Wall clock time and date at job start Tue Mar 31 2020 05:03:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46502 * 120.00374 * 2 1 4 4 C 1.50695 * 109.46878 * 270.00288 * 3 2 1 5 5 H 1.07999 * 120.00355 * 359.97438 * 4 3 2 6 6 C 1.37878 * 119.99801 * 179.97438 * 4 3 2 7 7 N 1.31508 * 120.00172 * 0.02562 * 6 4 3 8 8 Si 1.86803 * 120.00071 * 179.97438 * 6 4 3 9 9 H 1.48498 * 109.47048 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.47073 * 120.00421 * 8 6 4 11 11 H 1.48497 * 109.47607 * 240.00395 * 8 6 4 12 12 C 1.34779 * 119.99808 * 180.02562 * 2 1 3 13 13 O 1.21285 * 119.99877 * 179.97438 * 12 2 1 14 14 C 1.50701 * 120.00083 * 359.97438 * 12 2 1 15 15 N 1.46500 * 109.47117 * 180.02562 * 14 12 2 16 16 C 1.39662 * 120.00149 * 180.02562 * 15 14 12 17 17 C 1.38900 * 120.05678 * 359.97438 * 16 15 14 18 18 C 1.38308 * 119.92263 * 180.02562 * 17 16 15 19 19 F 1.35100 * 119.98259 * 180.02562 * 18 17 16 20 20 C 1.38528 * 120.03402 * 0.02562 * 18 17 16 21 21 C 1.38314 * 120.11121 * 359.97438 * 20 18 17 22 22 Br 1.89099 * 119.96077 * 179.97438 * 21 20 18 23 23 C 1.38225 * 120.08328 * 359.97438 * 21 20 18 24 24 H 1.09007 * 109.46521 * 269.99866 * 1 2 3 25 25 H 1.08994 * 109.47041 * 29.99617 * 1 2 3 26 26 H 1.08994 * 109.47326 * 149.99977 * 1 2 3 27 27 H 1.08999 * 109.46811 * 29.99912 * 3 2 1 28 28 H 1.08995 * 109.47235 * 150.00396 * 3 2 1 29 29 H 0.97005 * 120.00167 * 179.97438 * 7 6 4 30 30 H 1.08998 * 109.46981 * 60.00486 * 14 12 2 31 31 H 1.08997 * 109.46945 * 299.99847 * 14 12 2 32 32 H 0.97006 * 119.99870 * 0.02562 * 15 14 12 33 33 H 1.07998 * 120.03386 * 0.04700 * 17 16 15 34 34 H 1.07998 * 119.94322 * 180.02562 * 20 18 17 35 35 H 1.07997 * 120.02527 * 179.74400 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0981 1.0958 -2.2417 6 6 3.1261 2.8779 -1.6727 7 7 3.5535 3.6179 -0.6732 8 14 3.4380 3.4168 -3.4339 9 1 2.8608 2.4164 -4.3673 10 1 2.8001 4.7372 -3.6679 11 1 4.9006 3.5255 -3.6668 12 6 2.1389 -1.1672 -0.0005 13 8 3.3517 -1.1673 -0.0010 14 6 1.3853 -2.4723 -0.0005 15 7 2.3373 -3.5859 -0.0005 16 6 1.8718 -4.9026 -0.0011 17 6 0.5064 -5.1578 -0.0011 18 6 0.0484 -6.4629 -0.0011 19 9 -1.2793 -6.7124 -0.0016 20 6 0.9505 -7.5142 -0.0005 21 6 2.3104 -7.2617 -0.0005 22 35 3.5380 -8.7001 0.0009 23 6 2.7733 -5.9593 -0.0016 24 1 -0.3632 0.0000 1.0278 25 1 -0.3633 0.8900 -0.5137 26 1 -0.3634 -0.8899 -0.5138 27 1 1.6085 2.0283 0.5138 28 1 3.1500 1.1383 0.5137 29 1 4.0304 4.4439 -0.8505 30 1 0.7584 -2.5299 -0.8903 31 1 0.7591 -2.5302 0.8897 32 1 3.2910 -3.4086 -0.0001 33 1 -0.1967 -4.3380 -0.0014 34 1 0.5913 -8.5327 -0.0009 35 1 3.8353 -5.7632 0.0026 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095410317.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:00 Heat of formation + Delta-G solvation = -46.849808 kcal Electronic energy + Delta-G solvation = -20963.034710 eV Core-core repulsion = 17342.906729 eV Total energy + Delta-G solvation = -3620.127980 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 344.028 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.12926 -39.89878 -38.97672 -35.66820 -34.92835 -32.74396 -32.15937 -30.54235 -29.33841 -28.26323 -26.76018 -25.62743 -23.11492 -22.77662 -21.70897 -19.03151 -18.12372 -17.00684 -16.68462 -16.46262 -16.34140 -15.87861 -15.65509 -15.36508 -15.02874 -14.69290 -14.09206 -13.93424 -13.77787 -13.27148 -13.03795 -12.64096 -12.37675 -12.21604 -12.18405 -11.96340 -11.54996 -11.30879 -11.28657 -10.96287 -10.69615 -10.60082 -10.26625 -10.08731 -9.73421 -9.24896 -8.97252 -8.53391 -7.86932 -7.76866 -6.14248 -4.19687 0.75559 1.08052 1.26247 3.03167 3.10056 3.23854 3.29002 3.32041 3.35845 3.79232 4.04651 4.36361 4.72012 4.77718 4.80609 4.86031 4.99375 5.16678 5.20970 5.25322 5.44520 5.50587 5.73833 5.77490 5.84140 5.86977 6.07059 6.34727 6.80548 7.00079 7.27336 7.35129 7.52996 7.81032 8.10469 8.17201 8.69107 8.87209 9.45922 10.93969 Molecular weight = 344.03amu Principal moments of inertia in cm(-1) A = 0.018284 B = 0.002323 C = 0.002161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.010081 B =12050.025833 C =12956.124536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.595 5.595 3 C 0.244 3.756 4 C -0.530 4.530 5 H 0.058 0.942 6 C 0.062 3.938 7 N -0.893 5.893 8 Si 0.899 3.101 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.282 1.282 12 C 0.499 3.501 13 O -0.537 6.537 14 C 0.099 3.901 15 N -0.718 5.718 16 C 0.262 3.738 17 C -0.228 4.228 18 C 0.157 3.843 19 F -0.134 7.134 20 C -0.196 4.196 21 C -0.012 4.012 22 Br -0.042 7.042 23 C -0.179 4.179 24 H 0.049 0.951 25 H 0.079 0.921 26 H 0.058 0.942 27 H 0.035 0.965 28 H 0.045 0.955 29 H 0.264 0.736 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.418 0.582 33 H 0.141 0.859 34 H 0.139 0.861 35 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.688 -23.528 3.067 24.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.327 5.327 3 C 0.126 3.874 4 C -0.568 4.568 5 H 0.076 0.924 6 C -0.141 4.141 7 N -0.532 5.532 8 Si 0.727 3.273 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.208 1.208 12 C 0.284 3.716 13 O -0.415 6.415 14 C -0.029 4.029 15 N -0.348 5.348 16 C 0.153 3.847 17 C -0.253 4.253 18 C 0.136 3.864 19 F -0.112 7.112 20 C -0.219 4.219 21 C -0.093 4.093 22 Br 0.044 6.956 23 C -0.204 4.204 24 H 0.068 0.932 25 H 0.097 0.903 26 H 0.077 0.923 27 H 0.053 0.947 28 H 0.063 0.937 29 H 0.074 0.926 30 H 0.108 0.892 31 H 0.106 0.894 32 H 0.257 0.743 33 H 0.158 0.842 34 H 0.157 0.843 35 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -5.664 -23.661 3.115 24.528 hybrid contribution -0.121 0.844 -0.992 1.308 sum -5.786 -22.817 2.123 23.635 Atomic orbital electron populations 1.21731 0.81010 1.02988 1.00846 1.48131 1.06446 1.07625 1.70465 1.19368 0.92607 0.77694 0.97778 1.21430 1.36860 1.06419 0.92129 0.92362 1.24941 0.95227 0.96328 0.97575 1.69934 1.38175 1.14338 1.30761 0.86422 0.78157 0.78366 0.84362 1.19783 1.20880 1.20798 1.20086 0.88176 0.85093 0.78218 1.90678 1.13646 1.86684 1.50521 1.21279 0.92486 0.85993 1.03138 1.44568 1.10130 1.00795 1.79306 1.17317 0.91522 0.84707 0.91141 1.20646 0.94901 0.96149 1.13563 1.17118 0.77195 0.92874 0.99227 1.91516 1.31104 1.95033 1.93590 1.20679 0.91070 0.99398 1.10796 1.21089 0.92788 0.92286 1.03109 1.96743 1.58378 1.43001 1.97505 1.20554 1.00173 0.89694 1.09970 0.93236 0.90267 0.92347 0.94656 0.93684 0.92638 0.89230 0.89356 0.74262 0.84165 0.84279 0.84313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.08 10.24 59.85 0.61 1.70 16 2 N -0.59 -11.55 2.86 -182.96 -0.52 -12.07 16 3 C 0.24 6.08 5.16 -5.19 -0.03 6.05 16 4 C -0.53 -14.47 9.39 -34.44 -0.32 -14.80 16 5 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 6 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 7 N -0.89 -25.88 13.29 55.43 0.74 -25.15 16 8 Si 0.90 21.33 29.54 -169.99 -5.02 16.31 16 9 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 12 C 0.50 9.31 7.74 -10.98 -0.09 9.23 16 13 O -0.54 -12.29 15.25 5.55 0.08 -12.20 16 14 C 0.10 1.28 3.94 -5.19 -0.02 1.26 16 15 N -0.72 -9.23 5.70 -59.82 -0.34 -9.57 16 16 C 0.26 3.01 6.65 -83.80 -0.56 2.46 16 17 C -0.23 -2.45 9.29 -39.31 -0.37 -2.81 16 18 C 0.16 1.68 7.30 -39.45 -0.29 1.39 16 19 F -0.13 -1.46 17.27 2.25 0.04 -1.42 16 20 C -0.20 -1.99 9.76 -39.45 -0.39 -2.37 16 21 C -0.01 -0.13 6.22 -39.56 -0.25 -0.37 16 22 Br -0.04 -0.39 33.70 -68.01 -2.29 -2.68 16 23 C -0.18 -1.95 9.63 -39.34 -0.38 -2.33 16 24 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 25 H 0.08 1.16 8.07 -51.93 -0.42 0.74 16 26 H 0.06 0.62 6.44 -51.93 -0.33 0.29 16 27 H 0.04 0.89 8.07 -51.93 -0.42 0.47 16 28 H 0.05 1.27 7.42 -51.93 -0.39 0.88 16 29 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 30 H 0.09 1.02 7.21 -51.93 -0.37 0.64 16 31 H 0.09 0.94 7.91 -51.93 -0.41 0.53 16 32 H 0.42 5.84 7.45 -40.82 -0.30 5.54 16 33 H 0.14 1.31 6.73 -52.49 -0.35 0.96 16 34 H 0.14 1.20 8.06 -52.49 -0.42 0.78 16 35 H 0.14 1.40 8.06 -52.49 -0.42 0.98 16 LS Contribution 329.38 15.07 4.96 4.96 Total: -1.00 -30.92 329.38 -8.33 -39.25 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: -3.81 Total: 1.56 kcal Atomic # 6 Polarization: 3.18 SS G_CDS: -2.16 Total: 1.02 kcal Atomic # 7 Polarization: -46.66 SS G_CDS: -0.13 Total: -46.79 kcal Atomic # 8 Polarization: -12.29 SS G_CDS: 0.08 Total: -12.20 kcal Atomic # 9 Polarization: -1.46 SS G_CDS: 0.04 Total: -1.42 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 35 Polarization: -0.39 SS G_CDS: -2.29 Total: -2.68 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -30.92 -8.33 -39.25 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095410317.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.602 kcal (2) G-P(sol) polarization free energy of solvation -30.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds