Wall clock time and date at job start Tue Mar 31 2020 07:17:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42900 * 113.99896 * 2 1 4 4 C 1.52997 * 109.47241 * 180.02562 * 3 2 1 5 5 N 1.46495 * 109.47578 * 179.97438 * 4 3 2 6 6 C 1.36960 * 125.07153 * 265.02493 * 5 4 3 7 7 C 1.34205 * 109.92044 * 179.97438 * 6 5 4 8 8 C 1.46555 * 107.00872 * 0.02562 * 7 6 5 9 9 C 1.39670 * 133.91427 * 179.97438 * 8 7 6 10 10 C 1.36516 * 119.86167 * 179.97438 * 9 8 7 11 11 C 1.39419 * 120.45838 * 359.97438 * 10 9 8 12 12 N 1.40030 * 119.74350 * 179.97438 * 11 10 9 13 13 C 1.34773 * 120.00343 * 213.28031 * 12 11 10 14 14 O 1.21590 * 120.00034 * 5.03923 * 13 12 11 15 15 N 1.34777 * 120.00573 * 185.04754 * 13 12 11 16 16 C 1.46497 * 119.99712 * 359.97438 * 15 13 12 17 17 C 1.46501 * 120.00248 * 179.97438 * 15 13 12 18 18 H 1.08993 * 109.47037 * 359.97438 * 17 15 13 19 19 C 1.53000 * 109.47179 * 119.99896 * 17 15 13 20 20 C 1.50698 * 109.46876 * 239.99518 * 17 15 13 21 21 H 1.08001 * 120.00501 * 354.29394 * 20 17 15 22 22 C 1.37884 * 120.00015 * 174.28970 * 20 17 15 23 23 N 1.31510 * 120.00262 * 159.31403 * 22 20 17 24 24 Si 1.86802 * 119.99537 * 339.58430 * 22 20 17 25 25 H 1.48504 * 109.46805 * 179.72371 * 24 22 20 26 26 H 1.48493 * 109.47721 * 299.72495 * 24 22 20 27 27 H 1.48502 * 109.46789 * 59.72987 * 24 22 20 28 28 C 1.38339 * 120.50895 * 0.27713 * 11 10 9 29 29 C 1.37711 * 125.07281 * 84.99399 * 5 4 3 30 30 H 1.09002 * 109.46830 * 59.99903 * 1 2 3 31 31 H 1.08998 * 109.47487 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.47270 * 300.00398 * 1 2 3 33 33 H 1.08997 * 109.47369 * 59.99730 * 3 2 1 34 34 H 1.09001 * 109.46887 * 299.99722 * 3 2 1 35 35 H 1.09005 * 109.47203 * 59.99245 * 4 3 2 36 36 H 1.09002 * 109.46996 * 300.00183 * 4 3 2 37 37 H 1.08001 * 125.04263 * 359.97438 * 6 5 4 38 38 H 1.07993 * 126.49253 * 179.97438 * 7 6 5 39 39 H 1.08008 * 120.06735 * 0.02562 * 9 8 7 40 40 H 1.08003 * 119.77545 * 180.02562 * 10 9 8 41 41 H 0.97005 * 120.00273 * 33.28353 * 12 11 10 42 42 H 1.08999 * 109.47982 * 270.00101 * 16 15 13 43 43 H 1.09005 * 109.47240 * 30.00549 * 16 15 13 44 44 H 1.09001 * 109.46968 * 150.00047 * 16 15 13 45 45 H 1.09003 * 109.46564 * 294.04387 * 19 17 15 46 46 H 1.08994 * 109.47279 * 54.04156 * 19 17 15 47 47 H 1.08995 * 109.47266 * 174.04590 * 19 17 15 48 48 H 0.96998 * 119.99572 * 355.21153 * 23 22 20 49 49 H 1.08002 * 120.13609 * 179.72747 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 4.1313 2.5230 -0.0013 6 6 4.5397 3.2021 -1.1183 7 6 5.0385 4.3982 -0.7695 8 6 4.9427 4.4935 0.6898 9 6 5.2909 5.4741 1.6215 10 6 5.0682 5.2582 2.9510 11 6 4.4943 4.0646 3.3867 12 7 4.2731 3.8587 4.7540 13 6 4.3748 2.6195 5.2741 14 8 4.7477 1.6961 4.5764 15 7 4.0632 2.4037 6.5674 16 6 3.6143 3.5162 7.4082 17 6 4.1733 1.0565 7.1325 18 1 4.5191 0.3668 6.3626 19 6 5.1715 1.0698 8.2918 20 6 2.8245 0.6113 7.6361 21 1 1.9916 1.2988 7.6291 22 6 2.6537 -0.6738 8.1057 23 7 1.6453 -0.9544 8.9018 24 14 3.8592 -2.0145 7.6171 25 1 3.4606 -3.2950 8.2550 26 1 3.8512 -2.1735 6.1407 27 1 5.2241 -1.6410 8.0674 28 6 4.1476 3.0797 2.4793 29 6 4.3638 3.2862 1.1212 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.6886 1.8464 0.8899 34 1 1.6886 1.8463 -0.8900 35 1 3.8567 0.6438 -0.8908 36 1 3.8574 0.6436 0.8891 37 1 4.4707 2.8302 -2.1300 38 1 5.4360 5.1479 -1.4375 39 1 5.7347 6.4016 1.2907 40 1 5.3376 6.0176 3.6702 41 1 4.0465 4.6080 5.3270 42 1 4.4767 3.9837 7.8834 43 1 3.0962 4.2512 6.7921 44 1 2.9359 3.1416 8.1747 45 1 6.1688 1.2888 7.9101 46 1 4.8820 1.8351 9.0119 47 1 5.1751 0.0949 8.7794 48 1 1.0623 -0.2450 9.2145 49 1 3.7074 2.1556 2.8239 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092841273.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:17:34 Heat of formation + Delta-G solvation = 6.343218 kcal Electronic energy + Delta-G solvation = -30569.718669 eV Core-core repulsion = 26498.458430 eV Total energy + Delta-G solvation = -4071.260239 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.35530 -39.96438 -38.16127 -37.27391 -35.52463 -34.23776 -33.12634 -32.45778 -30.67855 -30.07654 -28.57480 -27.66742 -26.29434 -26.24009 -24.78128 -23.60750 -22.90099 -21.76767 -20.77035 -20.15512 -19.13111 -17.91035 -17.52033 -17.06595 -16.84170 -16.35373 -16.23229 -15.75991 -15.46570 -15.09527 -14.95359 -14.30332 -14.14948 -13.93285 -13.65309 -13.37824 -13.30949 -13.20005 -13.02099 -12.77154 -12.63777 -12.38131 -12.02714 -11.82455 -11.79675 -11.67708 -11.66457 -11.51021 -11.36074 -11.29319 -10.96327 -10.49942 -10.05087 -9.96714 -9.92015 -9.77040 -9.46984 -9.16116 -9.09153 -8.34296 -7.94440 -7.79942 -7.30748 -6.50907 -4.14792 1.25132 1.68133 2.55349 2.71481 3.13006 3.40193 3.49813 3.63820 3.64506 3.74514 4.11497 4.39343 4.47305 4.51775 4.75128 4.76403 4.82372 5.01704 5.10981 5.16252 5.17329 5.19200 5.33466 5.38366 5.46621 5.49207 5.52611 5.54908 5.66094 5.70214 5.83629 5.90808 6.08487 6.18268 6.32703 6.40400 6.43787 6.53306 6.58283 6.62247 6.83162 6.85389 6.93668 6.94981 7.00765 7.29450 7.35484 7.41949 7.59011 7.90030 8.30486 8.46964 8.79681 9.10213 9.51329 10.84498 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.009435 B = 0.003563 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2966.805873 B = 7855.559444 C = 9929.671915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.388 6.388 3 C 0.047 3.953 4 C 0.112 3.888 5 N -0.481 5.481 6 C 0.042 3.958 7 C -0.199 4.199 8 C -0.132 4.132 9 C -0.055 4.055 10 C -0.169 4.169 11 C 0.195 3.805 12 N -0.692 5.692 13 C 0.697 3.303 14 O -0.580 6.580 15 N -0.599 5.599 16 C 0.084 3.916 17 C 0.250 3.750 18 H 0.056 0.944 19 C -0.158 4.158 20 C -0.615 4.615 21 H 0.061 0.939 22 C 0.043 3.957 23 N -0.897 5.897 24 Si 1.032 2.968 25 H -0.284 1.284 26 H -0.279 1.279 27 H -0.274 1.274 28 C -0.135 4.135 29 C 0.121 3.879 30 H 0.040 0.960 31 H 0.090 0.910 32 H 0.045 0.955 33 H 0.057 0.943 34 H 0.053 0.947 35 H 0.097 0.903 36 H 0.100 0.900 37 H 0.165 0.835 38 H 0.144 0.856 39 H 0.123 0.877 40 H 0.123 0.877 41 H 0.404 0.596 42 H 0.044 0.956 43 H 0.050 0.950 44 H 0.086 0.914 45 H 0.026 0.974 46 H 0.046 0.954 47 H 0.063 0.937 48 H 0.269 0.731 49 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.985 12.408 -17.540 21.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.306 6.306 3 C -0.031 4.031 4 C -0.010 4.010 5 N -0.166 5.166 6 C -0.081 4.081 7 C -0.224 4.224 8 C -0.137 4.137 9 C -0.075 4.075 10 C -0.190 4.190 11 C 0.097 3.903 12 N -0.341 5.341 13 C 0.399 3.601 14 O -0.458 6.458 15 N -0.333 5.333 16 C -0.060 4.060 17 C 0.148 3.852 18 H 0.074 0.926 19 C -0.216 4.216 20 C -0.653 4.653 21 H 0.080 0.920 22 C -0.164 4.164 23 N -0.529 5.529 24 Si 0.859 3.141 25 H -0.209 1.209 26 H -0.204 1.204 27 H -0.200 1.200 28 C -0.159 4.159 29 C 0.015 3.985 30 H 0.059 0.941 31 H 0.108 0.892 32 H 0.064 0.936 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.116 0.884 36 H 0.118 0.882 37 H 0.182 0.818 38 H 0.162 0.838 39 H 0.141 0.859 40 H 0.141 0.859 41 H 0.240 0.760 42 H 0.063 0.937 43 H 0.068 0.932 44 H 0.104 0.896 45 H 0.045 0.955 46 H 0.065 0.935 47 H 0.082 0.918 48 H 0.079 0.921 49 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 3.480 9.540 -17.787 20.482 hybrid contribution -0.810 2.316 0.270 2.468 sum 2.670 11.857 -17.517 21.320 Atomic orbital electron populations 1.22781 0.80195 1.03160 1.00166 1.87818 1.20387 1.26852 1.95504 1.22828 0.93594 0.85457 1.01203 1.21481 0.91787 0.81991 1.05782 1.43758 1.53166 1.14841 1.04874 1.21753 1.02072 0.93381 0.90940 1.21602 1.09639 0.98157 0.92992 1.19138 1.06165 0.94783 0.93589 1.19935 0.98606 0.97645 0.91264 1.20345 1.04669 0.97891 0.96136 1.17033 0.96709 0.94354 0.82172 1.42908 1.74094 1.09831 1.07281 1.15975 0.78966 0.82353 0.82827 1.90871 1.53565 1.41826 1.59498 1.47286 1.67140 1.11212 1.07639 1.21572 0.99357 0.89024 0.96085 1.19116 0.96339 0.78043 0.91686 0.92612 1.22472 0.97327 1.01967 0.99882 1.22140 0.95252 1.00577 1.47291 0.92047 1.25623 0.99299 0.98697 0.92794 1.70867 1.17246 1.37028 1.27791 0.84228 0.75985 0.76498 0.77364 1.20935 1.20448 1.20027 1.20006 1.05804 1.01660 0.88429 1.18006 1.01200 0.91385 0.87946 0.94098 0.89162 0.93620 0.92461 0.92880 0.88442 0.88193 0.81790 0.83829 0.85879 0.85911 0.75959 0.93702 0.93188 0.89557 0.95504 0.93495 0.91776 0.92149 0.84478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 101.05 1.11 1.44 16 2 O -0.39 -4.96 10.70 -35.23 -0.38 -5.34 16 3 C 0.05 0.55 6.26 37.16 0.23 0.78 16 4 C 0.11 1.32 6.37 -4.05 -0.03 1.30 16 5 N -0.48 -6.18 2.78 -114.41 -0.32 -6.50 16 6 C 0.04 0.44 11.28 -16.68 -0.19 0.26 16 7 C -0.20 -2.21 11.08 -37.65 -0.42 -2.62 16 8 C -0.13 -1.80 6.37 -105.09 -0.67 -2.47 16 9 C -0.06 -0.68 10.04 -39.67 -0.40 -1.08 16 10 C -0.17 -2.20 9.88 -39.76 -0.39 -2.59 16 11 C 0.19 3.12 6.29 -83.63 -0.53 2.60 16 12 N -0.69 -11.28 5.17 -14.20 -0.07 -11.35 16 13 C 0.70 14.54 8.02 -86.92 -0.70 13.85 16 14 O -0.58 -14.16 13.30 5.29 0.07 -14.09 16 15 N -0.60 -12.53 2.75 -181.01 -0.50 -13.03 16 16 C 0.08 1.36 9.03 59.85 0.54 1.90 16 17 C 0.25 6.09 2.23 -69.08 -0.15 5.93 16 18 H 0.06 1.50 5.50 -51.93 -0.29 1.21 16 19 C -0.16 -3.45 8.98 37.16 0.33 -3.12 16 20 C -0.61 -16.83 8.33 -34.44 -0.29 -17.12 16 21 H 0.06 1.78 7.37 -52.49 -0.39 1.40 16 22 C 0.04 1.21 5.25 -17.82 -0.09 1.11 16 23 N -0.90 -26.78 13.70 55.43 0.76 -26.02 16 24 Si 1.03 25.41 26.37 -169.99 -4.48 20.93 16 25 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 26 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 27 H -0.27 -6.24 5.94 56.52 0.34 -5.90 16 28 C -0.14 -2.35 8.58 -39.24 -0.34 -2.69 16 29 C 0.12 1.85 6.81 -84.00 -0.57 1.27 16 30 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.10 0.92 8.12 -51.93 -0.42 0.50 16 36 H 0.10 1.38 8.14 -51.93 -0.42 0.96 16 37 H 0.16 1.12 8.06 -52.49 -0.42 0.70 16 38 H 0.14 1.21 8.06 -52.49 -0.42 0.78 16 39 H 0.12 1.15 8.06 -52.48 -0.42 0.73 16 40 H 0.12 1.27 8.06 -52.48 -0.42 0.84 16 41 H 0.40 5.21 6.62 -40.82 -0.27 4.94 16 42 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 43 H 0.05 0.66 6.44 -51.93 -0.33 0.33 16 44 H 0.09 1.56 6.91 -51.93 -0.36 1.20 16 45 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.05 0.95 7.48 -51.93 -0.39 0.56 16 47 H 0.06 1.45 5.19 -51.93 -0.27 1.18 16 48 H 0.27 7.93 8.73 -40.82 -0.36 7.57 16 49 H 0.14 2.76 6.35 -52.49 -0.33 2.43 16 LS Contribution 396.82 15.07 5.98 5.98 Total: -1.00 -34.38 396.82 -8.82 -43.19 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: -7.34 Total: 7.47 kcal Atomic # 6 Polarization: 1.30 SS G_CDS: -2.54 Total: -1.24 kcal Atomic # 7 Polarization: -56.77 SS G_CDS: -0.13 Total: -56.90 kcal Atomic # 8 Polarization: -19.13 SS G_CDS: -0.31 Total: -19.43 kcal Atomic # 14 Polarization: 25.41 SS G_CDS: -4.48 Total: 20.93 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -34.38 -8.82 -43.19 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092841273.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.537 kcal (2) G-P(sol) polarization free energy of solvation -34.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.193 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds