Wall clock time and date at job start Tue Mar 31 2020 07:02:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86810 * 119.99841 * 2 1 4 4 H 1.48495 * 109.47138 * 269.99809 * 3 2 1 5 5 H 1.48498 * 109.46847 * 30.00305 * 3 2 1 6 6 H 1.48505 * 109.46908 * 149.99613 * 3 2 1 7 7 C 1.37874 * 120.00183 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99888 * 359.97438 * 7 2 1 9 9 C 1.50701 * 120.00054 * 180.02562 * 7 2 1 10 10 N 1.46497 * 109.47097 * 179.97438 * 9 7 2 11 11 C 1.34776 * 119.99888 * 85.56725 * 10 9 7 12 12 O 1.21705 * 119.99818 * 174.39078 * 11 10 9 13 13 C 1.46584 * 120.00148 * 354.11761 * 11 10 9 14 14 C 1.36645 * 125.45926 * 173.80642 * 13 11 10 15 15 C 1.37465 * 113.29894 * 179.97438 * 14 13 11 16 16 C 1.33817 * 115.09980 * 0.02562 * 15 14 13 17 17 S 1.70611 * 110.95639 * 359.74651 * 16 15 14 18 18 C 1.46504 * 120.00141 * 265.56769 * 10 9 7 19 19 C 1.53001 * 109.47016 * 60.93630 * 18 10 9 20 20 C 1.52991 * 109.47191 * 179.97438 * 19 18 10 21 21 C 1.53008 * 109.46859 * 59.99979 * 20 19 18 22 22 C 1.53001 * 109.47236 * 299.99993 * 21 20 19 23 23 C 1.52999 * 109.46920 * 299.99959 * 22 21 20 24 24 C 1.52998 * 109.47112 * 60.00100 * 23 22 21 25 25 C 1.52996 * 109.47459 * 300.00325 * 20 19 18 26 26 C 1.52998 * 109.46826 * 180.93539 * 18 10 9 27 27 C 1.52996 * 109.46870 * 300.93814 * 18 10 9 28 28 H 0.97006 * 119.99854 * 0.02562 * 1 2 3 29 29 H 1.09003 * 109.47227 * 59.99471 * 9 7 2 30 30 H 1.08998 * 109.47087 * 299.99738 * 9 7 2 31 31 H 1.08006 * 123.35090 * 0.02562 * 14 13 11 32 32 H 1.08002 * 122.45097 * 179.97438 * 15 14 13 33 33 H 1.08004 * 124.52408 * 180.02562 * 16 15 14 34 34 H 1.09003 * 109.47166 * 300.00517 * 19 18 10 35 35 H 1.09005 * 109.47259 * 59.99743 * 19 18 10 36 36 H 1.09005 * 109.47370 * 179.97438 * 20 19 18 37 37 H 1.09008 * 109.47009 * 179.97438 * 21 20 19 38 38 H 1.09001 * 109.46929 * 60.00563 * 21 20 19 39 39 H 1.08998 * 109.46622 * 180.02562 * 22 21 20 40 40 H 1.08994 * 109.47370 * 299.99950 * 23 22 21 41 41 H 1.08996 * 109.46765 * 180.02562 * 23 22 21 42 42 H 1.08999 * 109.47350 * 179.97438 * 24 23 22 43 43 H 1.09003 * 109.46986 * 299.99541 * 25 20 19 44 44 H 1.09003 * 109.47675 * 179.97438 * 25 20 19 45 45 H 1.09003 * 109.47508 * 299.99744 * 26 18 10 46 46 H 1.08997 * 109.47485 * 60.00619 * 26 18 10 47 47 H 1.09005 * 109.47062 * 299.99289 * 27 18 10 48 48 H 1.08996 * 109.47203 * 59.99981 * 27 18 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4403 0.7002 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 7 3.9999 -2.5751 -0.0001 11 6 4.1400 -3.2403 -1.1639 12 8 4.6409 -4.3494 -1.1744 13 6 3.6835 -2.6303 -2.4162 14 6 3.8766 -3.1473 -3.6662 15 6 3.3432 -2.3681 -4.6652 16 6 2.7345 -1.2511 -4.2500 17 16 2.7939 -1.1195 -2.5500 18 6 4.3361 -3.2334 1.2649 19 6 3.0909 -3.3005 2.1515 20 6 3.4418 -3.9885 3.4722 21 6 4.5349 -3.1919 4.1875 22 6 5.7801 -3.1248 3.3009 23 6 6.2830 -4.5422 3.0198 24 6 5.1899 -5.3387 2.3045 25 6 3.9448 -5.4058 3.1911 26 6 4.8393 -4.6507 0.9842 27 6 5.4289 -2.4363 1.9798 28 1 -0.4850 0.8401 -0.0004 29 1 3.8746 -0.6806 0.8905 30 1 3.8752 -0.6796 -0.8895 31 1 4.3959 -4.0761 -3.8510 32 1 3.4113 -2.6373 -5.7090 33 1 2.2640 -0.5313 -4.9035 34 1 2.7323 -2.2907 2.3513 35 1 2.3123 -3.8683 1.6421 36 1 2.5548 -4.0359 4.1040 37 1 4.7846 -3.6818 5.1287 38 1 4.1766 -2.1822 4.3878 39 1 6.5589 -2.5577 3.8107 40 1 6.5329 -5.0323 3.9607 41 1 7.1702 -4.4943 2.3886 42 1 5.5483 -6.3483 2.1039 43 1 3.1660 -5.9733 2.6816 44 1 4.1952 -5.8958 4.1321 45 1 4.0607 -5.2186 0.4748 46 1 5.7264 -4.6029 0.3526 47 1 6.3160 -2.3886 1.3482 48 1 5.0703 -1.4266 2.1797 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095941678.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:22 Heat of formation + Delta-G solvation = 0.297120 kcal Electronic energy + Delta-G solvation = -30564.815200 eV Core-core repulsion = 26903.752902 eV Total energy + Delta-G solvation = -3661.062298 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 345.150 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.42471 -38.80880 -36.71112 -35.26899 -32.96039 -32.35141 -32.23450 -31.27998 -28.58008 -27.97088 -25.66181 -25.49782 -24.21928 -22.77642 -21.66608 -21.16641 -21.01726 -19.36527 -18.27960 -17.27325 -17.16672 -16.86374 -15.88173 -14.89258 -14.80334 -14.71999 -14.31887 -14.15385 -14.10454 -13.75165 -13.29704 -13.05188 -12.99258 -12.87516 -12.73575 -12.61023 -12.33067 -12.15640 -12.02956 -11.90882 -11.80089 -11.55959 -11.29411 -10.96025 -10.82669 -10.67443 -10.58952 -10.44761 -10.36697 -10.29441 -10.09664 -9.81843 -9.44460 -9.39968 -9.29844 -8.97611 -8.34870 -8.10068 -7.73752 -7.55138 -6.45755 -4.39152 1.36237 2.51448 2.97187 3.05305 3.11292 3.12287 3.16247 3.68759 3.99497 4.05721 4.77069 4.81120 4.87056 4.95619 5.27347 5.38882 5.45092 5.51421 5.53042 5.58669 5.62911 5.66189 5.69051 5.69787 5.79504 5.92903 6.02238 6.05361 6.07558 6.14478 6.16745 6.21678 6.22770 6.26901 6.37681 6.40642 6.42895 6.54907 6.56453 6.61869 6.64957 6.71815 6.89414 6.92835 6.98168 7.01991 7.11735 7.14880 7.38977 7.98065 8.24580 8.62495 8.91498 9.09621 10.64172 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.012000 B = 0.005663 C = 0.004345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2332.712471 B = 4943.399333 C = 6442.138747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.091 3.909 3 Si 0.844 3.156 4 H -0.262 1.262 5 H -0.276 1.276 6 H -0.258 1.258 7 C -0.523 4.523 8 H 0.091 0.909 9 C 0.192 3.808 10 N -0.584 5.584 11 C 0.592 3.408 12 O -0.554 6.554 13 C -0.290 4.290 14 C -0.083 4.083 15 C -0.168 4.168 16 C -0.331 4.331 17 S 0.368 5.632 18 C 0.188 3.812 19 C -0.111 4.111 20 C -0.084 4.084 21 C -0.107 4.107 22 C -0.080 4.080 23 C -0.106 4.106 24 C -0.097 4.097 25 C -0.107 4.107 26 C -0.087 4.087 27 C -0.119 4.119 28 H 0.271 0.729 29 H 0.049 0.951 30 H 0.033 0.967 31 H 0.135 0.865 32 H 0.118 0.882 33 H 0.145 0.855 34 H 0.082 0.918 35 H 0.064 0.936 36 H 0.068 0.932 37 H 0.057 0.943 38 H 0.062 0.938 39 H 0.066 0.934 40 H 0.056 0.944 41 H 0.058 0.942 42 H 0.065 0.935 43 H 0.059 0.941 44 H 0.054 0.946 45 H 0.075 0.925 46 H 0.081 0.919 47 H 0.060 0.940 48 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.468 -3.242 3.842 9.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.117 4.117 3 Si 0.669 3.331 4 H -0.187 1.187 5 H -0.201 1.201 6 H -0.182 1.182 7 C -0.567 4.567 8 H 0.109 0.891 9 C 0.068 3.932 10 N -0.312 5.312 11 C 0.381 3.619 12 O -0.436 6.436 13 C -0.411 4.411 14 C -0.117 4.117 15 C -0.199 4.199 16 C -0.468 4.468 17 S 0.647 5.353 18 C 0.104 3.896 19 C -0.149 4.149 20 C -0.103 4.103 21 C -0.145 4.145 22 C -0.099 4.099 23 C -0.143 4.143 24 C -0.116 4.116 25 C -0.144 4.144 26 C -0.125 4.125 27 C -0.157 4.157 28 H 0.082 0.918 29 H 0.066 0.934 30 H 0.050 0.950 31 H 0.153 0.847 32 H 0.136 0.864 33 H 0.163 0.837 34 H 0.100 0.900 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.076 0.924 38 H 0.081 0.919 39 H 0.085 0.915 40 H 0.074 0.926 41 H 0.077 0.923 42 H 0.084 0.916 43 H 0.078 0.922 44 H 0.073 0.927 45 H 0.094 0.906 46 H 0.099 0.901 47 H 0.079 0.921 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 8.000 -2.559 4.753 9.651 hybrid contribution 0.517 0.067 -1.331 1.430 sum 8.517 -2.492 3.422 9.511 Atomic orbital electron populations 1.69864 1.06080 1.27708 1.46490 1.24832 0.94702 0.98547 0.93647 0.87259 0.81228 0.84539 0.80036 1.18733 1.20127 1.18175 1.21410 0.88810 0.95750 1.50756 0.89143 1.20072 0.96289 0.79187 0.97624 1.47788 1.63791 1.14858 1.04791 1.17056 0.77865 0.84498 0.82441 1.90764 1.46485 1.20028 1.86333 1.24793 1.13376 1.05575 0.97378 1.20412 1.00547 1.00350 0.90422 1.19647 1.04345 0.96359 0.99589 1.26730 1.07269 1.03527 1.09319 1.85912 1.42614 1.15477 0.91343 1.20248 0.93935 0.92539 0.82903 1.21857 0.96739 1.02258 0.94068 1.21068 0.97599 0.94806 0.96809 1.21548 0.95178 1.00212 0.97517 1.21013 0.97189 0.96109 0.95599 1.21533 0.97846 0.95263 0.99689 1.21322 0.95104 0.98859 0.96281 1.21548 0.97499 0.96475 0.98922 1.22066 1.03072 0.93404 0.93945 1.21922 0.98474 0.99345 0.96000 0.91815 0.93365 0.94958 0.84725 0.86377 0.83729 0.89989 0.91730 0.91368 0.92421 0.91910 0.91542 0.92551 0.92307 0.91633 0.92179 0.92713 0.90642 0.90096 0.92084 0.91411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -22.65 13.96 55.43 0.77 -21.88 16 2 C 0.09 2.19 4.93 -17.82 -0.09 2.10 16 3 Si 0.84 17.85 26.91 -169.99 -4.57 13.28 16 4 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 5 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 6 H -0.26 -5.17 6.54 56.52 0.37 -4.80 16 7 C -0.52 -12.27 5.98 -34.44 -0.21 -12.48 16 8 H 0.09 2.43 8.06 -52.49 -0.42 2.00 16 9 C 0.19 4.00 3.10 -5.19 -0.02 3.99 16 10 N -0.58 -11.75 2.37 -161.74 -0.38 -12.13 16 11 C 0.59 12.63 7.49 -12.90 -0.10 12.53 16 12 O -0.55 -12.19 12.07 5.18 0.06 -12.13 16 13 C -0.29 -6.02 6.19 -36.79 -0.23 -6.25 16 14 C -0.08 -1.57 10.02 -40.44 -0.41 -1.98 16 15 C -0.17 -2.97 10.15 -41.42 -0.42 -3.39 16 16 C -0.33 -6.01 10.92 29.18 0.32 -5.70 16 17 S 0.37 7.48 15.03 -107.50 -1.62 5.87 16 18 C 0.19 3.31 0.85 -131.82 -0.11 3.20 16 19 C -0.11 -1.94 4.03 -26.74 -0.11 -2.05 16 20 C -0.08 -1.19 3.19 -90.62 -0.29 -1.48 16 21 C -0.11 -1.36 5.19 -26.73 -0.14 -1.50 16 22 C -0.08 -1.04 3.20 -90.59 -0.29 -1.33 16 23 C -0.11 -1.32 5.19 -26.73 -0.14 -1.46 16 24 C -0.10 -1.35 3.19 -90.64 -0.29 -1.64 16 25 C -0.11 -1.43 5.19 -26.73 -0.14 -1.57 16 26 C -0.09 -1.51 2.83 -26.75 -0.08 -1.58 16 27 C -0.12 -1.85 4.45 -26.71 -0.12 -1.97 16 28 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 29 H 0.05 0.99 5.44 -51.93 -0.28 0.70 16 30 H 0.03 0.69 4.37 -25.93 -0.11 0.58 16 31 H 0.13 2.40 8.06 -52.48 -0.42 1.97 16 32 H 0.12 1.76 8.06 -52.49 -0.42 1.34 16 33 H 0.14 2.31 8.06 -52.48 -0.42 1.88 16 34 H 0.08 1.57 7.15 -51.93 -0.37 1.20 16 35 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 36 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 37 H 0.06 0.65 8.14 -51.92 -0.42 0.22 16 38 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.08 1.48 6.80 -51.93 -0.35 1.13 16 46 H 0.08 1.52 6.57 -51.93 -0.34 1.18 16 47 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 48 H 0.07 1.08 6.62 -51.93 -0.34 0.74 16 LS Contribution 354.27 15.07 5.34 5.34 Total: -1.00 -25.41 354.27 -10.55 -35.97 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: -7.31 Total: 8.24 kcal Atomic # 6 Polarization: -19.72 SS G_CDS: -2.84 Total: -22.56 kcal Atomic # 7 Polarization: -34.40 SS G_CDS: 0.39 Total: -34.01 kcal Atomic # 8 Polarization: -12.19 SS G_CDS: 0.06 Total: -12.13 kcal Atomic # 14 Polarization: 17.85 SS G_CDS: -4.57 Total: 13.28 kcal Atomic # 16 Polarization: 7.48 SS G_CDS: -1.62 Total: 5.87 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -25.41 -10.55 -35.97 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095941678.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.263 kcal (2) G-P(sol) polarization free energy of solvation -25.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds