Wall clock time and date at job start Tue Mar 31 2020 06:54:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.53004 * 109.46948 * 298.30363 * 3 2 1 5 5 N 1.46900 * 109.46862 * 184.33050 * 4 3 2 6 6 C 1.46901 * 110.99915 * 199.88304 * 5 4 3 7 7 C 1.50694 * 109.46968 * 66.04835 * 6 5 4 8 8 H 1.07995 * 120.00695 * 0.02562 * 7 6 5 9 9 C 1.37884 * 119.99857 * 179.97438 * 7 6 5 10 10 N 1.31513 * 119.99959 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 120.00051 * 179.97438 * 9 7 6 12 12 H 1.48494 * 109.47097 * 60.00232 * 11 9 7 13 13 H 1.48507 * 109.46956 * 180.02562 * 11 9 7 14 14 H 1.48498 * 109.47171 * 300.00235 * 11 9 7 15 15 C 1.46899 * 111.00135 * 75.92571 * 5 4 3 16 16 C 1.50699 * 109.47492 * 199.93136 * 15 5 4 17 17 O 1.21299 * 119.99735 * 5.50521 * 16 15 5 18 18 N 1.34776 * 119.99991 * 185.50163 * 16 15 5 19 19 C 1.40099 * 119.99803 * 185.25535 * 18 16 15 20 20 C 1.38848 * 120.02192 * 324.36319 * 19 18 16 21 21 C 1.38127 * 120.04181 * 180.09383 * 20 19 18 22 22 C 1.38711 * 120.15862 * 359.94934 * 21 20 19 23 23 C 1.38991 * 119.93545 * 359.95422 * 22 21 20 24 24 C 1.38646 * 119.88395 * 0.12052 * 23 22 21 25 25 O 1.36118 * 120.78547 * 180.39553 * 23 22 21 26 26 C 1.43171 * 116.70133 * 342.55721 * 25 23 22 27 27 C 1.53469 * 108.23579 * 46.31860 * 26 25 23 28 28 O 1.36205 * 119.32224 * 179.80315 * 22 21 20 29 29 H 1.08998 * 109.46649 * 178.30874 * 3 2 1 30 30 H 1.08998 * 109.47506 * 58.30977 * 3 2 1 31 31 H 1.08997 * 109.46860 * 64.33577 * 4 3 2 32 32 H 1.08995 * 109.47536 * 304.33109 * 4 3 2 33 33 H 1.09000 * 109.46984 * 186.04520 * 6 5 4 34 34 H 1.08999 * 109.46906 * 306.04181 * 6 5 4 35 35 H 0.97000 * 120.00155 * 179.97438 * 10 9 7 36 36 H 1.09010 * 109.46975 * 79.93500 * 15 5 4 37 37 H 1.08994 * 109.47445 * 319.93666 * 15 5 4 38 38 H 0.96993 * 120.00257 * 5.25512 * 18 16 15 39 39 H 1.08000 * 119.97724 * 0.11976 * 20 19 18 40 40 H 1.07997 * 119.92223 * 179.97438 * 21 20 19 41 41 H 1.08006 * 119.99014 * 180.17458 * 24 23 22 42 42 H 1.08994 * 109.71509 * 286.63265 * 26 25 23 43 43 H 1.09003 * 109.70701 * 166.00216 * 26 25 23 44 44 H 1.09004 * 109.70476 * 180.56816 * 27 26 25 45 45 H 1.09005 * 109.74459 * 59.97380 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1183 -0.6831 1.2701 5 7 4.5835 -0.5910 1.3208 6 6 5.1434 -1.6018 2.2279 7 6 4.8899 -2.9767 1.6657 8 1 4.3657 -3.0886 0.7281 9 6 5.3282 -4.0920 2.3477 10 7 5.9670 -3.9558 3.4892 11 14 5.0133 -5.7964 1.6512 12 1 5.6591 -5.9139 0.3192 13 1 5.5795 -6.8182 2.5682 14 1 3.5506 -6.0123 1.5129 15 6 5.0130 0.7595 1.7078 16 6 6.4449 0.9708 1.2883 17 8 7.0169 0.1235 0.6354 18 7 7.0899 2.1011 1.6386 19 6 8.3823 2.3480 1.1573 20 6 9.2736 1.2967 0.9893 21 6 10.5485 1.5398 0.5166 22 6 10.9422 2.8335 0.2076 23 6 10.0517 3.8877 0.3728 24 6 8.7726 3.6433 0.8487 25 8 10.4171 5.1628 0.0673 26 6 11.8208 5.4191 -0.0503 27 6 12.4421 4.3065 -0.9055 28 8 12.2047 3.0543 -0.2534 29 1 2.9708 1.0281 -0.0303 30 1 2.9716 -0.5390 -0.8744 31 1 2.8202 -1.7315 1.2631 32 1 2.6928 -0.1902 2.1442 33 1 6.2170 -1.4433 2.3301 34 1 4.6687 -1.5156 3.2053 35 1 6.2750 -4.7404 3.9693 36 1 4.9310 0.8709 2.7891 37 1 4.3781 1.4972 1.2174 38 1 6.6594 2.7437 2.2238 39 1 8.9697 0.2882 1.2279 40 1 11.2404 0.7207 0.3871 41 1 8.0782 4.4609 0.9751 42 1 12.2783 5.4212 0.9389 43 1 11.9792 6.3843 -0.5313 44 1 13.5150 4.4730 -1.0023 45 1 11.9807 4.3000 -1.8931 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095409694.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:39 Heat of formation + Delta-G solvation = -60.279208 kcal Electronic energy + Delta-G solvation = -29250.387366 eV Core-core repulsion = 25040.405068 eV Total energy + Delta-G solvation = -4209.982299 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.24772 -41.13100 -39.02917 -38.19190 -38.11875 -37.19552 -35.36944 -34.68769 -32.36461 -31.90459 -31.33005 -30.05306 -28.79003 -27.14376 -25.61284 -24.81752 -23.88946 -22.97040 -21.66377 -21.01121 -19.76087 -18.70787 -18.64841 -18.47080 -18.19083 -17.87330 -16.97477 -16.74123 -16.49403 -16.17094 -15.92943 -15.84511 -15.61423 -15.35001 -15.11131 -15.02216 -14.85824 -14.72823 -14.33586 -14.18102 -14.03726 -13.75752 -13.61248 -13.33480 -13.24829 -12.97698 -12.89641 -12.64977 -12.58002 -12.44345 -12.22135 -11.94691 -11.88078 -11.58061 -11.46978 -11.22345 -10.84974 -10.57032 -10.52977 -9.54587 -8.96796 -8.71781 -8.13685 -6.19859 0.18809 0.28866 1.43484 1.46292 1.52884 1.73297 1.78653 1.88690 1.92340 2.15910 2.43172 2.47164 2.71529 3.00372 3.21039 3.33338 3.64252 3.70207 3.86992 4.00695 4.10195 4.16725 4.20387 4.30141 4.36099 4.40617 4.44939 4.53704 4.56118 4.63292 4.76645 4.78341 4.91523 5.06315 5.09597 5.12057 5.28969 5.34132 5.39872 5.41145 5.71661 5.83280 5.92261 6.12583 6.35555 6.43030 6.48690 6.65879 6.73475 6.95273 7.38543 7.48063 8.97194 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.010751 B = 0.002606 C = 0.002195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2603.859907 B =10740.425244 C =12753.187585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C 0.244 3.756 3 C -0.012 4.012 4 C 0.067 3.933 5 N -0.527 5.527 6 C 0.216 3.784 7 C -0.513 4.513 8 H 0.066 0.934 9 C 0.002 3.998 10 N -0.935 5.935 11 Si 0.957 3.043 12 H -0.273 1.273 13 H -0.288 1.288 14 H -0.266 1.266 15 C 0.034 3.966 16 C 0.508 3.492 17 O -0.533 6.533 18 N -0.663 5.663 19 C 0.154 3.846 20 C -0.133 4.133 21 C -0.106 4.106 22 C 0.025 3.975 23 C 0.063 3.937 24 C -0.136 4.136 25 O -0.316 6.316 26 C 0.016 3.984 27 C 0.012 3.988 28 O -0.326 6.326 29 H 0.141 0.859 30 H 0.124 0.876 31 H 0.069 0.931 32 H 0.048 0.952 33 H 0.004 0.996 34 H -0.030 1.030 35 H 0.261 0.739 36 H 0.076 0.924 37 H 0.149 0.851 38 H 0.429 0.571 39 H 0.120 0.880 40 H 0.137 0.863 41 H 0.165 0.835 42 H 0.081 0.919 43 H 0.157 0.843 44 H 0.153 0.847 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.038 23.848 -5.812 26.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.179 5.179 2 C -0.073 4.073 3 C -0.052 4.052 4 C -0.062 4.062 5 N -0.251 5.251 6 C 0.090 3.910 7 C -0.552 4.552 8 H 0.084 0.916 9 C -0.196 4.196 10 N -0.576 5.576 11 Si 0.783 3.217 12 H -0.198 1.198 13 H -0.213 1.213 14 H -0.191 1.191 15 C -0.097 4.097 16 C 0.296 3.704 17 O -0.406 6.406 18 N -0.312 5.312 19 C 0.058 3.942 20 C -0.154 4.154 21 C -0.125 4.125 22 C -0.020 4.020 23 C 0.018 3.982 24 C -0.156 4.156 25 O -0.231 6.231 26 C -0.059 4.059 27 C -0.063 4.063 28 O -0.241 6.241 29 H 0.158 0.842 30 H 0.142 0.858 31 H 0.088 0.912 32 H 0.066 0.934 33 H 0.022 0.978 34 H -0.012 1.012 35 H 0.070 0.930 36 H 0.094 0.906 37 H 0.166 0.834 38 H 0.268 0.732 39 H 0.138 0.862 40 H 0.155 0.845 41 H 0.182 0.818 42 H 0.100 0.900 43 H 0.175 0.825 44 H 0.170 0.830 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 8.968 23.054 -6.640 25.613 hybrid contribution 0.300 -0.996 1.040 1.471 sum 9.267 22.058 -5.600 24.572 Atomic orbital electron populations 1.81211 1.14706 1.11283 1.10686 1.29544 0.95435 0.91044 0.91248 1.19389 0.78867 1.05879 1.01091 1.21859 0.86912 1.01654 0.95789 1.61479 1.08498 1.02162 1.53000 1.19307 0.93493 0.89761 0.88402 1.21466 1.35614 0.91383 1.06690 0.91597 1.25783 0.95299 1.03181 0.95323 1.70059 1.40214 1.30850 1.16464 0.85619 0.78741 0.79244 0.78125 1.19850 1.21336 1.19138 1.22143 0.92131 0.93979 1.01434 1.21384 0.89732 0.80476 0.78795 1.90759 1.68270 1.42922 1.38669 1.43389 1.13813 1.23578 1.50425 1.17360 0.85197 0.92700 0.98896 1.21053 0.92284 0.99823 1.02210 1.20397 0.96095 0.94525 1.01473 1.18894 0.86194 0.93452 1.03485 1.18576 0.94660 0.83568 1.01439 1.20176 0.95550 0.96309 1.03607 1.86272 1.26954 1.23842 1.85990 1.23969 0.78409 1.01435 1.02039 1.23974 1.05402 0.81402 0.95528 1.86299 1.25303 1.39602 1.72881 0.84170 0.85845 0.91228 0.93377 0.97802 1.01190 0.93047 0.90588 0.83378 0.73196 0.86163 0.84470 0.81779 0.90050 0.82548 0.82961 0.90404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -15.54 18.54 20.01 0.37 -15.17 16 2 C 0.24 6.11 15.43 89.44 1.38 7.49 16 3 C -0.01 -0.25 5.86 28.79 0.17 -0.08 16 4 C 0.07 1.97 4.74 86.30 0.41 2.38 16 5 N -0.53 -18.83 3.95 -905.38 -3.58 -22.41 16 6 C 0.22 10.65 4.37 85.55 0.37 11.02 16 7 C -0.51 -28.03 8.23 25.60 0.21 -27.82 16 8 H 0.07 3.49 7.31 -2.91 -0.02 3.47 16 9 C 0.00 0.10 5.46 84.66 0.46 0.56 16 10 N -0.93 -56.07 13.29 21.45 0.28 -55.79 16 11 Si 0.96 44.69 29.54 68.60 2.03 46.71 16 12 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 13 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 14 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 15 C 0.03 0.87 5.30 85.56 0.45 1.32 16 16 C 0.51 15.49 7.23 87.66 0.63 16.13 16 17 O -0.53 -22.35 12.98 -3.09 -0.04 -22.39 16 18 N -0.66 -15.02 5.34 -303.46 -1.62 -16.64 16 19 C 0.15 4.02 6.29 38.09 0.24 4.26 16 20 C -0.13 -4.22 8.70 22.39 0.19 -4.03 16 21 C -0.11 -3.04 9.95 22.36 0.22 -2.82 16 22 C 0.03 0.65 6.50 22.56 0.15 0.79 16 23 C 0.06 1.47 6.49 22.55 0.15 1.61 16 24 C -0.14 -2.93 9.88 22.49 0.22 -2.71 16 25 O -0.32 -5.94 10.42 -82.66 -0.86 -6.81 16 26 C 0.02 0.17 7.26 72.14 0.52 0.70 16 27 C 0.01 0.14 7.26 72.14 0.52 0.67 16 28 O -0.33 -7.27 10.42 -83.66 -0.87 -8.14 16 29 H 0.14 1.81 6.68 -2.39 -0.02 1.79 16 30 H 0.12 2.51 8.14 -2.39 -0.02 2.49 16 31 H 0.07 2.51 6.58 -2.39 -0.02 2.50 16 32 H 0.05 1.27 8.00 -2.39 -0.02 1.25 16 33 H 0.00 0.22 6.91 -2.39 -0.02 0.20 16 34 H -0.03 -1.54 8.12 -2.39 -0.02 -1.56 16 35 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 36 H 0.08 1.78 8.00 -2.38 -0.02 1.77 16 37 H 0.15 2.19 6.46 -2.39 -0.02 2.18 16 38 H 0.43 5.81 8.83 -92.71 -0.82 4.99 16 39 H 0.12 4.64 6.24 -2.91 -0.02 4.62 16 40 H 0.14 3.73 8.06 -2.91 -0.02 3.71 16 41 H 0.16 2.52 8.06 -2.91 -0.02 2.50 16 42 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 43 H 0.16 0.50 8.14 -2.39 -0.02 0.48 16 44 H 0.15 0.78 8.14 -2.39 -0.02 0.76 16 45 H 0.08 0.93 8.14 -2.38 -0.02 0.91 16 Total: -1.00 -81.99 382.98 2.25 -79.74 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: 0.23 Total: 11.41 kcal Atomic # 6 Polarization: 3.17 SS G_CDS: 6.31 Total: 9.48 kcal Atomic # 7 Polarization: -105.47 SS G_CDS: -4.54 Total: -110.01 kcal Atomic # 8 Polarization: -35.56 SS G_CDS: -1.77 Total: -37.33 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.71 kcal Total: -81.99 2.25 -79.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095409694.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.461 kcal (2) G-P(sol) polarization free energy of solvation -81.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds