Wall clock time and date at job start Tue Mar 31 2020 05:50:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53000 * 115.51570 * 2 1 4 4 C 1.53001 * 117.43946 * 214.65511 * 2 1 3 5 5 H 1.08998 * 119.53517 * 140.58459 * 4 2 1 6 6 C 1.54392 * 118.12494 * 343.89281 * 4 2 1 7 7 N 1.48146 * 104.61415 * 272.81042 * 6 4 2 8 8 C 1.34782 * 127.83136 * 219.60130 * 7 6 4 9 9 O 1.21587 * 120.00299 * 0.02562 * 8 7 6 10 10 N 1.34784 * 119.99622 * 180.02562 * 8 7 6 11 11 C 1.46488 * 119.99888 * 180.02562 * 10 8 7 12 12 C 1.52999 * 109.47614 * 180.02562 * 11 10 8 13 13 O 1.42904 * 109.46939 * 64.99151 * 12 11 10 14 14 C 1.35674 * 117.00207 * 180.02562 * 13 12 11 15 15 C 1.39318 * 119.81160 * 359.73296 * 14 13 12 16 16 C 1.36441 * 120.17923 * 179.76182 * 15 14 13 17 17 C 1.40833 * 119.81369 * 0.50852 * 16 15 14 18 18 C 1.41207 * 120.18107 * 179.76879 * 17 16 15 19 19 H 1.08003 * 119.99997 * 208.31740 * 18 17 16 20 20 C 1.39895 * 120.00132 * 28.31554 * 18 17 16 21 21 N 1.30881 * 119.99856 * 14.57219 * 20 18 17 22 22 Si 1.86801 * 119.99926 * 194.56776 * 20 18 17 23 23 H 1.48493 * 109.47299 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.46877 * 120.00586 * 22 20 18 25 25 H 1.48500 * 109.46950 * 240.00166 * 22 20 18 26 26 C 1.40835 * 119.63993 * 359.74047 * 17 16 15 27 27 C 1.36440 * 119.81309 * 0.02562 * 26 17 16 28 28 C 1.48142 * 104.32855 * 39.58690 * 7 6 4 29 29 C 1.53004 * 117.44051 * 145.41848 * 2 1 3 30 30 H 1.09000 * 119.53321 * 219.41752 * 29 2 1 31 31 H 1.09000 * 109.46893 * 271.96486 * 1 2 3 32 32 H 1.09001 * 109.46656 * 31.96107 * 1 2 3 33 33 H 1.08998 * 109.47223 * 151.96532 * 1 2 3 34 34 H 1.09004 * 109.46933 * 205.41704 * 3 2 1 35 35 H 1.08997 * 109.47250 * 325.41681 * 3 2 1 36 36 H 1.09004 * 109.46901 * 85.41583 * 3 2 1 37 37 H 1.09005 * 110.40318 * 31.59172 * 6 4 2 38 38 H 1.08996 * 110.40359 * 154.02339 * 6 4 2 39 39 H 0.97003 * 119.99550 * 0.02562 * 10 8 7 40 40 H 1.09005 * 109.47205 * 300.00094 * 11 10 8 41 41 H 1.09006 * 109.47611 * 59.99855 * 11 10 8 42 42 H 1.08993 * 109.47764 * 184.99733 * 12 11 10 43 43 H 1.09003 * 109.46800 * 305.00357 * 12 11 10 44 44 H 1.07996 * 119.91187 * 359.97438 * 15 14 13 45 45 H 1.08005 * 120.09202 * 180.25274 * 16 15 14 46 46 H 0.96998 * 120.00181 * 179.97438 * 21 20 18 47 47 H 1.08000 * 120.09487 * 179.97438 * 26 17 16 48 48 H 1.08000 * 119.90895 * 180.02562 * 27 26 17 49 49 H 1.08996 * 110.40647 * 201.63305 * 28 7 6 50 50 H 1.08998 * 110.41015 * 79.19498 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1891 1.3808 0.0000 4 6 2.2351 -1.1170 -0.7721 5 1 3.1330 -0.8891 -1.3466 6 6 1.4095 -2.3590 -1.1715 7 7 1.5054 -3.2634 -0.0020 8 6 1.6478 -4.6036 -0.0029 9 8 1.7126 -5.2074 -1.0563 10 7 1.7183 -5.2746 1.1639 11 6 1.8736 -6.7312 1.1630 12 6 1.9259 -7.2396 2.6051 13 8 0.6709 -6.9935 3.2427 14 6 0.5492 -7.3865 4.5355 15 6 1.6215 -8.0043 5.1755 16 6 1.5090 -8.3982 6.4770 17 6 0.3011 -8.1884 7.1701 18 6 0.1745 -8.5974 8.5157 19 1 -0.7939 -8.8701 8.9084 20 6 1.3035 -8.6495 9.3401 21 7 2.4118 -8.0599 8.9700 22 14 1.2292 -9.5605 10.9693 23 1 -0.1275 -10.1353 11.1535 24 1 2.2349 -10.6530 10.9718 25 1 1.5210 -8.6166 12.0779 26 6 -0.7797 -7.5679 6.5141 27 6 -0.6492 -7.1756 5.2138 28 6 1.4095 -2.3604 1.1685 29 6 2.2352 -1.1180 0.7707 30 1 3.1330 -0.8908 1.3455 31 1 -0.3633 0.0352 1.0271 32 1 -0.3633 0.8719 -0.5440 33 1 -0.3633 -0.9071 -0.4830 34 1 3.1833 1.3088 -0.4411 35 1 1.5821 2.0731 -0.5833 36 1 2.2715 1.7440 1.0244 37 1 0.3710 -2.0824 -1.3540 38 1 1.8385 -2.8326 -2.0545 39 1 1.6662 -4.7928 2.0043 40 1 1.0276 -7.1865 0.6481 41 1 2.7976 -6.9978 0.6497 42 1 2.1301 -8.3102 2.6059 43 1 2.7162 -6.7185 3.1456 44 1 2.5454 -8.1687 4.6411 45 1 2.3425 -8.8733 6.9730 46 1 3.1946 -8.0956 9.5418 47 1 -1.7095 -7.4038 7.0385 48 1 -1.4768 -6.6993 4.7094 49 1 1.8385 -2.8352 2.0509 50 1 0.3711 -2.0841 1.3514 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095404645.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:08 Heat of formation + Delta-G solvation = -10.798990 kcal Electronic energy + Delta-G solvation = -29115.702240 eV Core-core repulsion = 25109.124570 eV Total energy + Delta-G solvation = -4006.577670 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.04413 -39.32893 -38.71985 -36.60546 -34.72945 -34.67910 -33.30202 -30.47765 -29.72017 -29.45429 -28.92403 -28.37647 -28.06450 -25.09945 -24.70790 -22.86714 -21.06869 -20.63321 -20.34534 -20.27629 -18.97151 -18.20447 -17.41184 -17.12989 -16.36641 -16.13772 -15.62212 -15.28013 -15.16905 -14.65201 -14.57846 -14.54509 -14.00043 -13.77322 -13.70908 -13.34149 -13.02895 -12.76053 -12.66080 -12.60838 -12.36014 -12.33859 -12.20953 -12.03728 -11.91287 -11.73542 -11.53737 -11.47054 -11.26163 -11.06899 -11.01032 -10.66339 -10.49114 -10.04803 -9.96413 -9.91497 -9.79832 -9.41692 -9.19759 -9.09437 -8.68586 -7.71114 -7.02802 -6.74085 -4.30432 2.44637 2.72240 2.91099 3.05480 3.07099 3.12343 3.13214 3.16191 3.84457 3.93699 4.00257 4.08284 4.20197 4.37101 4.59932 4.63909 4.72054 4.74259 4.99835 5.07340 5.20201 5.24954 5.26696 5.32097 5.40325 5.50907 5.55270 5.57001 5.59283 5.62022 5.65280 5.67101 5.74843 5.78086 5.87019 5.96524 5.99358 6.05649 6.22165 6.46993 6.65659 6.83787 6.94752 7.03390 7.23812 7.34915 7.51333 7.84029 7.89741 7.96502 8.10100 8.38523 8.53659 8.60489 8.87241 8.94212 10.21853 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.015523 B = 0.001930 C = 0.001812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.349488 B =14506.022818 C =15447.816464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.087 4.087 3 C -0.115 4.115 4 C -0.170 4.170 5 H 0.120 0.880 6 C 0.147 3.853 7 N -0.641 5.641 8 C 0.729 3.271 9 O -0.594 6.594 10 N -0.735 5.735 11 C 0.144 3.856 12 C 0.054 3.946 13 O -0.327 6.327 14 C -0.007 4.007 15 C -0.175 4.175 16 C -0.128 4.128 17 C 0.088 3.912 18 C -0.464 4.464 19 H 0.077 0.923 20 C 0.073 3.927 21 N -0.805 5.805 22 Si 0.908 3.092 23 H -0.261 1.261 24 H -0.273 1.273 25 H -0.275 1.275 26 C -0.193 4.193 27 C -0.114 4.114 28 C 0.127 3.873 29 C -0.169 4.169 30 H 0.121 0.879 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.058 0.942 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.076 0.924 38 H 0.087 0.913 39 H 0.401 0.599 40 H 0.075 0.925 41 H 0.081 0.919 42 H 0.071 0.929 43 H 0.058 0.942 44 H 0.095 0.905 45 H 0.119 0.881 46 H 0.278 0.722 47 H 0.100 0.900 48 H 0.096 0.904 49 H 0.081 0.919 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.782 14.895 -14.879 21.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.087 4.087 3 C -0.172 4.172 4 C -0.189 4.189 5 H 0.138 0.862 6 C 0.025 3.975 7 N -0.380 5.380 8 C 0.431 3.569 9 O -0.473 6.473 10 N -0.391 5.391 11 C 0.020 3.980 12 C -0.022 4.022 13 O -0.243 6.243 14 C -0.050 4.050 15 C -0.194 4.194 16 C -0.148 4.148 17 C 0.086 3.914 18 C -0.495 4.495 19 H 0.095 0.905 20 C -0.143 4.143 21 N -0.432 5.432 22 Si 0.733 3.267 23 H -0.185 1.185 24 H -0.198 1.198 25 H -0.201 1.201 26 C -0.212 4.212 27 C -0.133 4.133 28 C 0.004 3.996 29 C -0.188 4.188 30 H 0.139 0.861 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.077 0.923 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.094 0.906 38 H 0.105 0.895 39 H 0.236 0.764 40 H 0.093 0.907 41 H 0.099 0.901 42 H 0.089 0.911 43 H 0.076 0.924 44 H 0.113 0.887 45 H 0.137 0.863 46 H 0.089 0.911 47 H 0.118 0.882 48 H 0.114 0.886 49 H 0.099 0.901 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 1.935 14.380 -15.667 21.354 hybrid contribution 0.517 -0.214 1.425 1.531 sum 2.452 14.167 -14.242 20.237 Atomic orbital electron populations 1.21540 0.92079 1.02621 1.02446 1.21641 0.95089 0.90882 1.01114 1.21341 1.00087 0.93450 1.02311 1.23946 1.02494 0.97603 0.94854 0.86219 1.21618 0.99538 0.87159 0.89219 1.48291 1.77604 1.04006 1.08073 1.15303 0.77599 0.79596 0.84366 1.90914 1.59042 1.66672 1.30636 1.45087 1.78787 1.08067 1.07183 1.21299 1.02646 0.78612 0.95461 1.22730 0.87157 1.00674 0.91664 1.85840 1.33602 1.80048 1.24830 1.18555 0.96050 1.07471 0.82966 1.20620 0.96688 1.05076 0.97033 1.20917 0.99540 1.02332 0.91971 1.17613 0.91025 0.89647 0.93160 1.19487 0.94806 1.40196 0.94969 0.90489 1.25861 0.94803 0.93481 1.00107 1.69822 1.02561 1.33203 1.37605 0.86270 0.79511 0.79813 0.81154 1.18491 1.19845 1.20092 1.20646 1.00128 1.06051 0.94413 1.19615 0.94629 1.04273 0.94758 1.21781 1.00027 0.88615 0.89139 1.23791 1.02571 0.97584 0.94852 0.86123 0.91658 0.91831 0.91559 0.92296 0.91694 0.91719 0.90575 0.89453 0.76378 0.90665 0.90086 0.91131 0.92367 0.88708 0.86296 0.91102 0.88179 0.88552 0.90092 0.90400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.81 8.47 37.16 0.31 -0.50 16 2 C -0.09 -0.57 2.67 -154.50 -0.41 -0.98 16 3 C -0.11 -0.61 9.84 37.16 0.37 -0.24 16 4 C -0.17 -1.31 6.71 -89.22 -0.60 -1.91 16 5 H 0.12 0.85 8.13 -51.93 -0.42 0.43 16 6 C 0.15 1.43 6.54 -2.41 -0.02 1.41 16 7 N -0.64 -7.45 3.32 -175.02 -0.58 -8.03 16 8 C 0.73 10.73 8.57 -86.91 -0.74 9.99 16 9 O -0.59 -10.76 16.61 5.29 0.09 -10.67 16 10 N -0.74 -9.95 5.48 -65.23 -0.36 -10.30 16 11 C 0.14 1.94 6.06 -4.05 -0.02 1.92 16 12 C 0.05 0.80 4.86 37.16 0.18 0.99 16 13 O -0.33 -6.18 10.07 -18.73 -0.19 -6.37 16 14 C -0.01 -0.16 6.71 -38.78 -0.26 -0.42 16 15 C -0.18 -3.94 8.96 -39.83 -0.36 -4.30 16 16 C -0.13 -3.24 8.61 -39.25 -0.34 -3.57 16 17 C 0.09 2.29 5.54 -106.81 -0.59 1.70 16 18 C -0.46 -12.13 9.04 -37.83 -0.34 -12.47 16 19 H 0.08 1.94 7.89 -52.48 -0.41 1.53 16 20 C 0.07 1.82 5.18 -17.34 -0.09 1.73 16 21 N -0.81 -20.57 11.02 55.55 0.61 -19.96 16 22 Si 0.91 18.53 29.58 -169.99 -5.03 13.50 16 23 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 24 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 25 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 26 C -0.19 -4.63 9.74 -39.25 -0.38 -5.02 16 27 C -0.11 -2.56 9.92 -39.83 -0.40 -2.96 16 28 C 0.13 1.16 6.44 -2.41 -0.02 1.15 16 29 C -0.17 -1.31 6.82 -89.22 -0.61 -1.92 16 30 H 0.12 0.88 8.14 -51.93 -0.42 0.45 16 31 H 0.06 0.41 7.99 -51.93 -0.41 -0.01 16 32 H 0.06 0.34 7.89 -51.93 -0.41 -0.07 16 33 H 0.07 0.45 5.22 -51.93 -0.27 0.18 16 34 H 0.06 0.30 7.96 -51.93 -0.41 -0.12 16 35 H 0.06 0.30 7.90 -51.93 -0.41 -0.11 16 36 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.08 0.67 5.81 -51.93 -0.30 0.37 16 38 H 0.09 0.93 7.88 -51.93 -0.41 0.52 16 39 H 0.40 5.05 6.87 -40.82 -0.28 4.77 16 40 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 42 H 0.07 1.00 7.63 -51.93 -0.40 0.60 16 43 H 0.06 0.84 7.66 -51.93 -0.40 0.44 16 44 H 0.09 1.87 6.27 -52.49 -0.33 1.55 16 45 H 0.12 3.10 6.32 -52.48 -0.33 2.77 16 46 H 0.28 6.47 8.30 -40.82 -0.34 6.13 16 47 H 0.10 2.24 8.06 -52.49 -0.42 1.82 16 48 H 0.10 1.96 8.06 -52.49 -0.42 1.53 16 49 H 0.08 0.72 6.87 -51.93 -0.36 0.36 16 50 H 0.08 0.67 6.84 -51.93 -0.36 0.32 16 LS Contribution 400.20 15.07 6.03 6.03 Total: -1.00 -30.37 400.20 -11.32 -41.70 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: -7.58 Total: 9.50 kcal Atomic # 6 Polarization: -11.09 SS G_CDS: -4.32 Total: -15.40 kcal Atomic # 7 Polarization: -37.97 SS G_CDS: -0.33 Total: -38.29 kcal Atomic # 8 Polarization: -16.93 SS G_CDS: -0.10 Total: -17.04 kcal Atomic # 14 Polarization: 18.53 SS G_CDS: -5.03 Total: 13.50 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -30.37 -11.32 -41.70 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095404645.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.899 kcal (2) G-P(sol) polarization free energy of solvation -30.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds