Wall clock time and date at job start Tue Mar 31 2020 07:13:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34224 * 116.99959 * 2 1 4 4 O 1.20828 * 120.00200 * 359.97438 * 3 2 1 5 5 C 1.50698 * 120.00205 * 180.02562 * 3 2 1 6 6 H 1.09004 * 108.84665 * 298.55608 * 5 3 2 7 7 C 1.50471 * 108.87767 * 57.01568 * 5 3 2 8 8 C 1.54247 * 108.51531 * 214.93338 * 7 5 3 9 9 C 1.45545 * 112.40569 * 280.01321 * 8 7 5 10 10 C 1.54236 * 112.40787 * 61.94095 * 9 8 7 11 11 C 1.50401 * 108.42425 * 280.03103 * 10 9 8 12 12 C 1.54060 * 108.87943 * 179.97438 * 5 3 2 13 13 H 1.09003 * 108.81860 * 76.74759 * 12 5 3 14 14 N 1.46503 * 108.81325 * 318.35715 * 12 5 3 15 15 C 1.34780 * 119.99934 * 153.40448 * 14 12 5 16 16 O 1.21544 * 119.99926 * 0.02562 * 15 14 12 17 17 C 1.47877 * 119.99832 * 180.02562 * 15 14 12 18 18 C 1.39921 * 120.02720 * 0.02562 * 17 15 14 19 19 C 1.38327 * 120.36023 * 179.97438 * 18 17 15 20 20 C 1.37751 * 120.41324 * 359.71527 * 19 18 17 21 21 C 1.40753 * 120.03678 * 0.56455 * 20 19 18 22 22 C 1.41443 * 120.17825 * 179.71372 * 21 20 19 23 23 H 1.08000 * 119.99761 * 24.21963 * 22 21 20 24 24 C 1.39930 * 119.99778 * 204.48688 * 22 21 20 25 25 N 1.30827 * 120.00245 * 17.46037 * 24 22 21 26 26 Si 1.86802 * 120.00032 * 197.45438 * 24 22 21 27 27 H 1.48504 * 109.46907 * 90.00320 * 26 24 22 28 28 H 1.48493 * 109.47542 * 210.00198 * 26 24 22 29 29 H 1.48505 * 109.47058 * 330.00544 * 26 24 22 30 30 C 1.38998 * 120.02625 * 180.02562 * 17 15 14 31 31 H 1.09005 * 109.46986 * 299.99753 * 1 2 3 32 32 H 1.08995 * 109.47642 * 60.00163 * 1 2 3 33 33 H 1.09008 * 109.47128 * 180.02562 * 1 2 3 34 34 H 1.09001 * 109.63277 * 334.64076 * 7 5 3 35 35 H 1.09002 * 109.63002 * 95.22518 * 7 5 3 36 36 H 1.08993 * 108.89633 * 40.76822 * 8 7 5 37 37 H 1.09003 * 108.89104 * 159.36107 * 8 7 5 38 38 H 1.08999 * 108.89329 * 182.69022 * 9 8 7 39 39 H 1.08997 * 108.89470 * 301.18099 * 9 8 7 40 40 H 1.09003 * 109.62821 * 39.71433 * 10 9 8 41 41 H 1.08998 * 109.63095 * 160.10497 * 10 9 8 42 42 H 1.08994 * 108.94693 * 333.43458 * 11 10 9 43 43 H 1.09002 * 108.76684 * 215.01225 * 11 10 9 44 44 H 0.96996 * 119.99965 * 333.41616 * 14 12 5 45 45 H 1.08002 * 119.82092 * 359.95963 * 18 17 15 46 46 H 1.07997 * 119.79794 * 179.97438 * 19 18 17 47 47 H 1.08003 * 119.98585 * 180.30179 * 20 19 18 48 48 H 0.97001 * 120.00023 * 179.97438 * 25 24 22 49 49 H 1.08003 * 120.20253 * 0.02562 * 30 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9441 0.8007 0.9053 7 6 4.0926 0.5266 -1.1952 8 6 5.4230 -0.1484 -0.8033 9 6 6.5449 0.7784 -0.8320 10 6 6.3770 1.9361 0.1732 11 6 5.4536 2.9588 -0.4296 12 6 3.9878 2.7567 -0.0011 13 1 3.8568 3.1599 1.0031 14 7 3.1199 3.4944 -0.9224 15 6 2.8991 4.8104 -0.7324 16 8 3.4205 5.3851 0.2031 17 6 2.0226 5.5548 -1.6620 18 6 1.4218 4.8936 -2.7388 19 6 0.6003 5.5831 -3.6124 20 6 0.3594 6.9270 -3.4293 21 6 0.9597 7.6104 -2.3552 22 6 0.7193 8.9916 -2.1679 23 1 -0.1799 9.4415 -2.5622 24 6 1.6491 9.7762 -1.4766 25 7 2.8708 9.3417 -1.3025 26 14 1.1461 11.4441 -0.8024 27 1 0.6269 11.2833 0.5796 28 1 2.3245 12.3475 -0.7864 29 1 0.0868 12.0275 -1.6643 30 6 1.7950 6.9121 -1.4669 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3634 -1.0277 0.0005 34 1 3.3720 -0.2331 -1.4982 35 1 4.2630 1.2221 -2.0170 36 1 5.3285 -0.5571 0.2027 37 1 5.6230 -0.9642 -1.4980 38 1 7.4586 0.2339 -0.5939 39 1 6.6347 1.1928 -1.8361 40 1 5.9482 1.5565 1.1006 41 1 7.3478 2.3881 0.3766 42 1 5.5151 2.8945 -1.5160 43 1 5.7786 3.9516 -0.1181 44 1 2.7040 3.0358 -1.6691 45 1 1.6006 3.8391 -2.8889 46 1 0.1415 5.0638 -4.4407 47 1 -0.2871 7.4575 -4.1127 48 1 3.5154 9.8858 -0.8237 49 1 2.2570 7.4267 -0.6373 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089396571.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:30 Heat of formation + Delta-G solvation = -107.811369 kcal Electronic energy + Delta-G solvation = -31316.298764 eV Core-core repulsion = 27207.795660 eV Total energy + Delta-G solvation = -4108.503104 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.11429 -39.31682 -38.29861 -36.85952 -36.48334 -34.13177 -33.63853 -32.65726 -31.22755 -29.67093 -29.31698 -27.89822 -25.39579 -25.36199 -24.68906 -22.39522 -21.65420 -20.88390 -20.77490 -19.45471 -19.25727 -17.75576 -17.65943 -16.95177 -16.43770 -16.00503 -15.58452 -15.27780 -14.99841 -14.81773 -14.55776 -14.03334 -13.89789 -13.73320 -13.47107 -13.28791 -13.19345 -13.02748 -12.84326 -12.58382 -12.40331 -12.22522 -12.21394 -11.88084 -11.57843 -11.15112 -11.09303 -11.01600 -10.97109 -10.86546 -10.82509 -10.68247 -10.58142 -10.49381 -10.43211 -10.10763 -9.92051 -9.60990 -9.15473 -8.87053 -8.40564 -7.52646 -7.43505 -6.73142 -4.34397 2.18811 2.33706 2.56414 2.88451 3.11526 3.14613 3.21633 3.74803 3.96217 4.00502 4.28094 4.42761 4.49220 4.72795 4.81538 4.85779 4.94916 5.00205 5.05568 5.09547 5.13454 5.28861 5.35942 5.42338 5.61431 5.66860 5.70063 5.76613 5.80314 5.88688 5.91491 5.98195 6.09572 6.14223 6.15479 6.25868 6.34373 6.35639 6.39191 6.79193 7.01361 7.06677 7.11951 7.29193 7.46908 7.73484 7.79068 7.85829 8.01175 8.20881 8.29133 8.58911 8.87673 8.91745 9.12883 10.21602 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013645 B = 0.003128 C = 0.002803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2051.600255 B = 8949.294086 C = 9988.064997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.363 6.363 3 C 0.448 3.552 4 O -0.472 6.472 5 C -0.082 4.082 6 H 0.116 0.884 7 C -0.117 4.117 8 C -0.112 4.112 9 C -0.123 4.123 10 C -0.116 4.116 11 C -0.129 4.129 12 C 0.166 3.834 13 H 0.088 0.912 14 N -0.717 5.717 15 C 0.573 3.427 16 O -0.552 6.552 17 C -0.122 4.122 18 C -0.211 4.211 19 C -0.100 4.100 20 C -0.213 4.213 21 C 0.099 3.901 22 C -0.462 4.462 23 H 0.080 0.920 24 C 0.074 3.926 25 N -0.784 5.784 26 Si 0.910 3.090 27 H -0.267 1.267 28 H -0.277 1.277 29 H -0.262 1.262 30 C -0.093 4.093 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.098 0.902 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.063 0.937 37 H 0.064 0.936 38 H 0.059 0.941 39 H 0.063 0.937 40 H 0.065 0.935 41 H 0.067 0.933 42 H 0.068 0.932 43 H 0.075 0.925 44 H 0.395 0.605 45 H 0.085 0.915 46 H 0.091 0.909 47 H 0.094 0.906 48 H 0.283 0.717 49 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.360 -20.190 1.899 20.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.281 6.281 3 C 0.289 3.711 4 O -0.356 6.356 5 C -0.102 4.102 6 H 0.134 0.866 7 C -0.154 4.154 8 C -0.150 4.150 9 C -0.160 4.160 10 C -0.154 4.154 11 C -0.168 4.168 12 C 0.060 3.940 13 H 0.106 0.894 14 N -0.369 5.369 15 C 0.364 3.636 16 O -0.430 6.430 17 C -0.125 4.125 18 C -0.231 4.231 19 C -0.118 4.118 20 C -0.233 4.233 21 C 0.096 3.904 22 C -0.491 4.491 23 H 0.098 0.902 24 C -0.145 4.145 25 N -0.409 5.409 26 Si 0.734 3.266 27 H -0.192 1.192 28 H -0.203 1.203 29 H -0.186 1.186 30 C -0.113 4.113 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.116 0.884 34 H 0.097 0.903 35 H 0.096 0.904 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.078 0.922 39 H 0.081 0.919 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.087 0.913 43 H 0.093 0.907 44 H 0.231 0.769 45 H 0.104 0.896 46 H 0.109 0.891 47 H 0.113 0.887 48 H 0.094 0.906 49 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 4.725 -19.384 2.669 20.129 hybrid contribution -0.637 0.501 -0.074 0.814 sum 4.087 -18.883 2.595 19.494 Atomic orbital electron populations 1.23244 0.76400 1.03338 1.02856 1.86464 1.23307 1.33731 1.84581 1.23804 0.92042 0.81594 0.73687 1.90847 1.66757 1.35543 1.42477 1.21309 0.87489 0.98502 1.02885 0.86600 1.21458 0.97822 0.99638 0.96522 1.20450 0.94153 0.98372 1.01983 1.20559 0.98270 0.97079 1.00103 1.21321 0.99641 0.95892 0.98542 1.21752 0.93124 1.00366 1.01532 1.21106 0.89686 0.87192 0.96036 0.89412 1.45840 1.50201 1.09802 1.31059 1.18666 0.79789 0.80798 0.84355 1.90664 1.51494 1.68578 1.32314 1.19473 1.01169 0.94970 0.96932 1.20298 1.06053 0.97136 0.99583 1.20409 0.98741 0.94676 0.98021 1.21074 1.07762 0.94409 1.00026 1.17595 0.90152 0.93283 0.89340 1.19577 1.05454 0.92969 1.31111 0.90180 1.25943 0.94037 1.00521 0.94012 1.69798 1.02857 1.38021 1.30216 0.86286 0.79158 0.80934 0.80198 1.19200 1.20267 1.18638 1.21629 0.99415 0.90668 0.99599 0.91955 0.91706 0.88352 0.90254 0.90391 0.91811 0.91725 0.92182 0.91851 0.91650 0.91458 0.91317 0.90661 0.76921 0.89650 0.89116 0.88742 0.90554 0.84888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.33 10.56 101.05 1.07 1.39 16 2 O -0.36 -4.03 9.92 -39.24 -0.39 -4.42 16 3 C 0.45 5.84 6.72 36.00 0.24 6.08 16 4 O -0.47 -8.13 13.66 -18.75 -0.26 -8.38 16 5 C -0.08 -0.88 1.90 -92.48 -0.18 -1.05 16 6 H 0.12 1.00 6.62 -51.93 -0.34 0.66 16 7 C -0.12 -1.01 5.11 -27.34 -0.14 -1.14 16 8 C -0.11 -0.78 5.26 -29.59 -0.16 -0.93 16 9 C -0.12 -0.93 5.26 -29.60 -0.16 -1.08 16 10 C -0.12 -1.06 5.61 -27.38 -0.15 -1.21 16 11 C -0.13 -1.61 4.83 -27.48 -0.13 -1.75 16 12 C 0.17 2.34 1.91 -66.83 -0.13 2.21 16 13 H 0.09 1.44 7.54 -51.93 -0.39 1.05 16 14 N -0.72 -12.64 2.92 -53.67 -0.16 -12.79 16 15 C 0.57 13.23 7.70 -12.31 -0.09 13.13 16 16 O -0.55 -14.31 15.98 5.33 0.09 -14.22 16 17 C -0.12 -3.06 5.87 -105.04 -0.62 -3.67 16 18 C -0.21 -4.73 9.55 -38.92 -0.37 -5.10 16 19 C -0.10 -2.25 10.01 -39.73 -0.40 -2.65 16 20 C -0.21 -5.26 9.78 -38.81 -0.38 -5.64 16 21 C 0.10 2.71 5.57 -106.87 -0.60 2.12 16 22 C -0.46 -12.53 9.05 -37.73 -0.34 -12.87 16 23 H 0.08 2.06 7.91 -52.49 -0.41 1.65 16 24 C 0.07 1.92 5.14 -17.35 -0.09 1.83 16 25 N -0.78 -21.32 10.95 55.55 0.61 -20.71 16 26 Si 0.91 19.34 29.59 -169.99 -5.03 14.31 16 27 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 28 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 29 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 30 C -0.09 -2.59 8.24 -38.44 -0.32 -2.91 16 31 H 0.06 0.61 8.13 -51.93 -0.42 0.19 16 32 H 0.06 0.64 8.13 -51.93 -0.42 0.21 16 33 H 0.10 0.60 8.14 -51.92 -0.42 0.18 16 34 H 0.08 0.65 7.23 -51.93 -0.38 0.27 16 35 H 0.08 0.73 6.97 -51.93 -0.36 0.37 16 36 H 0.06 0.40 7.47 -51.93 -0.39 0.01 16 37 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.06 0.51 7.47 -51.93 -0.39 0.12 16 40 H 0.06 0.55 6.97 -51.93 -0.36 0.19 16 41 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.07 0.85 6.60 -51.93 -0.34 0.51 16 43 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 44 H 0.40 6.50 5.73 -40.82 -0.23 6.27 16 45 H 0.09 1.65 6.38 -52.49 -0.33 1.32 16 46 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 47 H 0.09 2.17 8.06 -52.48 -0.42 1.75 16 48 H 0.28 7.08 8.30 -40.82 -0.34 6.74 16 49 H 0.13 3.99 5.74 -52.48 -0.30 3.69 16 LS Contribution 386.43 15.07 5.82 5.82 Total: -1.00 -32.54 386.43 -9.43 -41.97 By element: Atomic # 1 Polarization: 18.85 SS G_CDS: -7.18 Total: 11.68 kcal Atomic # 6 Polarization: -10.32 SS G_CDS: -2.93 Total: -13.25 kcal Atomic # 7 Polarization: -33.96 SS G_CDS: 0.45 Total: -33.50 kcal Atomic # 8 Polarization: -26.46 SS G_CDS: -0.56 Total: -27.02 kcal Atomic # 14 Polarization: 19.34 SS G_CDS: -5.03 Total: 14.31 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.54 -9.43 -41.97 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089396571.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.843 kcal (2) G-P(sol) polarization free energy of solvation -32.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds