595 10.4477 27 1 -1.0192 3.4795 10.5834 28 1 -1.6036 1.1880 11.1199 29 1 0.7237 1.8680 11.0791 30 6 1.8150 1.6052 5.7821 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 3.3950 2.5006 -1.7668 35 1 3.9159 3.3801 -0.3177 36 1 5.5312 1.3927 -1.8548 37 1 5.6671 3.1581 -1.9532 38 1 7.3946 2.5669 -0.4495 39 1 6.0669 3.0448 0.6381 40 1 6.1266 0.2143 -0.2676 41 1 7.3996 0.7142 0.8610 42 1 5.8576 1.2468 2.5636 43 1 5.2220 -0.2509 1.8631 44 1 2.4871 0.2557 2.0915 45 1 1.2036 -0.4744 3.1735 46 1 -0.4732 -1.3418 4.7459 47 1 -0.7113 -0.3497 6.9776 48 1 -2.4316 1.1765 8.4646 49 1 2.4509 2.4298 6.0685 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089396566.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:19 Heat of formation + Delta-G solvation = -120.604187 kcal Electronic energy + Delta-G solvation = -31152.441930 eV Core-core repulsion = 27043.384087 eV Total energy + Delta-G solvation = -4109.057843 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.20772 -39.43693 -38.45324 -36.99313 -36.46156 -34.55982 -33.72030 -32.71751 -31.15527 -29.89080 -29.35024 -28.02709 -25.67948 -25.42034 -24.61030 -22.40089 -22.04832 -20.75253 -20.65830 -19.76458 -19.41962 -18.09003 -17.76648 -16.92516 -16.61618 -15.98606 -15.73937 -15.21745 -14.94133 -14.86644 -14.52823 -14.40816 -14.12164 -13.84404 -13.68130 -13.51371 -13.29961 -13.14990 -12.81462 -12.48567 -12.41920 -12.26014 -12.16030 -11.94374 -11.66767 -11.39126 -11.17183 -11.11323 -10.97873 -10.89063 -10.83285 -10.70833 -10.65554 -10.54567 -10.44826 -10.34736 -10.20770 -9.54051 -9.28111 -9.17255 -8.82982 -7.64671 -7.52205 -6.78428 -4.45187 2.09828 2.19429 2.56977 2.72755 3.05604 3.09361 3.13424 3.44694 3.81673 3.91321 4.25437 4.39531 4.55013 4.62153 4.70643 4.85245 4.93171 4.95230 5.07574 5.07818 5.15280 5.19472 5.39934 5.49163 5.51904 5.56377 5.58703 5.64708 5.76525 5.82337 5.87759 5.94616 5.97444 6.05670 6.09180 6.18264 6.21324 6.25874 6.32499 6.71040 6.86803 6.92647 6.98297 7.16832 7.34461 7.60519 7.67456 7.77498 7.92163 7.94076 8.16978 8.52343 8.75969 8.81256 8.83412 10.15149 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.016196 B = 0.002842 C = 0.002570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.391285 B = 9849.657057 C =10892.920089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.363 6.363 3 C 0.467 3.533 4 O -0.494 6.494 5 C -0.085 4.085 6 H 0.110 0.890 7 C -0.100 4.100 8 C -0.118 4.118 9 C -0.125 4.125 10 C -0.116 4.116 11 C -0.128 4.128 12 C 0.158 3.842 13 H 0.098 0.902 14 N -0.740 5.740 15 C 0.568 3.432 16 O -0.547 6.547 17 C -0.121 4.121 18 C -0.206 4.206 19 C -0.113 4.113 20 C -0.139 4.139 21 C 0.097 3.903 22 C -0.457 4.457 23 H 0.080 0.920 24 C 0.072 3.928 25 N -0.800 5.800 26 Si 0.913 3.087 27 H -0.270 1.270 28 H -0.275 1.275 29 H -0.260 1.260 30 C -0.151 4.151 31 H 0.070 0.930 32 H 0.061 0.939 33 H 0.103 0.897 34 H 0.069 0.931 35 H 0.078 0.922 36 H 0.064 0.936 37 H 0.068 0.932 38 H 0.066 0.934 39 H 0.071 0.929 40 H 0.062 0.938 41 H 0.064 0.936 42 H 0.074 0.926 43 H 0.068 0.932 44 H 0.400 0.600 45 H 0.088 0.912 46 H 0.094 0.906 47 H 0.128 0.872 48 H 0.281 0.719 49 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.596 -4.244 -17.314 19.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.280 6.280 3 C 0.308 3.692 4 O -0.379 6.379 5 C -0.105 4.105 6 H 0.128 0.872 7 C -0.138 4.138 8 C -0.156 4.156 9 C -0.163 4.163 10 C -0.154 4.154 11 C -0.166 4.166 12 C 0.053 3.947 13 H 0.116 0.884 14 N -0.396 5.396 15 C 0.359 3.641 16 O -0.425 6.425 17 C -0.124 4.124 18 C -0.226 4.226 19 C -0.131 4.131 20 C -0.159 4.159 21 C 0.094 3.906 22 C -0.487 4.487 23 H 0.098 0.902 24 C -0.144 4.144 25 N -0.426 5.426 26 Si 0.737 3.263 27 H -0.195 1.195 28 H -0.201 1.201 29 H -0.184 1.184 30 C -0.171 4.171 31 H 0.089 0.911 32 H 0.080 0.920 33 H 0.121 0.879 34 H 0.088 0.912 35 H 0.096 0.904 36 H 0.083 0.917 37 H 0.087 0.913 38 H 0.084 0.916 39 H 0.090 0.910 40 H 0.081 0.919 41 H 0.083 0.917 42 H 0.093 0.907 43 H 0.087 0.913 44 H 0.237 0.763 45 H 0.106 0.894 46 H 0.112 0.888 47 H 0.145 0.855 48 H 0.092 0.908 49 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 8.605 -3.300 -17.036 19.369 hybrid contribution -0.829 -0.189 0.613 1.048 sum 7.776 -3.489 -16.423 18.502 Atomic orbital electron populations 1.23336 0.75870 1.03925 1.02973 1.86495 1.23881 1.33443 1.84154 1.23469 0.91609 0.81668 0.72410 1.90688 1.66918 1.36243 1.44068 1.21232 0.87657 1.03048 0.98574 0.87211 1.20365 0.97144 0.96933 0.99374 1.20511 0.94173 1.02623 0.98249 1.21435 0.99314 0.97864 0.97664 1.21327 0.99184 0.97328 0.97603 1.22335 0.93895 1.01226 0.99192 1.20672 0.88165 1.01011 0.84832 0.88412 1.46347 1.38977 1.38698 1.15529 1.18874 0.82848 0.81334 0.81000 1.90667 1.45738 1.29064 1.77065 1.19303 0.98350 0.99741 0.95042 1.20397 1.01714 1.01466 0.99037 1.20623 0.97913 0.99536 0.95074 1.21632 1.02062 0.96360 0.95810 1.17609 0.90223 0.90248 0.92481 1.19614 0.97073 1.31783 1.00180 0.90199 1.25908 0.95086 0.93060 1.00378 1.69767 0.99924 1.35609 1.37344 0.86215 0.79259 0.79074 0.81723 1.19519 1.20051 1.18398 1.21231 1.02829 1.00897 0.92161 0.91130 0.92037 0.87908 0.91208 0.90377 0.91731 0.91342 0.91567 0.91002 0.91929 0.91743 0.90717 0.91339 0.76267 0.89435 0.88791 0.85472 0.90835 0.87422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.56 101.05 1.07 1.42 16 2 O -0.36 -4.49 9.77 -39.25 -0.38 -4.87 16 3 C 0.47 6.41 5.13 36.00 0.18 6.60 16 4 O -0.49 -8.37 16.28 -18.74 -0.31 -8.67 16 5 C -0.09 -0.94 2.22 -92.39 -0.21 -1.15 16 6 H 0.11 0.97 6.97 -51.93 -0.36 0.61 16 7 C -0.10 -0.96 4.27 -29.60 -0.13 -1.09 16 8 C -0.12 -0.86 5.26 -29.60 -0.16 -1.02 16 9 C -0.13 -1.00 5.60 -27.34 -0.15 -1.15 16 10 C -0.12 -0.97 5.31 -27.47 -0.15 -1.11 16 11 C -0.13 -1.46 5.42 -25.65 -0.14 -1.60 16 12 C 0.16 2.13 1.83 -68.64 -0.13 2.01 16 13 H 0.10 1.52 5.95 -51.93 -0.31 1.21 16 14 N -0.74 -12.29 4.13 -55.43 -0.23 -12.52 16 15 C 0.57 12.06 7.74 -12.31 -0.10 11.97 16 16 O -0.55 -12.88 15.94 5.32 0.08 -12.80 16 17 C -0.12 -2.81 5.87 -105.04 -0.62 -3.43 16 18 C -0.21 -4.38 9.55 -38.92 -0.37 -4.75 16 19 C -0.11 -2.51 10.01 -39.73 -0.40 -2.90 16 20 C -0.14 -3.50 8.68 -38.81 -0.34 -3.83 16 21 C 0.10 2.57 5.57 -106.87 -0.60 1.98 16 22 C -0.46 -12.11 9.07 -37.73 -0.34 -12.45 16 23 H 0.08 2.05 7.87 -52.48 -0.41 1.64 16 24 C 0.07 1.80 5.25 -17.35 -0.09 1.71 16 25 N -0.80 -20.34 10.72 55.55 0.60 -19.74 16 26 Si 0.91 18.63 29.58 -169.99 -5.03 13.61 16 27 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 28 H -0.28 -5.46 7.11 56.52 0.40 -5.05 16 29 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 30 C -0.15 -3.87 9.34 -38.44 -0.36 -4.22 16 31 H 0.07 0.89 8.13 -51.93 -0.42 0.46 16 32 H 0.06 0.61 8.13 -51.93 -0.42 0.19 16 33 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.07 0.65 7.97 -51.93 -0.41 0.23 16 35 H 0.08 0.87 7.47 -51.93 -0.39 0.48 16 36 H 0.06 0.40 7.47 -51.93 -0.39 0.02 16 37 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.07 0.69 6.99 -51.93 -0.36 0.32 16 40 H 0.06 0.44 6.63 -51.93 -0.34 0.10 16 41 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.07 0.77 8.12 -51.93 -0.42 0.34 16 44 H 0.40 6.21 4.88 -40.82 -0.20 6.01 16 45 H 0.09 1.58 6.38 -52.48 -0.33 1.24 16 46 H 0.09 1.81 8.06 -52.49 -0.42 1.38 16 47 H 0.13 3.28 6.04 -52.48 -0.32 2.96 16 48 H 0.28 6.48 8.30 -40.82 -0.34 6.14 16 49 H 0.11 2.80 7.64 -52.49 -0.40 2.40 16 LS Contribution 388.12 15.07 5.85 5.85 Total: -1.00 -30.79 388.12 -9.59 -40.38 By element: Atomic # 1 Polarization: 18.98 SS G_CDS: -7.17 Total: 11.81 kcal Atomic # 6 Polarization: -10.04 SS G_CDS: -3.01 Total: -13.04 kcal Atomic # 7 Polarization: -32.63 SS G_CDS: 0.37 Total: -32.26 kcal Atomic # 8 Polarization: -25.73 SS G_CDS: -0.60 Total: -26.34 kcal Atomic # 14 Polarization: 18.63 SS G_CDS: -5.03 Total: 13.61 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -30.79 -9.59 -40.38 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089396566.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.226 kcal (2) G-P(sol) polarization free energy of solvation -30.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds