Wall clock time and date at job start Tue Mar 31 2020 06:54:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.53004 * 109.46948 * 298.30363 * 3 2 1 5 5 N 1.46900 * 109.46862 * 184.33050 * 4 3 2 6 6 C 1.46901 * 110.99915 * 199.88304 * 5 4 3 7 7 C 1.50694 * 109.46968 * 66.04835 * 6 5 4 8 8 H 1.07995 * 120.00695 * 0.02562 * 7 6 5 9 9 C 1.37884 * 119.99857 * 179.97438 * 7 6 5 10 10 N 1.31513 * 119.99959 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 120.00051 * 179.97438 * 9 7 6 12 12 H 1.48494 * 109.47097 * 60.00232 * 11 9 7 13 13 H 1.48507 * 109.46956 * 180.02562 * 11 9 7 14 14 H 1.48498 * 109.47171 * 300.00235 * 11 9 7 15 15 C 1.46899 * 111.00135 * 75.92571 * 5 4 3 16 16 C 1.50699 * 109.47492 * 199.93136 * 15 5 4 17 17 O 1.21299 * 119.99735 * 5.50521 * 16 15 5 18 18 N 1.34776 * 119.99991 * 185.50163 * 16 15 5 19 19 C 1.40099 * 119.99803 * 185.25535 * 18 16 15 20 20 C 1.38848 * 120.02192 * 324.36319 * 19 18 16 21 21 C 1.38127 * 120.04181 * 180.09383 * 20 19 18 22 22 C 1.38711 * 120.15862 * 359.94934 * 21 20 19 23 23 C 1.38991 * 119.93545 * 359.95422 * 22 21 20 24 24 C 1.38646 * 119.88395 * 0.12052 * 23 22 21 25 25 O 1.36118 * 120.78547 * 180.39553 * 23 22 21 26 26 C 1.43171 * 116.70133 * 342.55721 * 25 23 22 27 27 C 1.53469 * 108.23579 * 46.31860 * 26 25 23 28 28 O 1.36205 * 119.32224 * 179.80315 * 22 21 20 29 29 H 1.08998 * 109.46649 * 178.30874 * 3 2 1 30 30 H 1.08998 * 109.47506 * 58.30977 * 3 2 1 31 31 H 1.08997 * 109.46860 * 64.33577 * 4 3 2 32 32 H 1.08995 * 109.47536 * 304.33109 * 4 3 2 33 33 H 1.09000 * 109.46984 * 186.04520 * 6 5 4 34 34 H 1.08999 * 109.46906 * 306.04181 * 6 5 4 35 35 H 0.97000 * 120.00155 * 179.97438 * 10 9 7 36 36 H 1.09010 * 109.46975 * 79.93500 * 15 5 4 37 37 H 1.08994 * 109.47445 * 319.93666 * 15 5 4 38 38 H 0.96993 * 120.00257 * 5.25512 * 18 16 15 39 39 H 1.08000 * 119.97724 * 0.11976 * 20 19 18 40 40 H 1.07997 * 119.92223 * 179.97438 * 21 20 19 41 41 H 1.08006 * 119.99014 * 180.17458 * 24 23 22 42 42 H 1.08994 * 109.71509 * 286.63265 * 26 25 23 43 43 H 1.09003 * 109.70701 * 166.00216 * 26 25 23 44 44 H 1.09004 * 109.70476 * 180.56816 * 27 26 25 45 45 H 1.09005 * 109.74459 * 59.97380 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1183 -0.6831 1.2701 5 7 4.5835 -0.5910 1.3208 6 6 5.1434 -1.6018 2.2279 7 6 4.8899 -2.9767 1.6657 8 1 4.3657 -3.0886 0.7281 9 6 5.3282 -4.0920 2.3477 10 7 5.9670 -3.9558 3.4892 11 14 5.0133 -5.7964 1.6512 12 1 5.6591 -5.9139 0.3192 13 1 5.5795 -6.8182 2.5682 14 1 3.5506 -6.0123 1.5129 15 6 5.0130 0.7595 1.7078 16 6 6.4449 0.9708 1.2883 17 8 7.0169 0.1235 0.6354 18 7 7.0899 2.1011 1.6386 19 6 8.3823 2.3480 1.1573 20 6 9.2736 1.2967 0.9893 21 6 10.5485 1.5398 0.5166 22 6 10.9422 2.8335 0.2076 23 6 10.0517 3.8877 0.3728 24 6 8.7726 3.6433 0.8487 25 8 10.4171 5.1628 0.0673 26 6 11.8208 5.4191 -0.0503 27 6 12.4421 4.3065 -0.9055 28 8 12.2047 3.0543 -0.2534 29 1 2.9708 1.0281 -0.0303 30 1 2.9716 -0.5390 -0.8744 31 1 2.8202 -1.7315 1.2631 32 1 2.6928 -0.1902 2.1442 33 1 6.2170 -1.4433 2.3301 34 1 4.6687 -1.5156 3.2053 35 1 6.2750 -4.7404 3.9693 36 1 4.9310 0.8709 2.7891 37 1 4.3781 1.4972 1.2174 38 1 6.6594 2.7437 2.2238 39 1 8.9697 0.2882 1.2279 40 1 11.2404 0.7207 0.3871 41 1 8.0782 4.4609 0.9751 42 1 12.2783 5.4212 0.9389 43 1 11.9792 6.3843 -0.5313 44 1 13.5150 4.4730 -1.0023 45 1 11.9807 4.3000 -1.8931 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095409694.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:40 Heat of formation + Delta-G solvation = -35.049785 kcal Electronic energy + Delta-G solvation = -29249.293336 eV Core-core repulsion = 25040.405068 eV Total energy + Delta-G solvation = -4208.888269 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.38702 -40.01406 -37.87202 -37.37647 -36.96615 -35.90634 -34.26645 -32.69254 -31.25897 -30.98602 -30.34122 -28.77957 -27.54508 -25.72269 -24.79379 -23.16909 -22.88711 -21.82996 -20.50716 -19.85192 -18.88781 -17.80902 -17.42698 -17.35279 -16.95990 -16.40852 -15.99716 -15.60496 -15.27242 -15.09018 -14.80409 -14.57317 -14.51965 -14.32357 -14.01134 -13.94388 -13.83331 -13.47768 -13.27914 -13.01381 -12.71399 -12.38370 -12.24733 -12.05697 -11.98787 -11.90882 -11.60544 -11.40501 -11.30617 -11.03800 -10.75307 -10.67990 -10.61349 -10.34855 -9.95412 -9.75453 -9.42731 -9.19595 -8.59128 -8.43837 -7.73796 -7.48619 -6.02899 -4.03369 1.18618 1.29197 2.71802 2.88643 2.93670 2.96590 3.01984 3.30840 3.35656 3.39799 3.43215 3.71702 3.98565 4.13006 4.44243 4.49720 4.52907 4.61166 4.86622 4.93734 5.00846 5.14811 5.16282 5.25400 5.29666 5.34291 5.40396 5.44898 5.49458 5.60525 5.64817 5.78774 5.88404 6.07029 6.19031 6.32447 6.42211 6.46415 6.74861 6.86590 7.08905 7.17338 7.30149 7.51616 7.71740 7.75720 7.95882 8.07254 8.40086 8.51339 9.01883 9.60284 11.08166 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.010751 B = 0.002606 C = 0.002195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2603.859907 B =10740.425244 C =12753.187585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C 0.218 3.782 3 C -0.028 4.028 4 C 0.066 3.934 5 N -0.516 5.516 6 C 0.197 3.803 7 C -0.506 4.506 8 H 0.065 0.935 9 C 0.057 3.943 10 N -0.898 5.898 11 Si 0.896 3.104 12 H -0.275 1.275 13 H -0.289 1.289 14 H -0.278 1.278 15 C 0.035 3.965 16 C 0.511 3.489 17 O -0.476 6.476 18 N -0.683 5.683 19 C 0.163 3.837 20 C -0.111 4.111 21 C -0.092 4.092 22 C 0.028 3.972 23 C 0.064 3.936 24 C -0.146 4.146 25 O -0.309 6.309 26 C 0.022 3.978 27 C 0.021 3.979 28 O -0.308 6.308 29 H 0.100 0.900 30 H 0.117 0.883 31 H 0.102 0.898 32 H 0.033 0.967 33 H 0.040 0.960 34 H -0.008 1.008 35 H 0.262 0.738 36 H 0.061 0.939 37 H 0.096 0.904 38 H 0.408 0.592 39 H 0.155 0.845 40 H 0.138 0.862 41 H 0.136 0.864 42 H 0.076 0.924 43 H 0.119 0.881 44 H 0.119 0.881 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.229 20.786 -4.703 23.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.133 5.133 2 C -0.100 4.100 3 C -0.068 4.068 4 C -0.064 4.064 5 N -0.241 5.241 6 C 0.073 3.927 7 C -0.544 4.544 8 H 0.083 0.917 9 C -0.144 4.144 10 N -0.538 5.538 11 Si 0.724 3.276 12 H -0.201 1.201 13 H -0.214 1.214 14 H -0.203 1.203 15 C -0.097 4.097 16 C 0.297 3.703 17 O -0.345 6.345 18 N -0.331 5.331 19 C 0.068 3.932 20 C -0.131 4.131 21 C -0.111 4.111 22 C -0.017 4.017 23 C 0.019 3.981 24 C -0.168 4.168 25 O -0.223 6.223 26 C -0.054 4.054 27 C -0.055 4.055 28 O -0.223 6.223 29 H 0.118 0.882 30 H 0.135 0.865 31 H 0.120 0.880 32 H 0.051 0.949 33 H 0.058 0.942 34 H 0.009 0.991 35 H 0.071 0.929 36 H 0.079 0.921 37 H 0.114 0.886 38 H 0.243 0.757 39 H 0.172 0.828 40 H 0.156 0.844 41 H 0.153 0.847 42 H 0.094 0.906 43 H 0.137 0.863 44 H 0.137 0.863 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 9.174 19.924 -5.535 22.622 hybrid contribution 0.095 -0.200 0.729 0.762 sum 9.270 19.724 -4.806 22.317 Atomic orbital electron populations 1.81174 1.13264 1.09563 1.09296 1.29372 0.95425 0.92539 0.92615 1.19433 0.80377 1.03927 1.03096 1.21931 0.88581 1.02748 0.93108 1.61748 1.06971 1.01024 1.54348 1.19804 0.95592 0.88893 0.88450 1.21037 1.36660 0.89792 1.06917 0.91730 1.24946 0.95228 0.99305 0.94932 1.69933 1.38723 1.30041 1.15057 0.86588 0.78421 0.83610 0.78976 1.20063 1.21443 1.20325 1.21952 0.92374 0.95460 0.99929 1.21019 0.89119 0.80498 0.79646 1.90764 1.67067 1.40897 1.35794 1.43648 1.14421 1.24129 1.50880 1.17320 0.85108 0.92453 0.98280 1.21264 0.90969 1.00673 1.00243 1.20384 0.96337 0.93597 1.00830 1.18868 0.85384 0.93679 1.03764 1.18440 0.94650 0.82923 1.02118 1.19980 0.95244 0.96534 1.04995 1.86284 1.24543 1.25145 1.86363 1.23597 0.80458 1.00000 1.01347 1.23577 1.03120 0.83017 0.95818 1.86327 1.26174 1.37145 1.72678 0.88214 0.86482 0.87967 0.94914 0.94185 0.99068 0.92879 0.92094 0.88635 0.75677 0.82772 0.84425 0.84658 0.90568 0.86283 0.86324 0.90622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -7.41 18.54 42.15 0.78 -6.63 16 2 C 0.22 2.99 15.43 -20.76 -0.32 2.67 16 3 C -0.03 -0.33 5.86 -29.52 -0.17 -0.50 16 4 C 0.07 1.02 4.74 -3.82 -0.02 1.00 16 5 N -0.52 -9.38 3.95 -237.52 -0.94 -10.31 16 6 C 0.20 4.69 4.37 -4.98 -0.02 4.66 16 7 C -0.51 -13.43 8.23 -34.44 -0.28 -13.72 16 8 H 0.06 1.68 7.31 -52.49 -0.38 1.30 16 9 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 10 N -0.90 -25.99 13.29 55.43 0.74 -25.26 16 11 Si 0.90 21.36 29.54 -169.99 -5.02 16.34 16 12 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 13 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 14 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 15 C 0.03 0.48 5.30 -4.98 -0.03 0.45 16 16 C 0.51 7.87 7.23 -10.99 -0.08 7.79 16 17 O -0.48 -9.57 12.98 5.54 0.07 -9.50 16 18 N -0.68 -8.13 5.34 -9.85 -0.05 -8.18 16 19 C 0.16 2.16 6.29 -83.66 -0.53 1.63 16 20 C -0.11 -1.65 8.70 -39.40 -0.34 -2.00 16 21 C -0.09 -1.25 9.95 -39.45 -0.39 -1.65 16 22 C 0.03 0.36 6.50 -39.13 -0.25 0.11 16 23 C 0.06 0.79 6.49 -39.15 -0.25 0.53 16 24 C -0.15 -1.72 9.88 -39.24 -0.39 -2.10 16 25 O -0.31 -3.33 10.42 -32.90 -0.34 -3.67 16 26 C 0.02 0.15 7.26 37.40 0.27 0.42 16 27 C 0.02 0.15 7.26 37.40 0.27 0.42 16 28 O -0.31 -3.58 10.42 -33.18 -0.35 -3.92 16 29 H 0.10 0.91 6.68 -51.93 -0.35 0.56 16 30 H 0.12 1.36 8.14 -51.93 -0.42 0.94 16 31 H 0.10 1.85 6.58 -51.93 -0.34 1.51 16 32 H 0.03 0.47 8.00 -51.93 -0.42 0.05 16 33 H 0.04 1.07 6.91 -51.93 -0.36 0.71 16 34 H -0.01 -0.21 8.12 -51.93 -0.42 -0.63 16 35 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 36 H 0.06 0.78 8.00 -51.92 -0.42 0.37 16 37 H 0.10 0.94 6.46 -51.93 -0.34 0.61 16 38 H 0.41 3.29 8.83 -40.82 -0.36 2.93 16 39 H 0.15 2.66 6.24 -52.49 -0.33 2.33 16 40 H 0.14 1.70 8.06 -52.49 -0.42 1.27 16 41 H 0.14 1.28 8.06 -52.48 -0.42 0.86 16 42 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 43 H 0.12 0.45 8.14 -51.93 -0.42 0.02 16 44 H 0.12 0.50 8.14 -51.93 -0.42 0.07 16 45 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 382.98 15.07 5.77 5.77 Total: -1.00 -35.05 382.98 -7.77 -42.82 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -5.80 Total: 1.32 kcal Atomic # 6 Polarization: 3.85 SS G_CDS: -2.63 Total: 1.22 kcal Atomic # 7 Polarization: -50.90 SS G_CDS: 0.53 Total: -50.37 kcal Atomic # 8 Polarization: -16.48 SS G_CDS: -0.62 Total: -17.09 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -35.05 -7.77 -42.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095409694.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.775 kcal (2) G-P(sol) polarization free energy of solvation -35.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds