Wall clock time and date at job start Tue Mar 31 2020 07:03:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.47294 * 2 1 4 4 C 1.50702 * 109.47336 * 239.99742 * 2 1 3 5 5 H 1.08003 * 119.99900 * 240.00485 * 4 2 1 6 6 C 1.37874 * 119.99811 * 59.99950 * 4 2 1 7 7 N 1.31514 * 120.00095 * 0.02562 * 6 4 2 8 8 Si 1.86807 * 119.99742 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.46890 * 60.00079 * 8 6 4 10 10 H 1.48501 * 109.46759 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.46737 * 300.00107 * 8 6 4 12 12 N 1.46502 * 109.46697 * 119.99804 * 2 1 3 13 13 C 1.46501 * 120.00402 * 60.00175 * 12 2 1 14 14 C 1.34781 * 119.99929 * 239.99919 * 12 2 1 15 15 O 1.21595 * 119.99709 * 359.97438 * 14 12 2 16 16 N 1.34778 * 120.00094 * 180.02562 * 14 12 2 17 17 C 1.40081 * 119.99795 * 175.58899 * 16 14 12 18 18 C 1.38878 * 119.99610 * 214.80852 * 17 16 14 19 19 C 1.38039 * 119.99928 * 179.76280 * 18 17 16 20 20 C 1.38876 * 120.00139 * 0.50886 * 19 18 17 21 21 N 1.40175 * 120.00291 * 179.71995 * 20 19 18 22 22 N 1.40170 * 126.35049 * 180.02562 * 21 20 19 23 23 C 1.29450 * 108.12802 * 180.02562 * 22 21 20 24 24 N 1.37345 * 108.82797 * 0.02562 * 23 22 21 25 25 C 1.46497 * 125.83022 * 179.97438 * 24 23 22 26 26 C 1.34822 * 108.33529 * 359.73408 * 24 23 22 27 27 O 1.21801 * 126.29327 * 180.28120 * 26 24 23 28 28 C 1.38882 * 119.99429 * 359.74716 * 20 19 18 29 29 C 1.38033 * 120.00093 * 359.97438 * 28 20 19 30 30 H 1.09003 * 109.46575 * 60.00488 * 1 2 3 31 31 H 1.08996 * 109.47294 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47242 * 300.00369 * 1 2 3 33 33 H 0.97003 * 119.99656 * 180.02562 * 7 6 4 34 34 H 1.09001 * 109.46832 * 269.99914 * 13 12 2 35 35 H 1.09001 * 109.46674 * 29.99688 * 13 12 2 36 36 H 1.08996 * 109.47226 * 149.99792 * 13 12 2 37 37 H 0.96997 * 120.00123 * 355.30039 * 16 14 12 38 38 H 1.07994 * 119.99789 * 0.02562 * 18 17 16 39 39 H 1.08000 * 119.99621 * 180.27681 * 19 18 17 40 40 H 1.08003 * 125.58569 * 179.97438 * 23 22 21 41 41 H 1.08997 * 109.47474 * 359.97438 * 25 24 23 42 42 H 1.09003 * 109.46536 * 119.97605 * 25 24 23 43 43 H 1.09000 * 109.47325 * 239.97443 * 25 24 23 44 44 H 1.08002 * 119.99436 * 180.02562 * 28 20 19 45 45 H 1.08003 * 119.99788 * 179.97438 * 29 28 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1313 6 6 1.6994 -0.2395 -2.4827 7 7 0.9437 0.8301 -2.6034 8 14 2.3215 -1.1206 -4.0079 9 1 1.8260 -2.5204 -4.0075 10 1 1.8271 -0.4201 -5.2204 11 1 3.8066 -1.1211 -4.0080 12 7 2.0183 -0.6906 1.1962 13 6 1.6644 -2.0932 1.4282 14 6 2.7931 -0.0356 2.0834 15 8 3.0873 1.1284 1.8907 16 7 3.2427 -0.6710 3.1837 17 6 4.1226 -0.0201 4.0580 18 6 5.1150 -0.7414 4.7088 19 6 5.9851 -0.0991 5.5666 20 6 5.8615 1.2664 5.7871 21 7 6.7413 1.9176 6.6627 22 7 6.7372 3.2825 6.9818 23 6 7.6978 3.5027 7.8212 24 7 8.3469 2.3187 8.0727 25 6 9.4923 2.1422 8.9688 26 6 7.7465 1.3458 7.3581 27 8 8.0561 0.1679 7.3414 28 6 4.8656 1.9867 5.1404 29 6 3.9992 1.3455 4.2782 30 1 -0.3632 0.5138 -0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8900 33 1 0.7090 1.1612 -3.4845 34 1 0.7375 -2.1443 1.9995 35 1 1.5295 -2.5968 0.4710 36 1 2.4628 -2.5818 1.9865 37 1 2.9538 -1.5775 3.3723 38 1 5.2087 -1.8040 4.5404 39 1 6.7597 -0.6594 6.0692 40 1 7.9484 4.4607 8.2523 41 1 9.7579 3.1017 9.4125 42 1 9.2310 1.4369 9.7577 43 1 10.3403 1.7565 8.4029 44 1 4.7697 3.0488 5.3115 45 1 3.2245 1.9056 3.7756 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092837834.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:55 Heat of formation + Delta-G solvation = 73.741955 kcal Electronic energy + Delta-G solvation = -29382.352876 eV Core-core repulsion = 25210.474923 eV Total energy + Delta-G solvation = -4171.877954 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.92262 -40.25303 -38.67245 -37.64237 -36.07645 -35.22717 -34.14037 -32.79557 -31.65728 -30.88203 -29.51743 -28.48081 -27.38413 -26.13072 -25.20944 -24.02539 -23.47821 -21.90823 -21.51275 -20.80644 -19.13484 -18.50075 -17.82681 -17.25540 -16.95691 -16.60238 -16.29071 -15.89730 -15.54896 -15.16990 -14.95034 -14.39063 -14.29457 -14.10486 -13.98916 -13.36683 -13.32242 -13.27257 -13.07470 -12.91316 -12.72162 -12.53025 -12.43277 -12.04210 -11.64350 -11.50726 -11.46743 -11.15780 -11.02625 -10.84804 -10.68522 -10.33049 -10.24224 -10.15692 -9.89868 -9.34124 -9.15944 -9.10985 -8.81263 -8.41895 -7.75889 -7.40322 -6.06512 -4.14285 1.06346 1.38308 1.49764 1.75420 2.44696 2.71440 3.19240 3.28885 3.34149 3.37291 3.69128 3.98802 4.05235 4.31613 4.36962 4.54716 4.59194 4.75005 4.96591 5.00695 5.10956 5.24764 5.33523 5.40333 5.47609 5.58632 5.70791 5.82535 5.95970 5.97880 6.20549 6.28652 6.39223 6.47860 6.58005 6.71551 6.75000 6.82046 7.03062 7.16720 7.22313 7.32093 7.46892 7.68897 7.70661 7.82807 8.07126 8.21844 8.62958 8.86102 9.20559 9.52387 10.98773 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.022594 B = 0.002038 C = 0.002029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.953116 B =13733.140155 C =13797.697027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.272 3.728 3 H 0.065 0.935 4 C -0.527 4.527 5 H 0.059 0.941 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.899 3.101 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 N -0.603 5.603 13 C 0.083 3.917 14 C 0.696 3.304 15 O -0.578 6.578 16 N -0.695 5.695 17 C 0.172 3.828 18 C -0.131 4.131 19 C -0.119 4.119 20 C 0.144 3.856 21 N -0.387 5.387 22 N -0.275 5.275 23 C 0.257 3.743 24 N -0.562 5.562 25 C 0.101 3.899 26 C 0.644 3.356 27 O -0.540 6.540 28 C -0.102 4.102 29 C -0.100 4.100 30 H 0.094 0.906 31 H 0.029 0.971 32 H 0.011 0.989 33 H 0.264 0.736 34 H 0.044 0.956 35 H 0.085 0.915 36 H 0.047 0.953 37 H 0.403 0.597 38 H 0.132 0.868 39 H 0.152 0.848 40 H 0.236 0.764 41 H 0.095 0.905 42 H 0.078 0.922 43 H 0.078 0.922 44 H 0.136 0.864 45 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.096 1.854 24.199 27.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.172 3.828 3 H 0.083 0.917 4 C -0.565 4.565 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.525 5.525 8 Si 0.727 3.273 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.203 1.203 12 N -0.337 5.337 13 C -0.062 4.062 14 C 0.398 3.602 15 O -0.456 6.456 16 N -0.344 5.344 17 C 0.075 3.925 18 C -0.153 4.153 19 C -0.141 4.141 20 C 0.052 3.948 21 N -0.198 5.198 22 N -0.095 5.095 23 C -0.042 4.042 24 N -0.292 5.292 25 C -0.041 4.041 26 C 0.344 3.656 27 O -0.413 6.413 28 C -0.123 4.123 29 C -0.121 4.121 30 H 0.112 0.888 31 H 0.048 0.952 32 H 0.030 0.970 33 H 0.074 0.926 34 H 0.062 0.938 35 H 0.104 0.896 36 H 0.066 0.934 37 H 0.240 0.760 38 H 0.150 0.850 39 H 0.169 0.831 40 H 0.252 0.748 41 H 0.113 0.887 42 H 0.097 0.903 43 H 0.097 0.903 44 H 0.154 0.846 45 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 11.608 2.356 23.231 26.077 hybrid contribution 0.861 -1.199 -0.340 1.514 sum 12.469 1.157 22.891 26.093 Atomic orbital electron populations 1.22103 0.98157 0.99401 1.00846 1.18903 0.90668 0.94356 0.78859 0.91671 1.21284 1.31878 1.13082 0.90295 0.92320 1.24885 0.94959 0.95004 0.98934 1.69869 1.36259 1.22508 1.23878 0.86544 0.79251 0.79523 0.81982 1.20260 1.21170 1.20267 1.47616 1.50940 1.11497 1.23670 1.21564 0.98353 0.83511 1.02736 1.15998 0.79641 0.85063 0.79471 1.90865 1.62408 1.15227 1.77084 1.42975 1.48984 1.18554 1.23875 1.17662 0.90770 0.92433 0.91611 1.20685 0.94371 1.00335 0.99894 1.21037 1.01022 0.91967 1.00032 1.17272 0.92231 0.91092 0.94177 1.45913 1.28807 1.05134 1.39970 1.77116 1.20610 0.94837 1.16964 1.26114 0.89966 0.92627 0.95453 1.45937 1.31700 1.08525 1.43006 1.21835 0.85619 1.03986 0.92621 1.16662 0.81840 0.85441 0.81648 1.91012 1.69274 1.12069 1.68976 1.20710 0.94270 1.00425 0.96910 1.21279 1.00415 0.93713 0.96689 0.88753 0.95186 0.96956 0.92610 0.93788 0.89620 0.93411 0.75999 0.85045 0.83089 0.74817 0.88682 0.90325 0.90302 0.84583 0.83022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.48 8.97 37.16 0.33 -3.15 16 2 C 0.27 6.94 2.64 -69.08 -0.18 6.76 16 3 H 0.07 1.93 6.90 -51.93 -0.36 1.57 16 4 C -0.53 -14.20 7.99 -34.44 -0.28 -14.47 16 5 H 0.06 1.56 7.33 -52.48 -0.38 1.17 16 6 C 0.06 1.77 5.30 -17.82 -0.09 1.67 16 7 N -0.89 -25.06 11.32 55.43 0.63 -24.44 16 8 Si 0.90 21.12 29.54 -169.99 -5.02 16.10 16 9 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 10 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 12 N -0.60 -12.84 2.75 -181.00 -0.50 -13.34 16 13 C 0.08 1.35 9.16 59.85 0.55 1.90 16 14 C 0.70 14.74 8.12 -86.91 -0.71 14.03 16 15 O -0.58 -14.36 13.11 5.28 0.07 -14.29 16 16 N -0.69 -11.37 5.18 -14.18 -0.07 -11.44 16 17 C 0.17 2.77 6.30 -83.62 -0.53 2.24 16 18 C -0.13 -1.83 9.96 -39.42 -0.39 -2.22 16 19 C -0.12 -1.74 9.39 -39.42 -0.37 -2.11 16 20 C 0.14 2.16 6.69 -83.57 -0.56 1.60 16 21 N -0.39 -5.26 3.80 -14.07 -0.05 -5.31 16 22 N -0.28 -2.99 11.84 29.87 0.35 -2.63 16 23 C 0.26 1.60 12.61 -89.09 -1.12 0.48 16 24 N -0.56 -4.43 3.14 -130.10 -0.41 -4.84 16 25 C 0.10 0.35 11.08 59.85 0.66 1.01 16 26 C 0.64 8.30 8.48 -86.73 -0.74 7.57 16 27 O -0.54 -8.30 15.13 5.10 0.08 -8.22 16 28 C -0.10 -1.55 9.66 -39.42 -0.38 -1.93 16 29 C -0.10 -1.68 8.69 -39.42 -0.34 -2.02 16 30 H 0.09 2.46 6.07 -51.93 -0.32 2.15 16 31 H 0.03 0.65 7.67 -51.93 -0.40 0.25 16 32 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 34 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.09 1.50 7.02 -51.93 -0.36 1.13 16 36 H 0.05 0.62 6.44 -51.93 -0.33 0.29 16 37 H 0.40 5.24 6.62 -40.82 -0.27 4.97 16 38 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16 39 H 0.15 2.23 5.50 -52.49 -0.29 1.94 16 40 H 0.24 0.03 8.06 -52.48 -0.42 -0.39 16 41 H 0.09 -0.04 8.07 -51.93 -0.42 -0.46 16 42 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 43 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 44 H 0.14 1.90 7.71 -52.49 -0.40 1.50 16 45 H 0.15 2.83 6.22 -52.48 -0.33 2.50 16 LS Contribution 374.70 15.07 5.65 5.65 Total: -1.00 -36.57 374.70 -8.96 -45.53 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: -5.54 Total: 5.89 kcal Atomic # 6 Polarization: 15.50 SS G_CDS: -4.14 Total: 11.35 kcal Atomic # 7 Polarization: -61.96 SS G_CDS: -0.05 Total: -62.01 kcal Atomic # 8 Polarization: -22.66 SS G_CDS: 0.15 Total: -22.51 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -36.57 -8.96 -45.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092837834.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.276 kcal (2) G-P(sol) polarization free energy of solvation -36.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.534 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds