Wall clock time and date at job start Tue Mar 31 2020 06:11:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86801 * 119.99759 * 2 1 4 4 H 1.48500 * 109.46996 * 240.00113 * 3 2 1 5 5 H 1.48496 * 109.47165 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46962 * 120.00130 * 3 2 1 7 7 C 1.37874 * 120.00071 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99671 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99970 * 359.97438 * 7 2 1 10 10 N 1.46507 * 109.47369 * 180.02562 * 9 7 2 11 11 C 1.46495 * 119.99912 * 279.93898 * 10 9 7 12 12 C 1.53003 * 109.46515 * 267.98749 * 11 10 9 13 13 F 1.39895 * 109.47153 * 60.00420 * 12 11 10 14 14 F 1.39909 * 109.46933 * 180.02562 * 12 11 10 15 15 F 1.39901 * 109.47254 * 299.99936 * 12 11 10 16 16 C 1.34778 * 119.99526 * 99.92673 * 10 9 7 17 17 O 1.21578 * 119.99558 * 186.70429 * 16 10 9 18 18 C 1.47665 * 120.00359 * 6.71758 * 16 10 9 19 19 C 1.40783 * 119.45917 * 329.58834 * 18 16 10 20 20 C 1.35101 * 121.44267 * 179.97438 * 19 18 16 21 21 C 1.41945 * 120.25745 * 0.02562 * 20 19 18 22 22 N 1.32255 * 130.72556 * 179.97438 * 21 20 19 23 23 S 1.55517 * 109.49488 * 179.97438 * 22 21 20 24 24 N 1.55535 * 100.21567 * 359.97438 * 23 22 21 25 25 C 1.32477 * 109.37810 * 359.97438 * 24 23 22 26 26 C 1.37982 * 119.46250 * 149.57717 * 18 16 10 27 27 H 0.97002 * 120.00143 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.47430 * 59.99926 * 9 7 2 29 29 H 1.09001 * 109.47248 * 299.99856 * 9 7 2 30 30 H 1.09000 * 109.47475 * 27.98817 * 11 10 9 31 31 H 1.09001 * 109.47428 * 147.99315 * 11 10 9 32 32 H 1.08002 * 119.27949 * 0.02562 * 19 18 16 33 33 H 1.08001 * 119.87154 * 180.02562 * 20 19 18 34 34 H 1.07998 * 120.15577 * 0.04106 * 26 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2031 -3.6127 -0.0005 11 6 2.8455 -4.0271 -1.2502 12 6 2.0149 -5.1303 -1.9090 13 9 0.7310 -4.6469 -2.1827 14 9 2.6287 -5.5266 -3.1022 15 9 1.9260 -6.2266 -1.0444 16 6 2.4880 -4.2556 1.1493 17 8 3.3655 -5.0967 1.1740 18 6 1.7342 -3.9386 2.3788 19 6 1.2269 -2.6385 2.5642 20 6 0.5313 -2.3050 3.6733 21 6 0.2954 -3.2702 4.6869 22 7 -0.3479 -3.1728 5.8383 23 16 -0.3085 -4.5432 6.5725 24 7 0.5015 -5.3836 5.5444 25 6 0.8150 -4.6240 4.5054 26 6 1.5383 -4.9216 3.3271 27 1 -0.4850 0.8400 0.0004 28 1 0.6241 -2.5567 -0.8903 29 1 0.6248 -2.5571 0.8897 30 1 2.9148 -3.1730 -1.9238 31 1 3.8459 -4.4038 -1.0370 32 1 1.3968 -1.8917 1.8027 33 1 0.1533 -1.2999 3.7891 34 1 1.9345 -5.9139 3.1698 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095457320.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:10 Heat of formation + Delta-G solvation = -82.563727 kcal Electronic energy + Delta-G solvation = -28262.885248 eV Core-core repulsion = 23681.166561 eV Total energy + Delta-G solvation = -4581.718686 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.050 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.70565 -47.26091 -47.15269 -40.86609 -39.50573 -36.06365 -35.49235 -33.69676 -33.00321 -30.17314 -29.98906 -27.47868 -27.12816 -23.64228 -23.35836 -22.30597 -21.71433 -19.98589 -18.88136 -18.29903 -18.14795 -17.68383 -17.36707 -16.50249 -16.09305 -15.79987 -15.68453 -15.18926 -14.63653 -14.34869 -14.08356 -14.04056 -13.77411 -13.74558 -13.64435 -13.36388 -13.33972 -12.83658 -12.72838 -12.54380 -12.02352 -11.85871 -11.60809 -11.53830 -11.45319 -11.23260 -11.10681 -10.78976 -10.74518 -10.41570 -10.11566 -9.91252 -9.51785 -8.86440 -8.45804 -8.28840 -8.06756 -6.44855 -4.56688 -0.09433 1.36503 1.49330 1.86560 1.93491 2.85838 3.11997 3.15220 3.19146 3.24650 3.38209 3.91247 4.12002 4.24727 4.25248 4.40987 4.60819 4.86411 4.90392 5.15582 5.18390 5.43409 5.50683 5.53784 5.68593 6.02748 6.14316 6.28019 6.37324 6.66608 6.85332 6.90772 7.08421 7.15033 7.47931 7.68139 7.85174 8.41348 8.58263 9.12505 10.59700 Molecular weight = 345.05amu Principal moments of inertia in cm(-1) A = 0.008836 B = 0.004992 C = 0.003462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3167.931791 B = 5607.880729 C = 8084.813808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.073 3.927 3 Si 0.899 3.101 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.556 4.556 8 H 0.070 0.930 9 C 0.199 3.801 10 N -0.587 5.587 11 C 0.082 3.918 12 C 0.431 3.569 13 F -0.179 7.179 14 F -0.189 7.189 15 F -0.181 7.181 16 C 0.565 3.435 17 O -0.543 6.543 18 C -0.090 4.090 19 C -0.086 4.086 20 C -0.088 4.088 21 C 0.101 3.899 22 N -0.600 5.600 23 S 0.766 5.234 24 N -0.587 5.587 25 C 0.067 3.933 26 C -0.014 4.014 27 H 0.272 0.728 28 H 0.046 0.954 29 H 0.077 0.923 30 H 0.130 0.870 31 H 0.119 0.881 32 H 0.217 0.783 33 H 0.143 0.857 34 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.152 -5.885 4.867 7.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.134 4.134 3 Si 0.726 3.274 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.594 4.594 8 H 0.088 0.912 9 C 0.081 3.919 10 N -0.317 5.317 11 C -0.045 4.045 12 C 0.375 3.625 13 F -0.161 7.161 14 F -0.170 7.170 15 F -0.163 7.163 16 C 0.354 3.646 17 O -0.422 6.422 18 C -0.100 4.100 19 C -0.108 4.108 20 C -0.112 4.112 21 C -0.058 4.058 22 N -0.450 5.450 23 S 0.814 5.186 24 N -0.439 5.439 25 C -0.092 4.092 26 C -0.040 4.040 27 H 0.082 0.918 28 H 0.064 0.936 29 H 0.093 0.907 30 H 0.148 0.852 31 H 0.137 0.863 32 H 0.232 0.768 33 H 0.161 0.839 34 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -0.517 -6.820 6.940 9.744 hybrid contribution 0.785 1.232 -1.777 2.300 sum 0.268 -5.588 5.163 7.613 Atomic orbital electron populations 1.69917 1.06007 1.28278 1.46808 1.24995 0.94931 0.99556 0.93905 0.86509 0.79659 0.82032 0.79205 1.19844 1.20915 1.19676 1.21380 0.94145 0.89931 1.53910 0.91200 1.20663 0.87987 0.82011 1.01248 1.47951 1.44769 1.34315 1.04670 1.22433 0.96696 0.96424 0.88900 1.21543 0.79963 0.84229 0.76787 1.93198 1.41199 1.87725 1.93929 1.93148 1.82940 1.92036 1.48901 1.93194 1.96332 1.57059 1.69666 1.18171 0.82677 0.80487 0.83313 1.90744 1.31774 1.34172 1.85546 1.19708 1.00555 0.94871 0.94886 1.22966 0.92202 0.97647 0.98027 1.20230 1.02052 0.98085 0.90839 1.21646 0.96718 0.95182 0.92246 1.72228 1.28016 1.30871 1.13931 1.78357 1.31021 0.86419 1.22829 1.72240 1.23131 1.38140 1.10420 1.21096 1.02965 0.89883 0.95239 1.20483 0.95029 1.00094 0.88405 0.91779 0.93582 0.90656 0.85204 0.86282 0.76767 0.83912 0.83559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -21.05 13.29 55.43 0.74 -20.32 16 2 C 0.07 1.66 5.36 -17.82 -0.10 1.56 16 3 Si 0.90 18.24 29.54 -169.99 -5.02 13.22 16 4 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 5 H -0.28 -5.82 7.11 56.52 0.40 -5.41 16 6 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 7 C -0.56 -12.27 7.54 -34.44 -0.26 -12.53 16 8 H 0.07 1.54 7.81 -52.49 -0.41 1.13 16 9 C 0.20 4.11 4.51 -5.19 -0.02 4.09 16 10 N -0.59 -10.99 2.39 -176.24 -0.42 -11.41 16 11 C 0.08 1.32 5.45 -4.04 -0.02 1.30 16 12 C 0.43 7.01 3.29 37.16 0.12 7.13 16 13 F -0.18 -3.14 16.28 2.25 0.04 -3.10 16 14 F -0.19 -2.83 17.32 2.25 0.04 -2.80 16 15 F -0.18 -3.21 16.29 2.25 0.04 -3.17 16 16 C 0.56 10.87 6.89 -12.41 -0.09 10.79 16 17 O -0.54 -11.14 15.79 5.30 0.08 -11.05 16 18 C -0.09 -1.65 5.57 -105.18 -0.59 -2.23 16 19 C -0.09 -1.58 7.30 -39.74 -0.29 -1.87 16 20 C -0.09 -1.52 10.06 -39.28 -0.39 -1.92 16 21 C 0.10 1.72 7.16 -83.10 -0.59 1.13 16 22 N -0.60 -9.36 11.43 25.70 0.29 -9.06 16 23 S 0.77 9.28 23.60 -107.50 -2.54 6.74 16 24 N -0.59 -9.00 11.45 25.65 0.29 -8.71 16 25 C 0.07 1.13 7.15 -83.21 -0.59 0.54 16 26 C -0.01 -0.25 9.64 -38.46 -0.37 -0.62 16 27 H 0.27 6.32 8.31 -40.82 -0.34 5.98 16 28 H 0.05 1.02 7.30 -51.93 -0.38 0.64 16 29 H 0.08 1.60 3.89 -53.97 -0.21 1.39 16 30 H 0.13 1.92 8.06 -51.93 -0.42 1.50 16 31 H 0.12 1.79 7.40 -51.93 -0.38 1.40 16 32 H 0.22 4.35 3.07 -52.49 -0.16 4.19 16 33 H 0.14 2.35 8.06 -52.49 -0.42 1.93 16 34 H 0.15 2.40 7.86 -52.49 -0.41 1.98 16 LS Contribution 320.36 15.07 4.83 4.83 Total: -1.00 -26.23 320.36 -6.76 -32.99 By element: Atomic # 1 Polarization: 6.41 SS G_CDS: -1.93 Total: 4.48 kcal Atomic # 6 Polarization: 10.57 SS G_CDS: -3.20 Total: 7.38 kcal Atomic # 7 Polarization: -50.41 SS G_CDS: 0.90 Total: -49.51 kcal Atomic # 8 Polarization: -11.14 SS G_CDS: 0.08 Total: -11.05 kcal Atomic # 9 Polarization: -9.18 SS G_CDS: 0.11 Total: -9.07 kcal Atomic # 14 Polarization: 18.24 SS G_CDS: -5.02 Total: 13.22 kcal Atomic # 16 Polarization: 9.28 SS G_CDS: -2.54 Total: 6.74 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -26.23 -6.76 -32.99 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095457320.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.574 kcal (2) G-P(sol) polarization free energy of solvation -26.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds