Wall clock time and date at job start Tue Mar 31 2020 06:26:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.32881 * 126.05103 * 2 1 4 4 N 1.38698 * 107.91704 * 179.97438 * 3 2 1 5 5 C 1.46496 * 125.97048 * 179.97438 * 4 3 2 6 6 C 1.52994 * 109.47639 * 90.02540 * 5 4 3 7 7 H 1.09005 * 109.46824 * 305.00287 * 6 5 4 8 8 C 1.47200 * 109.46997 * 64.99361 * 6 5 4 9 9 N 5.17275 * 149.30089 * 98.90659 * 2 1 3 10 10 C 1.52995 * 109.47344 * 184.99734 * 6 5 4 11 11 C 1.50701 * 109.46974 * 174.99751 * 10 6 5 12 12 H 1.07997 * 120.00489 * 0.02562 * 11 10 6 13 13 C 1.37879 * 120.00062 * 180.02562 * 11 10 6 14 14 N 1.31519 * 119.99816 * 359.97438 * 13 11 10 15 15 Si 1.86793 * 120.00270 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.46958 * 60.00052 * 15 13 11 17 17 H 1.48503 * 109.47308 * 179.97438 * 15 13 11 18 18 H 1.48494 * 109.47294 * 300.00072 * 15 13 11 19 19 C 1.34760 * 108.05208 * 0.02562 * 4 3 2 20 20 O 1.21780 * 125.93539 * 180.02562 * 19 4 3 21 21 N 1.34755 * 108.12097 * 359.97438 * 19 4 3 22 22 C 1.40145 * 125.99385 * 180.02562 * 21 19 4 23 23 C 1.38851 * 120.05681 * 112.69888 * 22 21 19 24 24 C 1.38105 * 119.94492 * 179.72233 * 23 22 21 25 25 C 1.38387 * 120.05628 * 0.55128 * 24 23 22 26 26 Cl 1.73599 * 119.94642 * 179.74647 * 25 24 23 27 27 C 1.38384 * 120.11045 * 359.72175 * 25 24 23 28 28 C 1.38109 * 120.05520 * 0.02562 * 27 25 24 29 29 H 1.08996 * 109.46743 * 0.02562 * 1 2 3 30 30 H 1.09003 * 109.46975 * 120.01698 * 1 2 3 31 31 H 1.08994 * 109.47080 * 240.01752 * 1 2 3 32 32 H 1.07999 * 126.04398 * 0.24911 * 3 2 1 33 33 H 1.09003 * 109.46670 * 210.02374 * 5 4 3 34 34 H 1.08997 * 109.47080 * 330.01926 * 5 4 3 35 35 H 1.08994 * 109.47320 * 294.99920 * 10 6 5 36 36 H 1.08995 * 109.46993 * 55.00228 * 10 6 5 37 37 H 0.97002 * 119.99685 * 179.97438 * 14 13 11 38 38 H 1.07997 * 120.02138 * 359.97438 * 23 22 21 39 39 H 1.08001 * 119.97533 * 180.27877 * 24 23 22 40 40 H 1.07995 * 119.97529 * 179.97438 * 27 25 24 41 41 H 1.07999 * 120.03429 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2891 1.0743 0.0000 4 7 3.6072 0.6426 0.0006 5 6 4.7939 1.5016 0.0003 6 6 5.2072 1.8011 1.4425 7 1 4.3616 2.2284 1.9815 8 6 5.6291 0.5541 2.1011 9 7 5.9549 -0.4089 2.6090 10 6 6.3688 2.7969 1.4439 11 6 6.6951 3.1861 2.8628 12 1 6.1308 2.7649 3.6817 13 6 7.7141 4.0798 3.1155 14 7 8.4017 4.5923 2.1184 15 14 8.1191 4.5616 4.8742 16 1 8.5049 3.3509 5.6428 17 1 9.2465 5.5282 4.8756 18 1 6.9284 5.1882 5.5025 19 6 3.6053 -0.7049 0.0004 20 8 4.5903 -1.4211 0.0012 21 7 2.3239 -1.1222 0.0002 22 6 1.8919 -2.4554 0.0005 23 6 1.2362 -2.9738 1.1092 24 6 0.8063 -4.2862 1.1048 25 6 1.0388 -5.0879 0.0010 26 17 0.5031 -6.7392 0.0011 27 6 1.6971 -4.5754 -1.1030 28 6 2.1244 -3.2621 -1.1056 29 1 -0.3633 1.0276 -0.0005 30 1 -0.3633 -0.5141 -0.8899 31 1 -0.3633 -0.5135 0.8901 32 1 1.9571 2.1020 0.0038 33 1 5.6100 0.9934 -0.5134 34 1 4.5665 2.4353 -0.5140 35 1 7.2427 2.3364 0.9833 36 1 6.0862 3.6854 0.8794 37 1 9.1184 5.2213 2.2962 38 1 1.0588 -2.3498 1.9727 39 1 0.2922 -4.6886 1.9651 40 1 1.8778 -5.2031 -1.9631 41 1 2.6378 -2.8623 -1.9675 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095430267.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:35 Heat of formation + Delta-G solvation = 59.666914 kcal Electronic energy + Delta-G solvation = -26703.208667 eV Core-core repulsion = 22803.303693 eV Total energy + Delta-G solvation = -3899.904974 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.098 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.54511 -39.56874 -37.21216 -36.81144 -36.68187 -34.96019 -33.66719 -32.27908 -31.64580 -31.38839 -29.78248 -27.66237 -25.95783 -24.43540 -23.34510 -22.88165 -21.87547 -21.15020 -20.42186 -18.23171 -17.24011 -16.88221 -16.57638 -16.46465 -15.72867 -15.48899 -14.94744 -14.82387 -14.60779 -14.31799 -13.98096 -13.78125 -13.72471 -13.44446 -13.31756 -13.08665 -12.80109 -12.48836 -12.22984 -12.20344 -12.05587 -11.84860 -11.77173 -11.59476 -11.26931 -11.15553 -11.06401 -10.85918 -10.64740 -10.39266 -10.26933 -10.16295 -9.60158 -9.47935 -9.31653 -8.93809 -8.49406 -7.63475 -6.13892 -4.17375 0.59402 0.86993 1.72766 2.08687 2.16433 2.94108 3.16068 3.28580 3.33292 3.36507 3.39744 3.70792 3.77645 4.37497 4.39738 4.44563 4.62256 4.69484 4.83487 4.88543 4.97589 5.09648 5.23620 5.24159 5.29430 5.31049 5.41045 5.50352 5.53792 5.59856 5.66933 5.72907 5.79601 5.92834 6.09465 6.11396 6.25725 6.34904 6.60418 6.92289 7.31616 7.38129 7.45041 7.80463 8.16584 8.39482 8.53800 8.86267 9.48251 10.96853 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.019665 B = 0.002330 C = 0.002234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.517891 B =12013.212306 C =12528.698729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.000 4.000 3 C 0.012 3.988 4 N -0.532 5.532 5 C 0.136 3.864 6 C -0.006 4.006 7 H 0.105 0.895 8 C 0.230 3.770 9 N -0.452 5.452 10 C 0.034 3.966 11 C -0.527 4.527 12 H 0.056 0.944 13 C 0.064 3.936 14 N -0.891 5.891 15 Si 0.893 3.107 16 H -0.277 1.277 17 H -0.286 1.286 18 H -0.275 1.275 19 C 0.654 3.346 20 O -0.546 6.546 21 N -0.496 5.496 22 C 0.162 3.838 23 C -0.099 4.099 24 C -0.099 4.099 25 C -0.033 4.033 26 Cl -0.068 7.068 27 C -0.098 4.098 28 C -0.091 4.091 29 H 0.085 0.915 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.187 0.813 33 H 0.096 0.904 34 H 0.111 0.889 35 H 0.029 0.971 36 H 0.042 0.958 37 H 0.264 0.736 38 H 0.138 0.862 39 H 0.141 0.859 40 H 0.140 0.860 41 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.326 -11.229 -9.397 26.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.103 4.103 3 C -0.111 4.111 4 N -0.251 5.251 5 C 0.015 3.985 6 C -0.029 4.029 7 H 0.123 0.877 8 C -0.088 4.088 9 N -0.128 5.128 10 C -0.005 4.005 11 C -0.565 4.565 12 H 0.074 0.926 13 C -0.139 4.139 14 N -0.529 5.529 15 Si 0.720 3.280 16 H -0.202 1.202 17 H -0.211 1.211 18 H -0.200 1.200 19 C 0.357 3.643 20 O -0.421 6.421 21 N -0.215 5.215 22 C 0.072 3.928 23 C -0.119 4.119 24 C -0.118 4.118 25 C -0.060 4.060 26 Cl -0.039 7.039 27 C -0.117 4.117 28 C -0.111 4.111 29 H 0.104 0.896 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.204 0.796 33 H 0.114 0.886 34 H 0.130 0.870 35 H 0.047 0.953 36 H 0.060 0.940 37 H 0.073 0.927 38 H 0.156 0.844 39 H 0.159 0.841 40 H 0.158 0.842 41 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -20.925 -13.195 -8.678 26.216 hybrid contribution 0.263 0.644 0.890 1.130 sum -20.662 -12.551 -7.787 25.399 Atomic orbital electron populations 1.20228 0.86847 1.03777 1.02527 1.20187 0.94249 0.83951 1.11895 1.21699 0.81765 0.99209 1.08423 1.45550 1.07065 1.05943 1.66565 1.21912 0.84932 0.94192 0.97506 1.19634 1.02642 0.88447 0.92142 0.87726 1.28874 0.92819 0.93613 0.93505 1.81016 1.09557 1.12433 1.09782 1.19157 0.90468 0.92117 0.98718 1.21041 1.17566 1.26035 0.91892 0.92583 1.24940 0.95797 0.95915 0.97225 1.69922 1.21669 1.30426 1.30872 0.86635 0.78058 0.78411 0.84876 1.20236 1.21127 1.20024 1.16239 0.82897 0.82732 0.82433 1.91116 1.34245 1.58238 1.58498 1.42584 1.06620 1.03686 1.68588 1.17328 0.98725 0.82538 0.94216 1.21197 0.98430 0.95061 0.97176 1.20919 1.00435 0.92773 0.97660 1.20985 1.01782 0.86529 0.96696 1.98379 1.88819 1.18035 1.98637 1.20925 0.97857 0.95059 0.97873 1.21186 0.98900 0.93247 0.97761 0.89584 0.91302 0.91283 0.79610 0.88562 0.87041 0.95275 0.94023 0.92653 0.84444 0.84145 0.84170 0.84581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.48 10.07 36.01 0.36 -0.11 16 2 C 0.00 0.00 6.85 -81.27 -0.56 -0.56 16 3 C 0.01 0.12 11.36 -16.29 -0.19 -0.06 16 4 N -0.53 -7.54 2.65 -121.41 -0.32 -7.86 16 5 C 0.14 1.98 5.45 -4.05 -0.02 1.95 16 6 C -0.01 -0.11 2.42 -93.41 -0.23 -0.34 16 7 H 0.10 1.73 8.14 -51.93 -0.42 1.31 16 8 C 0.23 5.10 12.50 -20.75 -0.26 4.84 16 9 N -0.45 -11.14 18.54 42.17 0.78 -10.36 16 10 C 0.03 0.76 4.42 -27.88 -0.12 0.64 16 11 C -0.53 -13.84 8.60 -34.44 -0.30 -14.14 16 12 H 0.06 1.48 7.59 -52.49 -0.40 1.08 16 13 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 14 N -0.89 -25.07 13.29 55.43 0.74 -24.34 16 15 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 16 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 17 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 18 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 19 C 0.65 11.10 7.79 -86.95 -0.68 10.42 16 20 O -0.55 -11.66 17.05 5.12 0.09 -11.58 16 21 N -0.50 -6.66 2.80 -60.74 -0.17 -6.83 16 22 C 0.16 1.99 5.31 -83.60 -0.44 1.54 16 23 C -0.10 -1.04 9.94 -39.40 -0.39 -1.43 16 24 C -0.10 -0.90 9.82 -39.57 -0.39 -1.29 16 25 C -0.03 -0.31 6.32 -39.47 -0.25 -0.56 16 26 Cl -0.07 -0.58 28.95 -51.86 -1.50 -2.08 16 27 C -0.10 -0.93 9.82 -39.57 -0.39 -1.32 16 28 C -0.09 -1.02 9.92 -39.40 -0.39 -1.41 16 29 H 0.09 0.35 8.10 -51.93 -0.42 -0.07 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.19 1.17 8.06 -52.49 -0.42 0.75 16 33 H 0.10 1.52 8.07 -51.93 -0.42 1.10 16 34 H 0.11 1.21 8.14 -51.93 -0.42 0.78 16 35 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.04 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 38 H 0.14 1.32 8.06 -52.49 -0.42 0.90 16 39 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 40 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 41 H 0.14 1.48 8.06 -52.49 -0.42 1.06 16 LS Contribution 381.40 15.07 5.75 5.75 Total: -1.00 -35.21 381.40 -9.02 -44.23 By element: Atomic # 1 Polarization: 2.14 SS G_CDS: -5.02 Total: -2.89 kcal Atomic # 6 Polarization: 4.15 SS G_CDS: -4.33 Total: -0.18 kcal Atomic # 7 Polarization: -50.41 SS G_CDS: 1.03 Total: -49.38 kcal Atomic # 8 Polarization: -11.66 SS G_CDS: 0.09 Total: -11.58 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 17 Polarization: -0.58 SS G_CDS: -1.50 Total: -2.08 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -35.21 -9.02 -44.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095430267.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.893 kcal (2) G-P(sol) polarization free energy of solvation -35.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.226 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds