Wall clock time and date at job start Tue Mar 31 2020 06:47:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.36004 * 117.00526 * 2 1 4 4 C 1.38473 * 119.99844 * 359.97438 * 3 2 1 5 5 C 1.38501 * 120.33118 * 179.97438 * 4 3 2 6 6 C 1.50700 * 119.82397 * 180.02562 * 5 4 3 7 7 C 1.37789 * 120.34680 * 0.02562 * 5 4 3 8 8 C 1.39759 * 119.99996 * 0.02583 * 7 5 4 9 9 C 1.47546 * 120.16662 * 180.02562 * 8 7 5 10 10 O 1.21595 * 119.99897 * 235.02120 * 9 8 7 11 11 N 1.34778 * 120.00257 * 55.29173 * 9 8 7 12 12 C 1.46492 * 119.99991 * 185.28441 * 11 9 8 13 13 C 1.50696 * 109.47434 * 90.00101 * 12 11 9 14 14 H 1.08001 * 120.00342 * 359.97438 * 13 12 11 15 15 C 1.37881 * 120.00444 * 179.97438 * 13 12 11 16 16 N 1.31517 * 119.99708 * 0.02562 * 15 13 12 17 17 Si 1.86793 * 120.00301 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47296 * 359.97438 * 17 15 13 19 19 H 1.48504 * 109.47010 * 120.00064 * 17 15 13 20 20 H 1.48502 * 109.46988 * 240.00091 * 17 15 13 21 21 C 1.46495 * 119.99701 * 5.28118 * 11 9 8 22 22 C 1.50705 * 109.47221 * 94.96768 * 21 11 9 23 23 C 1.34507 * 125.79137 * 89.70767 * 22 21 11 24 24 C 1.41376 * 106.84176 * 179.89272 * 23 22 21 25 25 C 1.34510 * 106.84392 * 0.37680 * 24 23 22 26 26 O 1.34298 * 125.78691 * 270.02533 * 22 21 11 27 27 C 1.39131 * 120.00788 * 180.27060 * 3 2 1 28 28 O 1.35746 * 120.17156 * 0.03017 * 27 3 2 29 29 H 1.08996 * 109.47148 * 179.97438 * 1 2 3 30 30 H 1.08991 * 109.47274 * 300.00089 * 1 2 3 31 31 H 1.09007 * 109.46767 * 60.00305 * 1 2 3 32 32 H 1.08000 * 119.83777 * 359.97438 * 4 3 2 33 33 H 1.09003 * 109.47521 * 269.97909 * 6 5 4 34 34 H 1.09002 * 109.47643 * 29.98067 * 6 5 4 35 35 H 1.09006 * 109.47135 * 149.98020 * 6 5 4 36 36 H 1.07996 * 119.99931 * 180.02562 * 7 5 4 37 37 H 1.09004 * 109.47013 * 210.00051 * 12 11 9 38 38 H 1.09008 * 109.47226 * 329.99736 * 12 11 9 39 39 H 0.96997 * 120.00119 * 180.02562 * 16 15 13 40 40 H 1.09001 * 109.47441 * 214.96417 * 21 11 9 41 41 H 1.09003 * 109.47596 * 334.96552 * 21 11 9 42 42 H 1.08005 * 126.58000 * 0.03843 * 23 22 21 43 43 H 1.08008 * 126.57756 * 180.16735 * 24 23 22 44 44 H 1.08000 * 125.79430 * 179.75361 * 25 24 23 45 45 H 0.96703 * 113.99705 * 270.31120 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2924 2.3731 -0.0005 5 6 1.9141 3.6108 0.0000 6 6 1.0823 4.8674 0.0000 7 6 3.2892 3.6991 0.0005 8 6 4.0641 2.5360 0.0000 9 6 5.5368 2.6262 0.0011 10 8 6.1812 2.0617 -0.8618 11 7 6.1681 3.3299 0.9617 12 6 7.6197 3.5167 0.8986 13 6 7.9316 4.7725 0.1262 14 1 7.1288 5.3715 -0.2777 15 6 9.2418 5.1570 -0.0649 16 7 10.2195 4.4274 0.4264 17 14 9.6283 6.7133 -1.0230 18 1 8.3617 7.3481 -1.4679 19 1 10.3768 7.6565 -0.1538 20 1 10.4538 6.3720 -2.2093 21 6 5.4027 3.9080 2.0690 22 6 5.4291 2.9651 3.2443 23 6 6.3494 2.9562 4.2252 24 6 5.9899 1.9178 5.1147 25 6 4.8762 1.3487 4.6198 26 8 4.5410 1.9872 3.4867 27 6 3.4359 1.2846 -0.0057 28 8 4.1787 0.1484 -0.0119 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 0.2141 2.3136 -0.0014 33 1 0.8824 5.1709 -1.0277 34 1 0.1392 4.6789 0.5131 35 1 1.6235 5.6614 0.5145 36 1 3.7681 4.6670 0.0014 37 1 8.0193 3.6030 1.9091 38 1 8.0749 2.6609 0.3999 39 1 11.1413 4.6980 0.2923 40 1 5.8453 4.8613 2.3580 41 1 4.3714 4.0670 1.7538 42 1 7.1985 3.6172 4.3170 43 1 6.5117 1.6336 6.0167 44 1 4.3421 0.5190 5.0588 45 1 4.3936 -0.1857 0.8698 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094074066.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:32 Heat of formation + Delta-G solvation = -61.568632 kcal Electronic energy + Delta-G solvation = -31197.439804 eV Core-core repulsion = 26955.108840 eV Total energy + Delta-G solvation = -4242.330963 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.30354 -40.64802 -39.03162 -37.42086 -36.84098 -35.17200 -32.85275 -32.67834 -31.78080 -30.47719 -30.12935 -27.93115 -27.39810 -26.20781 -25.44800 -23.91599 -22.29624 -21.58273 -21.43284 -20.44489 -19.09771 -18.22962 -17.47886 -17.23265 -16.72183 -16.30357 -16.21951 -16.01007 -15.62390 -15.32362 -15.19201 -14.48881 -14.35013 -14.28877 -13.86741 -13.65802 -13.59949 -13.04525 -12.72121 -12.62683 -12.58114 -12.48021 -12.30522 -12.13905 -12.06467 -11.90066 -11.53938 -11.36313 -11.29286 -10.91383 -10.81417 -10.60577 -10.55934 -10.21025 -9.72386 -9.64601 -9.11956 -8.66581 -8.45726 -8.28952 -8.07478 -7.81680 -6.06671 -4.12095 1.00579 1.29104 1.91413 2.82604 2.98850 3.16360 3.28819 3.32763 3.37355 3.40896 3.70598 3.95402 4.25325 4.42573 4.61841 4.80914 4.87950 4.94371 4.94947 5.02645 5.17806 5.21327 5.26709 5.27133 5.27560 5.33009 5.48373 5.52929 5.53279 5.64911 5.87473 5.90105 6.02968 6.03372 6.20552 6.23484 6.31294 6.43788 6.54997 6.73843 7.00344 7.15802 7.33058 7.43651 7.48110 7.86096 7.89458 8.18547 8.25883 8.83776 8.99054 9.53199 11.01488 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.010230 B = 0.004147 C = 0.003521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2736.281237 B = 6751.016166 C = 7949.802175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.307 6.307 3 C 0.101 3.899 4 C -0.187 4.187 5 C -0.061 4.061 6 C -0.113 4.113 7 C -0.116 4.116 8 C -0.096 4.096 9 C 0.556 3.444 10 O -0.509 6.509 11 N -0.587 5.587 12 C 0.246 3.754 13 C -0.530 4.530 14 H 0.060 0.940 15 C 0.063 3.937 16 N -0.892 5.892 17 Si 0.898 3.102 18 H -0.273 1.273 19 H -0.283 1.283 20 H -0.283 1.283 21 C 0.179 3.821 22 C -0.023 4.023 23 C -0.194 4.194 24 C -0.212 4.212 25 C -0.053 4.053 26 O -0.176 6.176 27 C 0.118 3.882 28 O -0.471 6.471 29 H 0.099 0.901 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.132 0.868 33 H 0.073 0.927 34 H 0.065 0.935 35 H 0.072 0.928 36 H 0.137 0.863 37 H 0.036 0.964 38 H 0.047 0.953 39 H 0.263 0.737 40 H 0.115 0.885 41 H 0.093 0.907 42 H 0.150 0.850 43 H 0.144 0.856 44 H 0.197 0.803 45 H 0.384 0.616 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.047 -3.410 7.753 22.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.220 6.220 3 C 0.055 3.945 4 C -0.206 4.206 5 C -0.061 4.061 6 C -0.169 4.169 7 C -0.135 4.135 8 C -0.100 4.100 9 C 0.342 3.658 10 O -0.384 6.384 11 N -0.318 5.318 12 C 0.127 3.873 13 C -0.569 4.569 14 H 0.078 0.922 15 C -0.139 4.139 16 N -0.530 5.530 17 Si 0.726 3.274 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.209 1.209 21 C 0.055 3.945 22 C -0.074 4.074 23 C -0.214 4.214 24 C -0.231 4.231 25 C -0.121 4.121 26 O -0.072 6.072 27 C 0.071 3.929 28 O -0.280 6.280 29 H 0.117 0.883 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.150 0.850 33 H 0.091 0.909 34 H 0.084 0.916 35 H 0.091 0.909 36 H 0.155 0.845 37 H 0.054 0.946 38 H 0.065 0.935 39 H 0.073 0.927 40 H 0.133 0.867 41 H 0.111 0.889 42 H 0.168 0.832 43 H 0.162 0.838 44 H 0.213 0.787 45 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -20.648 -3.927 6.477 21.994 hybrid contribution 0.348 0.782 0.332 0.918 sum -20.300 -3.145 6.810 21.641 Atomic orbital electron populations 1.23061 0.78750 1.03862 1.01213 1.86162 1.20948 1.26099 1.88798 1.19222 0.91272 0.84904 0.99055 1.21025 0.99774 0.91293 1.08489 1.19564 0.93457 0.94693 0.98412 1.20795 0.99006 0.94483 1.02637 1.21007 0.92774 0.97694 1.01980 1.20386 0.95085 0.92759 1.01752 1.17894 0.85800 0.79432 0.82668 1.90812 1.66564 1.44151 1.36904 1.48224 1.10740 1.51619 1.21254 1.19371 0.72043 0.97951 0.97896 1.21458 0.92284 1.08189 1.34959 0.92211 1.24927 0.96050 0.97304 0.95662 1.69946 0.99494 1.38305 1.45285 0.86446 0.78414 0.82787 0.79799 1.19726 1.20953 1.20869 1.20133 0.98707 0.93019 0.82653 1.23228 0.91401 0.93244 0.99554 1.21717 1.01494 1.02167 0.95980 1.21819 0.98981 0.99656 1.02643 1.23923 0.99631 1.00592 0.87955 1.84013 1.46934 1.38592 1.37660 1.17556 0.85905 0.85850 1.03576 1.84886 1.71652 1.38671 1.32740 0.88282 0.92730 0.92706 0.85049 0.90852 0.91557 0.90947 0.84480 0.94586 0.93542 0.92707 0.86744 0.88858 0.83182 0.83795 0.78650 0.75999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.20 16 2 O -0.31 -4.02 10.28 -34.30 -0.35 -4.38 16 3 C 0.10 1.46 6.69 -39.16 -0.26 1.19 16 4 C -0.19 -2.21 8.68 -39.40 -0.34 -2.55 16 5 C -0.06 -0.73 5.87 -104.69 -0.61 -1.35 16 6 C -0.11 -0.96 10.00 36.01 0.36 -0.60 16 7 C -0.12 -1.71 7.12 -39.18 -0.28 -1.99 16 8 C -0.10 -1.73 4.91 -104.87 -0.51 -2.25 16 9 C 0.56 12.42 6.78 -12.46 -0.08 12.33 16 10 O -0.51 -13.78 16.33 2.74 0.04 -13.74 16 11 N -0.59 -12.55 2.44 -177.66 -0.43 -12.98 16 12 C 0.25 6.36 5.22 -5.20 -0.03 6.33 16 13 C -0.53 -14.64 9.39 -34.44 -0.32 -14.96 16 14 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 15 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 16 N -0.89 -26.17 13.29 55.43 0.74 -25.43 16 17 Si 0.90 21.49 29.54 -169.99 -5.02 16.47 16 18 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 19 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 20 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 21 C 0.18 3.01 5.76 -5.19 -0.03 2.98 16 22 C -0.02 -0.37 6.90 -35.62 -0.25 -0.62 16 23 C -0.19 -3.07 10.81 -39.71 -0.43 -3.50 16 24 C -0.21 -2.86 10.91 -39.71 -0.43 -3.29 16 25 C -0.05 -0.67 12.09 29.41 0.36 -0.31 16 26 O -0.18 -2.68 10.65 5.71 0.06 -2.62 16 27 C 0.12 2.04 6.72 -38.58 -0.26 1.78 16 28 O -0.47 -8.49 12.50 -38.72 -0.48 -8.98 16 29 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.05 0.36 7.66 -51.93 -0.40 -0.04 16 31 H 0.05 0.38 7.66 -51.93 -0.40 -0.01 16 32 H 0.13 1.14 6.27 -52.49 -0.33 0.82 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.45 8.08 -51.93 -0.42 0.03 16 35 H 0.07 0.57 8.08 -51.93 -0.42 0.15 16 36 H 0.14 1.92 7.58 -52.49 -0.40 1.52 16 37 H 0.04 0.94 8.07 -51.93 -0.42 0.52 16 38 H 0.05 1.38 7.35 -51.92 -0.38 1.00 16 39 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 40 H 0.11 1.82 8.11 -51.93 -0.42 1.40 16 41 H 0.09 1.37 4.42 -51.93 -0.23 1.14 16 42 H 0.15 2.37 8.06 -52.48 -0.42 1.94 16 43 H 0.14 1.59 8.06 -52.48 -0.42 1.17 16 44 H 0.20 1.64 8.06 -52.49 -0.42 1.21 16 45 H 0.38 5.46 9.06 45.56 0.41 5.88 16 LS Contribution 388.40 15.07 5.85 5.85 Total: -1.00 -36.27 388.40 -6.89 -43.16 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -5.06 Total: 6.57 kcal Atomic # 6 Polarization: -1.70 SS G_CDS: -2.23 Total: -3.93 kcal Atomic # 7 Polarization: -38.72 SS G_CDS: 0.30 Total: -38.42 kcal Atomic # 8 Polarization: -28.98 SS G_CDS: -0.73 Total: -29.71 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -36.27 -6.89 -43.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094074066.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.406 kcal (2) G-P(sol) polarization free energy of solvation -36.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds