Wall clock time and date at job start Tue Mar 31 2020 06:26:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.32881 * 126.05593 * 2 1 4 4 N 1.38693 * 107.92148 * 180.27529 * 3 2 1 5 5 C 1.46499 * 125.97285 * 179.72962 * 4 3 2 6 6 C 1.53008 * 109.46915 * 270.02269 * 5 4 3 7 7 H 1.08998 * 109.47147 * 55.00021 * 6 5 4 8 8 C 1.47192 * 109.46856 * 294.99968 * 6 5 4 9 9 N 5.16916 * 149.04623 * 261.06802 * 2 1 3 10 10 C 1.52997 * 109.46838 * 175.00104 * 6 5 4 11 11 C 1.50709 * 109.46883 * 185.00010 * 10 6 5 12 12 H 1.07998 * 120.00129 * 0.02562 * 11 10 6 13 13 C 1.37872 * 119.99937 * 179.97438 * 11 10 6 14 14 N 1.31513 * 120.00002 * 179.97438 * 13 11 10 15 15 Si 1.86804 * 120.00326 * 0.02562 * 13 11 10 16 16 H 1.48494 * 109.47366 * 89.99593 * 15 13 11 17 17 H 1.48503 * 109.47193 * 209.99810 * 15 13 11 18 18 H 1.48508 * 109.46775 * 329.99316 * 15 13 11 19 19 C 1.34753 * 108.05780 * 359.74534 * 4 3 2 20 20 O 1.21778 * 125.94532 * 180.02562 * 19 4 3 21 21 N 1.34766 * 108.11326 * 0.02562 * 19 4 3 22 22 C 1.40150 * 125.99354 * 179.97438 * 21 19 4 23 23 C 1.38842 * 120.05247 * 293.01904 * 22 21 19 24 24 C 1.38115 * 119.94363 * 179.97438 * 23 22 21 25 25 C 1.38383 * 120.05249 * 0.27311 * 24 23 22 26 26 Cl 1.73607 * 119.94329 * 179.70162 * 25 24 23 27 27 C 1.38388 * 120.11293 * 359.44911 * 25 24 23 28 28 C 1.38107 * 120.05253 * 0.55186 * 27 25 24 29 29 H 1.09006 * 109.47362 * 274.97358 * 1 2 3 30 30 H 1.08999 * 109.47199 * 34.97517 * 1 2 3 31 31 H 1.08998 * 109.47455 * 154.97833 * 1 2 3 32 32 H 1.08003 * 126.03914 * 0.02562 * 3 2 1 33 33 H 1.09000 * 109.47194 * 30.01766 * 5 4 3 34 34 H 1.09000 * 109.47708 * 150.02576 * 5 4 3 35 35 H 1.09001 * 109.47351 * 304.99338 * 10 6 5 36 36 H 1.08993 * 109.47941 * 65.00142 * 10 6 5 37 37 H 0.97004 * 120.00401 * 180.02562 * 14 13 11 38 38 H 1.08001 * 120.03026 * 359.95426 * 23 22 21 39 39 H 1.08007 * 119.97100 * 179.97438 * 24 23 22 40 40 H 1.08001 * 119.97367 * 180.25261 * 27 25 24 41 41 H 1.08000 * 120.03180 * 179.75142 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2890 1.0743 0.0000 4 7 3.6071 0.6426 -0.0063 5 6 4.7938 1.5015 -0.0141 6 6 5.1989 1.7985 -1.4594 7 1 4.3503 2.2250 -1.9942 8 6 5.6171 0.5504 -2.1181 9 7 5.9399 -0.4128 -2.6265 10 6 6.3604 2.7943 -1.4690 11 6 6.6788 3.1810 -2.8904 12 1 6.1093 2.7591 -3.7053 13 6 7.6963 4.0742 -3.1504 14 7 7.9744 4.4113 -4.3908 15 14 8.6810 4.8047 -1.7410 16 1 9.8513 3.9372 -1.4529 17 1 9.1515 6.1620 -2.1170 18 1 7.8226 4.8955 -0.5325 19 6 3.6053 -0.7049 -0.0044 20 8 4.5902 -1.4211 -0.0082 21 7 2.3239 -1.1222 0.0023 22 6 1.8918 -2.4554 0.0057 23 6 2.1190 -3.2628 -1.1007 24 6 1.6927 -4.5765 -1.0947 25 6 1.0346 -5.0865 0.0107 26 17 0.4932 -6.7360 0.0121 27 6 0.8121 -4.2855 1.1170 28 6 1.2364 -2.9712 1.1159 29 1 -0.3634 0.0891 1.0238 30 1 -0.3633 0.8421 -0.5891 31 1 -0.3634 -0.9312 -0.4346 32 1 1.9570 2.1020 0.0004 33 1 4.5693 2.4362 0.4996 34 1 5.6129 0.9943 0.4958 35 1 6.0811 3.6839 -0.9044 36 1 7.2370 2.3347 -1.0126 37 1 8.6906 5.0395 -4.5739 38 1 2.6283 -2.8639 -1.9655 39 1 1.8689 -5.2049 -1.9553 40 1 0.3019 -4.6870 1.9800 41 1 1.0589 -2.3452 1.9778 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095430266.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:30 Heat of formation + Delta-G solvation = 64.426192 kcal Electronic energy + Delta-G solvation = -26759.401212 eV Core-core repulsion = 22859.702615 eV Total energy + Delta-G solvation = -3899.698597 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.098 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.59262 -39.59549 -37.29177 -36.85191 -36.73933 -35.01453 -33.70047 -32.30375 -31.68951 -31.45284 -29.91525 -27.99077 -26.12548 -24.50888 -23.35631 -22.89264 -21.59008 -21.16524 -20.46112 -18.26341 -17.27342 -16.93249 -16.90607 -16.56164 -15.91356 -15.41922 -15.14191 -14.85119 -14.47670 -14.21575 -13.98412 -13.83469 -13.75844 -13.49022 -13.40844 -13.27301 -12.81042 -12.57252 -12.43390 -12.19280 -12.17212 -11.97111 -11.86482 -11.68435 -11.37356 -11.29325 -11.15333 -10.94601 -10.53905 -10.41146 -10.22011 -10.03188 -9.77838 -9.49511 -9.40274 -8.96452 -8.66007 -7.67396 -6.14745 -4.16310 0.57009 0.85436 1.71227 2.04100 2.11928 2.89392 3.13960 3.24217 3.30438 3.32324 3.34181 3.65425 3.70690 4.34139 4.38197 4.43195 4.55711 4.62157 4.81464 4.84893 4.95619 5.07048 5.18119 5.18994 5.21306 5.28082 5.30356 5.48991 5.50620 5.54527 5.56623 5.70864 5.78966 5.88642 6.00290 6.05536 6.15829 6.20643 6.53766 6.82424 6.87338 7.01064 7.33457 7.56472 8.33378 8.36238 8.48211 8.88070 9.44147 10.98207 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.021412 B = 0.002381 C = 0.002258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.346294 B =11758.689354 C =12396.581646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.003 3.997 3 C 0.010 3.990 4 N -0.532 5.532 5 C 0.134 3.866 6 C 0.003 3.997 7 H 0.111 0.889 8 C 0.227 3.773 9 N -0.444 5.444 10 C -0.003 4.003 11 C -0.529 4.529 12 H 0.074 0.926 13 C 0.072 3.928 14 N -0.895 5.895 15 Si 0.878 3.122 16 H -0.276 1.276 17 H -0.286 1.286 18 H -0.262 1.262 19 C 0.654 3.346 20 O -0.546 6.546 21 N -0.495 5.495 22 C 0.160 3.840 23 C -0.089 4.089 24 C -0.096 4.096 25 C -0.033 4.033 26 Cl -0.067 7.067 27 C -0.101 4.101 28 C -0.099 4.099 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.067 0.933 32 H 0.187 0.813 33 H 0.111 0.889 34 H 0.096 0.904 35 H 0.041 0.959 36 H 0.024 0.976 37 H 0.265 0.735 38 H 0.137 0.863 39 H 0.141 0.859 40 H 0.141 0.859 41 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.574 -11.089 14.410 28.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.100 4.100 3 C -0.113 4.113 4 N -0.251 5.251 5 C 0.012 3.988 6 C -0.019 4.019 7 H 0.129 0.871 8 C -0.091 4.091 9 N -0.120 5.120 10 C -0.042 4.042 11 C -0.566 4.566 12 H 0.092 0.908 13 C -0.131 4.131 14 N -0.533 5.533 15 Si 0.705 3.295 16 H -0.202 1.202 17 H -0.212 1.212 18 H -0.187 1.187 19 C 0.357 3.643 20 O -0.421 6.421 21 N -0.214 5.214 22 C 0.070 3.930 23 C -0.108 4.108 24 C -0.116 4.116 25 C -0.059 4.059 26 Cl -0.038 7.038 27 C -0.120 4.120 28 C -0.119 4.119 29 H 0.092 0.908 30 H 0.103 0.897 31 H 0.086 0.914 32 H 0.204 0.796 33 H 0.129 0.871 34 H 0.115 0.885 35 H 0.059 0.941 36 H 0.042 0.958 37 H 0.075 0.925 38 H 0.155 0.845 39 H 0.159 0.841 40 H 0.158 0.842 41 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -20.215 -13.070 13.525 27.612 hybrid contribution 0.583 0.785 0.622 1.159 sum -19.633 -12.285 14.147 27.139 Atomic orbital electron populations 1.20247 0.86797 1.03599 1.02886 1.20201 0.94283 0.83929 1.11565 1.21660 0.81669 0.99279 1.08720 1.45469 1.06990 1.05946 1.66741 1.21908 0.85225 0.94311 0.97317 1.19385 1.02071 0.88129 0.92315 0.87136 1.28709 0.93088 0.93632 0.93628 1.81006 1.09097 1.12546 1.09375 1.19631 0.91766 0.93082 0.99711 1.20959 1.18415 1.26539 0.90724 0.90809 1.24987 0.96616 0.95947 0.95520 1.69901 1.30774 1.33928 1.18709 0.86814 0.80958 0.78739 0.83002 1.20194 1.21204 1.18658 1.16225 0.82946 0.82682 0.82420 1.91116 1.34271 1.58212 1.58487 1.42605 1.06610 1.03698 1.68476 1.17316 0.98979 0.82493 0.94257 1.21276 0.98444 0.93247 0.97874 1.20965 0.97598 0.95086 0.97921 1.20998 1.01678 0.86622 0.96633 1.98381 1.88606 1.18204 1.98639 1.20900 1.00661 0.92780 0.97641 1.21144 0.98649 0.94978 0.97139 0.90758 0.89743 0.91423 0.79579 0.87061 0.88546 0.94105 0.95801 0.92484 0.84493 0.84104 0.84157 0.84440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.47 10.17 36.00 0.37 -0.10 16 2 C 0.00 0.03 6.85 -81.28 -0.56 -0.53 16 3 C 0.01 0.09 11.39 -16.29 -0.19 -0.09 16 4 N -0.53 -7.23 2.65 -121.40 -0.32 -7.55 16 5 C 0.13 1.81 5.45 -4.04 -0.02 1.79 16 6 C 0.00 0.06 2.42 -93.41 -0.23 -0.17 16 7 H 0.11 1.78 8.14 -51.93 -0.42 1.36 16 8 C 0.23 4.94 12.50 -20.76 -0.26 4.68 16 9 N -0.44 -10.78 18.54 42.15 0.78 -9.99 16 10 C 0.00 -0.06 3.49 -27.88 -0.10 -0.16 16 11 C -0.53 -14.00 9.15 -34.44 -0.32 -14.31 16 12 H 0.07 2.17 7.84 -52.49 -0.41 1.75 16 13 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 14 N -0.90 -26.74 13.96 55.43 0.77 -25.97 16 15 Si 0.88 20.23 27.47 -169.99 -4.67 15.56 16 16 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 17 H -0.29 -6.60 7.11 56.52 0.40 -6.19 16 18 H -0.26 -5.46 6.54 56.52 0.37 -5.09 16 19 C 0.65 10.80 7.78 -86.95 -0.68 10.12 16 20 O -0.55 -11.37 17.05 5.12 0.09 -11.28 16 21 N -0.50 -6.48 2.80 -60.75 -0.17 -6.65 16 22 C 0.16 1.91 5.06 -83.60 -0.42 1.49 16 23 C -0.09 -1.08 9.92 -39.40 -0.39 -1.47 16 24 C -0.10 -0.97 9.82 -39.57 -0.39 -1.36 16 25 C -0.03 -0.30 6.32 -39.47 -0.25 -0.55 16 26 Cl -0.07 -0.57 28.95 -51.86 -1.50 -2.07 16 27 C -0.10 -0.83 9.82 -39.57 -0.39 -1.22 16 28 C -0.10 -0.92 9.94 -39.40 -0.39 -1.32 16 29 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 0.44 7.79 -51.93 -0.40 0.04 16 32 H 0.19 1.09 8.06 -52.48 -0.42 0.67 16 33 H 0.11 1.06 8.14 -51.93 -0.42 0.63 16 34 H 0.10 1.40 8.07 -51.93 -0.42 0.98 16 35 H 0.04 0.76 7.20 -51.93 -0.37 0.38 16 36 H 0.02 0.50 7.57 -51.93 -0.39 0.11 16 37 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 38 H 0.14 1.84 8.06 -52.49 -0.42 1.42 16 39 H 0.14 1.20 8.06 -52.48 -0.42 0.78 16 40 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 41 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 LS Contribution 377.36 15.07 5.69 5.69 Total: -1.00 -36.19 377.36 -8.61 -44.80 By element: Atomic # 1 Polarization: 3.74 SS G_CDS: -4.97 Total: -1.23 kcal Atomic # 6 Polarization: 3.01 SS G_CDS: -4.30 Total: -1.30 kcal Atomic # 7 Polarization: -51.23 SS G_CDS: 1.06 Total: -50.16 kcal Atomic # 8 Polarization: -11.37 SS G_CDS: 0.09 Total: -11.28 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -4.67 Total: 15.56 kcal Atomic # 17 Polarization: -0.57 SS G_CDS: -1.50 Total: -2.07 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -36.19 -8.61 -44.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095430266.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.231 kcal (2) G-P(sol) polarization free energy of solvation -36.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.804 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds