Wall clock time and date at job start Tue Mar 31 2020 07:03:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.46777 * 2 1 4 4 C 1.50692 * 109.47198 * 120.00101 * 2 1 3 5 5 H 1.08001 * 120.00380 * 119.99743 * 4 2 1 6 6 C 1.37885 * 120.00267 * 299.99978 * 4 2 1 7 7 N 1.31512 * 120.00301 * 179.97438 * 6 4 2 8 8 Si 1.86803 * 119.99535 * 0.02562 * 6 4 2 9 9 H 1.48496 * 109.47153 * 89.99956 * 8 6 4 10 10 H 1.48499 * 109.46748 * 210.00019 * 8 6 4 11 11 H 1.48493 * 109.47202 * 329.99719 * 8 6 4 12 12 N 1.46501 * 109.47084 * 239.99995 * 2 1 3 13 13 C 1.46491 * 120.00158 * 300.00352 * 12 2 1 14 14 C 1.34783 * 119.99720 * 119.99987 * 12 2 1 15 15 O 1.21588 * 120.00205 * 359.97438 * 14 12 2 16 16 N 1.34768 * 119.99576 * 180.02562 * 14 12 2 17 17 C 1.40091 * 119.99743 * 185.29834 * 16 14 12 18 18 C 1.38875 * 119.99873 * 213.30768 * 17 16 14 19 19 C 1.38038 * 119.99797 * 179.97438 * 18 17 16 20 20 C 1.38871 * 120.00355 * 359.97438 * 19 18 17 21 21 N 1.40176 * 120.00214 * 179.97438 * 20 19 18 22 22 N 1.40166 * 126.35190 * 359.97438 * 21 20 19 23 23 C 1.29447 * 108.13102 * 180.02562 * 22 21 20 24 24 N 1.37342 * 108.82494 * 359.97438 * 23 22 21 25 25 C 1.46503 * 125.82872 * 180.02562 * 24 23 22 26 26 C 1.34809 * 108.34040 * 0.02562 * 24 23 22 27 27 O 1.21800 * 126.29780 * 180.02562 * 26 24 23 28 28 C 1.38877 * 119.99781 * 0.25718 * 20 19 18 29 29 C 1.38047 * 119.99561 * 359.48533 * 28 20 19 30 30 H 1.08997 * 109.47205 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47269 * 300.00165 * 1 2 3 32 32 H 1.09002 * 109.47205 * 59.99997 * 1 2 3 33 33 H 0.96993 * 119.99901 * 179.97438 * 7 6 4 34 34 H 1.09004 * 109.47015 * 269.99818 * 13 12 2 35 35 H 1.08996 * 109.47500 * 29.99824 * 13 12 2 36 36 H 1.08997 * 109.47369 * 149.99998 * 13 12 2 37 37 H 0.96995 * 120.00656 * 5.29891 * 16 14 12 38 38 H 1.07996 * 119.99830 * 359.95447 * 18 17 16 39 39 H 1.08006 * 119.99647 * 180.02562 * 19 18 17 40 40 H 1.08003 * 125.58958 * 179.73457 * 23 22 21 41 41 H 1.08997 * 109.47138 * 0.02562 * 25 24 23 42 42 H 1.09007 * 109.46650 * 120.02240 * 25 24 23 43 43 H 1.08999 * 109.47000 * 240.01816 * 25 24 23 44 44 H 1.08001 * 120.00260 * 179.72589 * 28 20 19 45 45 H 1.07998 * 119.99532 * 180.23565 * 29 28 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4828 7 7 2.1373 -0.8596 3.5565 8 14 0.6247 1.2790 2.6541 9 1 -0.8028 0.8726 2.6998 10 1 0.9759 1.9950 3.9068 11 1 0.8470 2.1764 1.4921 12 7 2.0183 -0.6906 -1.1962 13 6 1.6644 -2.0931 -1.4281 14 6 2.7932 -0.0355 -2.0833 15 8 3.0866 1.1287 -1.8912 16 7 3.2420 -0.6707 -3.1840 17 6 4.1364 -0.0266 -4.0486 18 6 4.0875 -0.2802 -5.4131 19 6 4.9685 0.3549 -6.2652 20 6 5.9034 1.2479 -5.7580 21 7 6.7983 1.8924 -6.6232 22 7 6.8678 1.7355 -8.0143 23 6 7.8184 2.4936 -8.4582 24 7 8.3884 3.1561 -7.3987 25 6 9.4975 4.1098 -7.4799 26 6 7.7529 2.7788 -6.2712 27 8 7.9953 3.1672 -5.1425 28 6 5.9554 1.4979 -4.3929 29 6 5.0708 0.8667 -3.5415 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.9032 -0.5280 4.4375 34 1 2.4157 -2.7376 -0.9717 35 1 0.6904 -2.3001 -0.9848 36 1 1.6238 -2.2851 -2.5002 37 1 2.9458 -1.5738 -3.3775 38 1 3.3605 -0.9746 -5.8076 39 1 4.9302 0.1579 -7.3264 40 1 8.1173 2.5869 -9.4919 41 1 9.8080 4.2183 -8.5191 42 1 9.1741 5.0767 -7.0944 43 1 10.3355 3.7439 -6.8866 44 1 6.6853 2.1890 -3.9979 45 1 5.1088 1.0640 -2.4804 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092837833.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:50 Heat of formation + Delta-G solvation = 83.437527 kcal Electronic energy + Delta-G solvation = -29513.670108 eV Core-core repulsion = 25342.212586 eV Total energy + Delta-G solvation = -4171.457522 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.93282 -40.36206 -38.77019 -37.64137 -36.19635 -35.36480 -34.22286 -32.72647 -31.72927 -30.91699 -30.29924 -28.64574 -27.41922 -26.33197 -25.11382 -24.20514 -23.27855 -22.35927 -21.28918 -20.94030 -19.14784 -18.52933 -17.98514 -17.25855 -17.09762 -16.61784 -16.42005 -16.07947 -15.60544 -15.40441 -15.01308 -14.50895 -14.30029 -14.08896 -14.01868 -13.43615 -13.35487 -13.27295 -13.10713 -13.04436 -12.86475 -12.75629 -12.44550 -12.23263 -12.08249 -11.82060 -11.70526 -11.51257 -11.24903 -11.09755 -10.67367 -10.27931 -10.14045 -9.93559 -9.66015 -9.51888 -9.26418 -9.14116 -8.87701 -8.62654 -7.86942 -7.47074 -6.13608 -4.14280 1.02732 1.36782 1.44365 1.71842 2.44853 2.69726 3.06900 3.24594 3.38882 3.42024 3.59144 3.97063 4.00319 4.28613 4.34604 4.36404 4.57853 4.76772 4.94976 5.01090 5.02564 5.18886 5.29346 5.34176 5.46937 5.48014 5.59519 5.81072 5.89823 5.99954 6.11938 6.15153 6.24007 6.32028 6.35659 6.39606 6.48378 6.52762 6.69848 6.83778 6.88471 7.16251 7.29207 7.32120 7.52796 7.63339 7.71493 8.34708 8.49781 8.87433 9.06407 9.47302 10.99105 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.020528 B = 0.002233 C = 0.002094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.653176 B =12536.504430 C =13367.880931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.244 3.756 3 H 0.065 0.935 4 C -0.527 4.527 5 H 0.079 0.921 6 C 0.075 3.925 7 N -0.895 5.895 8 Si 0.883 3.117 9 H -0.277 1.277 10 H -0.294 1.294 11 H -0.262 1.262 12 N -0.598 5.598 13 C 0.087 3.913 14 C 0.699 3.301 15 O -0.578 6.578 16 N -0.692 5.692 17 C 0.173 3.827 18 C -0.135 4.135 19 C -0.104 4.104 20 C 0.146 3.854 21 N -0.388 5.388 22 N -0.279 5.279 23 C 0.258 3.742 24 N -0.562 5.562 25 C 0.101 3.899 26 C 0.643 3.357 27 O -0.534 6.534 28 C -0.116 4.116 29 C -0.095 4.095 30 H 0.056 0.944 31 H 0.051 0.949 32 H 0.033 0.967 33 H 0.266 0.734 34 H 0.055 0.945 35 H 0.078 0.922 36 H 0.047 0.953 37 H 0.404 0.596 38 H 0.132 0.868 39 H 0.136 0.864 40 H 0.235 0.765 41 H 0.094 0.906 42 H 0.079 0.921 43 H 0.079 0.921 44 H 0.153 0.847 45 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.231 3.021 -28.286 30.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.142 3.858 3 H 0.083 0.917 4 C -0.566 4.566 5 H 0.097 0.903 6 C -0.127 4.127 7 N -0.532 5.532 8 Si 0.712 3.288 9 H -0.204 1.204 10 H -0.221 1.221 11 H -0.187 1.187 12 N -0.332 5.332 13 C -0.057 4.057 14 C 0.401 3.599 15 O -0.455 6.455 16 N -0.342 5.342 17 C 0.076 3.924 18 C -0.157 4.157 19 C -0.125 4.125 20 C 0.054 3.946 21 N -0.200 5.200 22 N -0.100 5.100 23 C -0.040 4.040 24 N -0.292 5.292 25 C -0.041 4.041 26 C 0.343 3.657 27 O -0.406 6.406 28 C -0.137 4.137 29 C -0.116 4.116 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.053 0.947 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.097 0.903 36 H 0.066 0.934 37 H 0.241 0.759 38 H 0.149 0.851 39 H 0.154 0.846 40 H 0.251 0.749 41 H 0.113 0.887 42 H 0.098 0.902 43 H 0.098 0.902 44 H 0.170 0.830 45 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 9.835 3.453 -27.233 29.160 hybrid contribution -0.198 0.694 0.179 0.744 sum 9.637 4.147 -27.054 29.017 Atomic orbital electron populations 1.22482 0.99146 1.01051 0.99365 1.19244 0.89758 0.95036 0.81761 0.91719 1.21156 1.32699 1.14283 0.88424 0.90335 1.24860 0.95697 0.96573 0.95613 1.69869 1.45209 1.40164 0.97968 0.86923 0.80364 0.83883 0.77584 1.20421 1.22134 1.18705 1.47181 1.51364 1.11676 1.23001 1.21551 1.02439 0.83032 0.98662 1.15915 0.79575 0.84867 0.79566 1.90894 1.62579 1.15294 1.76728 1.42947 1.47871 1.18659 1.24691 1.17635 0.90214 0.95786 0.88791 1.20630 1.01011 1.03314 0.90755 1.20456 0.95013 0.96725 1.00265 1.17260 0.92344 0.97367 0.87645 1.45898 1.30939 1.39171 1.03997 1.77040 1.19975 1.22708 0.90276 1.26079 0.91153 0.90864 0.95926 1.45942 1.33993 1.41888 1.07342 1.21848 0.86718 0.91436 1.04106 1.16687 0.81764 0.82204 0.85022 1.91055 1.69875 1.61551 1.18104 1.21264 1.00822 1.01443 0.90203 1.21171 0.92360 0.96571 1.01516 0.92533 0.93027 0.94744 0.92426 0.92595 0.90313 0.93418 0.75851 0.85052 0.84604 0.74863 0.88698 0.90246 0.90247 0.83005 0.83336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.48 8.65 37.16 0.32 -3.16 16 2 C 0.24 5.90 2.23 -69.08 -0.15 5.75 16 3 H 0.07 1.75 5.96 -51.93 -0.31 1.44 16 4 C -0.53 -14.58 8.95 -34.44 -0.31 -14.89 16 5 H 0.08 2.34 7.89 -52.49 -0.41 1.92 16 6 C 0.08 2.16 5.45 -17.82 -0.10 2.06 16 7 N -0.89 -27.03 13.96 55.43 0.77 -26.26 16 8 Si 0.88 21.98 24.37 -169.99 -4.14 17.84 16 9 H -0.28 -6.58 6.87 56.52 0.39 -6.19 16 10 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 11 H -0.26 -6.48 6.53 56.52 0.37 -6.11 16 12 N -0.60 -12.26 2.75 -181.02 -0.50 -12.75 16 13 C 0.09 1.37 9.49 59.84 0.57 1.93 16 14 C 0.70 14.29 8.02 -86.92 -0.70 13.59 16 15 O -0.58 -13.99 13.35 5.29 0.07 -13.92 16 16 N -0.69 -10.87 5.22 -14.19 -0.07 -10.94 16 17 C 0.17 2.68 6.28 -83.61 -0.53 2.15 16 18 C -0.14 -1.69 9.96 -39.42 -0.39 -2.08 16 19 C -0.10 -1.30 9.66 -39.42 -0.38 -1.69 16 20 C 0.15 2.12 6.69 -83.57 -0.56 1.57 16 21 N -0.39 -5.16 3.80 -14.07 -0.05 -5.21 16 22 N -0.28 -2.77 11.84 29.87 0.35 -2.42 16 23 C 0.26 1.47 12.61 -89.10 -1.12 0.35 16 24 N -0.56 -4.46 3.14 -130.10 -0.41 -4.87 16 25 C 0.10 0.37 11.08 59.85 0.66 1.04 16 26 C 0.64 8.54 8.48 -86.74 -0.74 7.80 16 27 O -0.53 -8.82 15.13 5.10 0.08 -8.74 16 28 C -0.12 -1.89 9.39 -39.41 -0.37 -2.26 16 29 C -0.09 -1.65 8.65 -39.42 -0.34 -1.99 16 30 H 0.06 1.11 6.66 -51.93 -0.35 0.77 16 31 H 0.05 1.16 3.27 -51.93 -0.17 0.99 16 32 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 34 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.08 1.23 6.43 -51.93 -0.33 0.89 16 36 H 0.05 0.55 6.29 -51.93 -0.33 0.22 16 37 H 0.40 4.92 6.51 -40.82 -0.27 4.65 16 38 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 39 H 0.14 1.45 7.71 -52.48 -0.40 1.05 16 40 H 0.24 -0.12 8.06 -52.48 -0.42 -0.54 16 41 H 0.09 -0.03 8.07 -51.93 -0.42 -0.45 16 42 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 44 H 0.15 2.63 5.50 -52.49 -0.29 2.35 16 45 H 0.15 2.94 6.41 -52.49 -0.34 2.60 16 LS Contribution 367.33 15.07 5.54 5.54 Total: -1.00 -38.55 367.33 -7.83 -46.38 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -5.33 Total: 5.17 kcal Atomic # 6 Polarization: 14.32 SS G_CDS: -4.13 Total: 10.19 kcal Atomic # 7 Polarization: -62.55 SS G_CDS: 0.09 Total: -62.45 kcal Atomic # 8 Polarization: -22.80 SS G_CDS: 0.15 Total: -22.66 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.14 Total: 17.84 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -38.55 -7.83 -46.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092837833.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.821 kcal (2) G-P(sol) polarization free energy of solvation -38.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds