Wall clock time and date at job start Tue Mar 31 2020 07:13:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34235 * 116.99629 * 2 1 4 4 O 1.20831 * 119.99971 * 359.97438 * 3 2 1 5 5 C 1.50695 * 120.00072 * 180.02562 * 3 2 1 6 6 H 1.08996 * 108.77186 * 340.35972 * 5 3 2 7 7 C 1.54065 * 108.88019 * 221.84911 * 5 3 2 8 8 C 1.54063 * 112.82045 * 197.50627 * 7 5 3 9 9 C 1.50473 * 112.49791 * 318.27936 * 8 7 5 10 10 C 1.54236 * 108.52063 * 94.15013 * 9 8 7 11 11 C 1.45543 * 112.40810 * 280.01487 * 10 9 8 12 12 C 1.50474 * 108.87800 * 98.86949 * 5 3 2 13 13 H 1.09000 * 109.78749 * 95.12761 * 12 5 3 14 14 N 1.46498 * 109.62939 * 334.64075 * 12 5 3 15 15 C 1.34778 * 120.00059 * 152.78104 * 14 12 5 16 16 O 1.21554 * 119.99978 * 0.02562 * 15 14 12 17 17 C 1.47880 * 120.00259 * 179.97438 * 15 14 12 18 18 C 1.39923 * 120.02418 * 0.02562 * 17 15 14 19 19 C 1.38331 * 120.36082 * 179.74598 * 18 17 15 20 20 C 1.37755 * 120.41014 * 0.23622 * 19 18 17 21 21 C 1.40746 * 120.03877 * 359.97438 * 20 19 18 22 22 C 1.41439 * 120.17743 * 180.02562 * 21 20 19 23 23 H 1.08002 * 119.99847 * 25.96863 * 22 21 20 24 24 C 1.39943 * 120.00035 * 205.97230 * 22 21 20 25 25 N 1.30824 * 119.99945 * 16.47247 * 24 22 21 26 26 Si 1.86797 * 119.99751 * 196.48143 * 24 22 21 27 27 H 1.48500 * 109.47394 * 89.99678 * 26 24 22 28 28 H 1.48505 * 109.47083 * 209.99694 * 26 24 22 29 29 H 1.48497 * 109.47502 * 329.99685 * 26 24 22 30 30 C 1.38993 * 120.02861 * 180.23676 * 17 15 14 31 31 H 1.08998 * 109.47490 * 60.00749 * 1 2 3 32 32 H 1.09002 * 109.46782 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47197 * 300.00191 * 1 2 3 34 34 H 1.09003 * 108.81399 * 76.63824 * 7 5 3 35 35 H 1.09003 * 108.72382 * 318.31086 * 7 5 3 36 36 H 1.09004 * 108.87787 * 197.50577 * 8 7 5 37 37 H 1.09002 * 108.80004 * 79.00664 * 8 7 5 38 38 H 1.09010 * 109.62738 * 334.44393 * 9 8 7 39 39 H 1.08993 * 109.63015 * 213.86301 * 9 8 7 40 40 H 1.09007 * 108.89618 * 159.26177 * 10 9 8 41 41 H 1.09001 * 108.82329 * 40.72085 * 10 9 8 42 42 H 1.09005 * 108.89588 * 301.18381 * 11 10 9 43 43 H 1.08997 * 108.89646 * 182.69048 * 11 10 9 44 44 H 0.97000 * 119.99837 * 332.78166 * 14 12 5 45 45 H 1.08003 * 119.82102 * 0.02562 * 18 17 15 46 46 H 1.07996 * 119.79892 * 180.25372 * 19 18 17 47 47 H 1.07997 * 119.97817 * 180.02562 * 20 19 18 48 48 H 0.97003 * 119.99997 * 179.97438 * 25 24 22 49 49 H 1.07997 * 120.20250 * 0.02562 * 30 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5662 1.2751 -0.0006 6 1 3.9676 0.3228 0.3459 7 6 4.0075 2.3854 0.9720 8 6 5.4603 2.8419 0.7382 9 6 6.3900 1.6894 0.4707 10 6 6.5070 1.4982 -1.0553 11 6 5.3743 0.7733 -1.6120 12 6 4.0403 1.5201 -1.4075 13 1 4.1906 2.5881 -1.5655 14 7 3.0444 1.0175 -2.3570 15 6 2.9435 1.5688 -3.5827 16 8 3.6792 2.4828 -3.9005 17 6 1.9385 1.0611 -4.5415 18 6 1.0917 0.0088 -4.1765 19 6 0.1456 -0.4681 -5.0659 20 6 0.0293 0.0840 -6.3226 21 6 0.8753 1.1403 -6.7092 22 6 0.7581 1.7096 -7.9986 23 1 -0.1837 1.6642 -8.5254 24 6 1.8623 2.3318 -8.5919 25 7 3.0645 2.1165 -8.1229 26 14 1.6197 3.4697 -10.0532 27 1 1.4106 4.8582 -9.5701 28 1 2.8235 3.4238 -10.9216 29 1 0.4322 3.0318 -10.8299 30 6 1.8373 1.6260 -5.8074 31 1 -0.3634 0.5137 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8899 34 1 3.9153 2.0153 1.9932 35 1 3.3454 3.2424 0.8483 36 1 5.8080 3.3779 1.6214 37 1 5.4826 3.5187 -0.1160 38 1 5.9889 0.7826 0.9237 39 1 7.3727 1.9071 0.8889 40 1 7.4211 0.9457 -1.2728 41 1 6.5662 2.4782 -1.5290 42 1 5.3095 -0.2030 -1.1317 43 1 5.5380 0.6291 -2.6799 44 1 2.4575 0.2880 -2.1036 45 1 1.1741 -0.4306 -3.1933 46 1 -0.5061 -1.2780 -4.7732 47 1 -0.7120 -0.2934 -7.0113 48 1 3.8300 2.5474 -8.5343 49 1 2.4914 2.4359 -6.0948 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089396569.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:25 Heat of formation + Delta-G solvation = -120.545533 kcal Electronic energy + Delta-G solvation = -31426.238096 eV Core-core repulsion = 27317.182797 eV Total energy + Delta-G solvation = -4109.055299 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.17491 -39.40309 -38.35232 -36.91296 -36.48341 -34.36392 -33.70085 -32.81150 -31.20564 -29.71819 -29.42169 -27.99244 -25.45352 -25.42094 -24.77469 -22.32485 -21.78044 -20.99167 -20.67439 -19.70783 -19.30755 -17.95465 -17.69719 -17.01654 -16.46128 -15.92494 -15.78669 -15.14444 -14.99796 -14.71131 -14.59617 -14.39074 -14.16319 -13.67826 -13.65019 -13.44295 -13.24871 -13.13916 -12.70461 -12.50540 -12.46102 -12.27783 -12.11020 -11.85495 -11.66244 -11.33422 -11.17863 -11.10301 -10.91467 -10.81010 -10.74934 -10.70783 -10.64340 -10.53077 -10.48560 -10.24815 -10.01900 -9.69960 -9.23101 -9.04019 -8.74410 -7.64417 -7.52066 -6.79311 -4.42264 2.11939 2.21352 2.57637 2.81020 3.08103 3.11230 3.15283 3.51448 3.83815 3.92529 4.33431 4.48136 4.55646 4.64568 4.81520 4.84958 4.92501 5.05643 5.06292 5.08134 5.17069 5.21628 5.44362 5.50746 5.54536 5.59474 5.62681 5.71212 5.76508 5.89860 5.94265 6.02830 6.04754 6.07197 6.17655 6.25437 6.28701 6.30188 6.33107 6.70302 6.80722 6.97922 7.00066 7.20509 7.37077 7.66781 7.68550 7.73644 7.90518 8.05114 8.17481 8.49767 8.79980 8.82480 8.91301 10.15724 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012780 B = 0.003348 C = 0.002855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2190.384682 B = 8360.551565 C = 9803.785557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.363 6.363 3 C 0.464 3.536 4 O -0.495 6.495 5 C -0.084 4.084 6 H 0.105 0.895 7 C -0.106 4.106 8 C -0.120 4.120 9 C -0.121 4.121 10 C -0.119 4.119 11 C -0.126 4.126 12 C 0.159 3.841 13 H 0.102 0.898 14 N -0.739 5.739 15 C 0.568 3.432 16 O -0.540 6.540 17 C -0.129 4.129 18 C -0.216 4.216 19 C -0.097 4.097 20 C -0.210 4.210 21 C 0.099 3.901 22 C -0.461 4.461 23 H 0.081 0.919 24 C 0.073 3.927 25 N -0.785 5.785 26 Si 0.911 3.089 27 H -0.267 1.267 28 H -0.277 1.277 29 H -0.262 1.262 30 C -0.088 4.088 31 H 0.069 0.931 32 H 0.102 0.898 33 H 0.061 0.939 34 H 0.069 0.931 35 H 0.080 0.920 36 H 0.066 0.934 37 H 0.069 0.931 38 H 0.066 0.934 39 H 0.065 0.935 40 H 0.064 0.936 41 H 0.067 0.933 42 H 0.064 0.936 43 H 0.075 0.925 44 H 0.398 0.602 45 H 0.087 0.913 46 H 0.093 0.907 47 H 0.096 0.904 48 H 0.284 0.716 49 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.825 -3.772 17.532 18.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.279 6.279 3 C 0.306 3.694 4 O -0.381 6.381 5 C -0.104 4.104 6 H 0.123 0.877 7 C -0.144 4.144 8 C -0.157 4.157 9 C -0.159 4.159 10 C -0.156 4.156 11 C -0.165 4.165 12 C 0.054 3.946 13 H 0.120 0.880 14 N -0.395 5.395 15 C 0.359 3.641 16 O -0.417 6.417 17 C -0.132 4.132 18 C -0.237 4.237 19 C -0.116 4.116 20 C -0.230 4.230 21 C 0.097 3.903 22 C -0.490 4.490 23 H 0.099 0.901 24 C -0.146 4.146 25 N -0.410 5.410 26 Si 0.735 3.265 27 H -0.192 1.192 28 H -0.202 1.202 29 H -0.186 1.186 30 C -0.108 4.108 31 H 0.088 0.912 32 H 0.120 0.880 33 H 0.080 0.920 34 H 0.087 0.913 35 H 0.099 0.901 36 H 0.085 0.915 37 H 0.088 0.912 38 H 0.085 0.915 39 H 0.084 0.916 40 H 0.082 0.918 41 H 0.086 0.914 42 H 0.082 0.918 43 H 0.094 0.906 44 H 0.235 0.765 45 H 0.105 0.895 46 H 0.111 0.889 47 H 0.114 0.886 48 H 0.095 0.905 49 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 4.366 -2.752 17.242 17.998 hybrid contribution -0.588 -0.019 -0.512 0.780 sum 3.778 -2.771 16.729 17.373 Atomic orbital electron populations 1.23324 0.76015 1.03869 1.02907 1.86512 1.23801 1.33476 1.84149 1.23627 0.91880 0.81629 0.72274 1.90676 1.66910 1.36239 1.44225 1.21340 0.87538 1.03285 0.98217 0.87684 1.21890 0.97649 0.97565 0.97277 1.21368 0.93240 0.98571 1.02535 1.21420 0.99391 0.98792 0.96271 1.20475 0.98196 1.01696 0.95279 1.20877 0.93761 0.99054 1.02819 1.20530 0.88305 1.01051 0.84694 0.87963 1.46243 1.38603 1.39574 1.15046 1.18840 0.83100 0.81261 0.80888 1.90691 1.44521 1.29420 1.77109 1.19461 0.98336 1.00250 0.95194 1.20326 1.01997 1.02423 0.98916 1.20418 0.97778 0.98972 0.94410 1.21114 1.05200 1.00029 0.96660 1.17601 0.90357 0.89541 0.92813 1.19595 0.97509 1.31529 1.00361 0.90067 1.25954 0.94509 0.95377 0.98726 1.69782 0.99263 1.34022 1.37900 0.86262 0.78914 0.80842 0.80447 1.19152 1.20212 1.18592 1.21629 0.99666 0.99706 0.89834 0.91202 0.87954 0.92050 0.91251 0.90096 0.91494 0.91233 0.91540 0.91622 0.91771 0.91446 0.91784 0.90612 0.76465 0.89498 0.88900 0.88571 0.90466 0.84860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.56 101.05 1.07 1.41 16 2 O -0.36 -4.51 9.79 -39.27 -0.38 -4.89 16 3 C 0.46 6.45 5.10 36.00 0.18 6.64 16 4 O -0.49 -8.38 15.79 -18.75 -0.30 -8.67 16 5 C -0.08 -0.97 2.04 -92.48 -0.19 -1.16 16 6 H 0.10 0.98 6.63 -51.93 -0.34 0.63 16 7 C -0.11 -1.05 5.18 -25.62 -0.13 -1.18 16 8 C -0.12 -1.04 5.32 -27.44 -0.15 -1.18 16 9 C -0.12 -0.97 5.61 -27.35 -0.15 -1.13 16 10 C -0.12 -1.20 5.26 -29.60 -0.16 -1.36 16 11 C -0.13 -1.56 4.89 -29.60 -0.14 -1.70 16 12 C 0.16 2.28 1.98 -68.54 -0.14 2.14 16 13 H 0.10 1.67 6.35 -51.93 -0.33 1.34 16 14 N -0.74 -12.89 4.21 -55.34 -0.23 -13.13 16 15 C 0.57 12.73 7.77 -12.31 -0.10 12.63 16 16 O -0.54 -13.57 15.95 5.32 0.08 -13.49 16 17 C -0.13 -3.12 5.87 -105.04 -0.62 -3.73 16 18 C -0.22 -4.64 9.55 -38.92 -0.37 -5.01 16 19 C -0.10 -2.09 10.01 -39.72 -0.40 -2.49 16 20 C -0.21 -5.01 9.78 -38.81 -0.38 -5.39 16 21 C 0.10 2.65 5.56 -106.87 -0.59 2.05 16 22 C -0.46 -12.18 9.05 -37.73 -0.34 -12.53 16 23 H 0.08 2.04 7.90 -52.49 -0.41 1.62 16 24 C 0.07 1.86 5.16 -17.34 -0.09 1.77 16 25 N -0.79 -20.89 10.97 55.55 0.61 -20.28 16 26 Si 0.91 18.94 29.59 -169.99 -5.03 13.91 16 27 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 28 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 29 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 30 C -0.09 -2.38 8.23 -38.44 -0.32 -2.70 16 31 H 0.07 0.84 8.13 -51.93 -0.42 0.42 16 32 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.06 0.59 8.13 -51.93 -0.42 0.17 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.08 0.95 7.22 -51.93 -0.37 0.57 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.07 0.70 6.63 -51.93 -0.34 0.35 16 38 H 0.07 0.49 6.98 -51.92 -0.36 0.13 16 39 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.06 0.59 8.14 -51.92 -0.42 0.17 16 41 H 0.07 0.76 7.47 -51.93 -0.39 0.38 16 42 H 0.06 0.67 7.47 -51.93 -0.39 0.28 16 43 H 0.08 1.14 8.12 -51.93 -0.42 0.72 16 44 H 0.40 6.45 4.86 -40.82 -0.20 6.25 16 45 H 0.09 1.59 6.38 -52.48 -0.33 1.25 16 46 H 0.09 1.67 8.06 -52.49 -0.42 1.25 16 47 H 0.10 2.13 8.06 -52.49 -0.42 1.70 16 48 H 0.28 6.95 8.30 -40.82 -0.34 6.61 16 49 H 0.13 3.89 5.80 -52.49 -0.30 3.58 16 LS Contribution 387.71 15.07 5.84 5.84 Total: -1.00 -31.31 387.71 -9.56 -40.87 By element: Atomic # 1 Polarization: 19.90 SS G_CDS: -7.14 Total: 12.75 kcal Atomic # 6 Polarization: -9.90 SS G_CDS: -3.01 Total: -12.91 kcal Atomic # 7 Polarization: -33.79 SS G_CDS: 0.38 Total: -33.41 kcal Atomic # 8 Polarization: -26.46 SS G_CDS: -0.60 Total: -27.05 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -5.03 Total: 13.91 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -31.31 -9.56 -40.87 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089396569.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.675 kcal (2) G-P(sol) polarization free energy of solvation -31.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds