Wall clock time and date at job start Tue Mar 31 2020 05:13:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.35754 * 119.38817 * 2 1 4 4 C 1.39470 * 120.13277 * 179.72175 * 3 2 1 5 5 C 1.39342 * 118.95769 * 0.50182 * 4 3 2 6 6 C 1.47068 * 120.58342 * 179.77706 * 5 4 3 7 7 O 1.21659 * 120.00217 * 5.14677 * 6 5 4 8 8 N 1.34773 * 119.99712 * 185.14703 * 6 5 4 9 9 C 1.40068 * 120.00007 * 185.79068 * 8 6 5 10 10 C 1.38665 * 120.10315 * 24.82903 * 9 8 6 11 11 C 1.38250 * 120.01112 * 179.97438 * 10 9 8 12 12 C 1.38299 * 120.20852 * 359.97438 * 11 10 9 13 13 C 1.38210 * 120.20561 * 359.97438 * 12 11 10 14 14 C 1.38780 * 119.98511 * 0.02571 * 13 12 11 15 15 S 1.76201 * 120.09955 * 180.02562 * 14 13 12 16 16 C 1.81398 * 103.00244 * 359.97438 * 15 14 13 17 17 C 1.50700 * 109.47320 * 180.02562 * 16 15 14 18 18 H 1.08000 * 119.99773 * 0.02562 * 17 16 15 19 19 C 1.37879 * 120.00067 * 180.02562 * 17 16 15 20 20 N 1.31522 * 119.99795 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00066 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.46981 * 90.00039 * 21 19 17 23 23 H 1.48500 * 109.46725 * 210.00260 * 21 19 17 24 24 H 1.48507 * 109.46868 * 329.99768 * 21 19 17 25 25 C 1.41897 * 118.82846 * 359.50597 * 5 4 3 26 26 O 1.21883 * 120.10644 * 180.22304 * 25 5 4 27 27 N 1.34658 * 119.79049 * 0.24897 * 25 5 4 28 28 H 0.96996 * 119.46826 * 180.02562 * 27 25 5 29 29 H 1.09001 * 109.46955 * 270.01997 * 1 2 3 30 30 H 1.08999 * 109.46476 * 30.01824 * 1 2 3 31 31 H 1.08993 * 109.47135 * 150.01682 * 1 2 3 32 32 H 1.07998 * 119.93131 * 359.97438 * 3 2 1 33 33 H 1.07997 * 120.51892 * 180.28631 * 4 3 2 34 34 H 0.97006 * 120.00049 * 5.78893 * 8 6 5 35 35 H 1.08000 * 119.99077 * 359.95162 * 10 9 8 36 36 H 1.07994 * 119.89341 * 179.97438 * 11 10 9 37 37 H 1.08001 * 119.89453 * 180.02562 * 12 11 10 38 38 H 1.07999 * 120.00575 * 179.74973 * 13 12 11 39 39 H 1.08996 * 109.47227 * 300.00641 * 16 15 14 40 40 H 1.09005 * 109.46653 * 60.00136 * 16 15 14 41 41 H 0.96998 * 119.99517 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1732 1.1828 0.0000 4 6 3.5678 1.2010 0.0059 5 6 4.2583 -0.0093 0.0010 6 6 5.7288 -0.0319 0.0020 7 8 6.3531 1.0075 0.1016 8 7 6.3847 -1.2041 -0.1075 9 6 7.7796 -1.2402 0.0150 10 6 8.4408 -0.2527 0.7294 11 6 9.8176 -0.2905 0.8495 12 6 10.5398 -1.3116 0.2593 13 6 9.8896 -2.3010 -0.4538 14 6 8.5079 -2.2712 -0.5797 15 16 7.6758 -3.5314 -1.4876 16 6 9.0335 -4.5995 -2.0412 17 6 8.4754 -5.7447 -2.8463 18 1 7.4106 -5.8220 -3.0090 19 6 9.3243 -6.6938 -3.3752 20 7 10.6210 -6.5999 -3.1765 21 14 8.6326 -8.1129 -4.3737 22 1 8.5732 -7.7273 -5.8065 23 1 9.5087 -9.3017 -4.2169 24 1 7.2662 -8.4379 -3.8914 25 6 3.5175 -1.2196 0.0009 26 8 4.0977 -2.2915 0.0008 27 7 2.1715 -1.1802 0.0005 28 1 1.6699 -2.0104 0.0008 29 1 -0.3633 0.0004 1.0277 30 1 -0.3632 0.8898 -0.5141 31 1 -0.3633 -0.8901 -0.5135 32 1 1.6222 2.1117 -0.0004 33 1 4.1041 2.1384 0.0105 34 1 5.8908 -2.0229 -0.2710 35 1 7.8802 0.5463 1.1917 36 1 10.3306 0.4798 1.4060 37 1 11.6151 -1.3364 0.3568 38 1 10.4572 -3.0947 -0.9168 39 1 9.7210 -4.0223 -2.6594 40 1 9.5654 -4.9900 -1.1736 41 1 11.2182 -7.2678 -3.5483 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095953563.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:04 Heat of formation + Delta-G solvation = -15.078905 kcal Electronic energy + Delta-G solvation = -26296.318256 eV Core-core repulsion = 22460.641677 eV Total energy + Delta-G solvation = -3835.676579 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 344.098 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.81703 -39.96302 -37.93568 -37.74820 -34.36994 -34.05778 -33.18018 -32.17548 -30.60273 -29.61658 -28.50581 -27.83916 -24.24144 -23.77797 -23.27605 -22.59652 -22.00748 -20.63390 -18.78754 -17.88451 -17.62110 -16.70347 -16.37356 -16.21537 -16.12922 -16.10846 -15.01985 -14.92245 -14.79637 -14.43602 -14.20464 -14.10079 -13.74947 -13.59482 -13.30033 -12.88364 -12.85826 -12.66509 -12.56392 -12.30817 -12.12392 -12.03046 -11.62909 -11.13154 -10.90836 -10.77144 -10.70337 -10.42163 -10.20101 -9.94406 -9.62943 -9.60311 -9.07648 -8.97598 -8.57117 -8.46550 -7.77601 -6.41577 -6.21015 -4.25925 0.00863 1.39677 1.68480 1.84787 2.31833 2.56144 2.68153 3.25972 3.31371 3.36690 3.39170 3.53923 3.75234 3.77780 4.16868 4.28227 4.33002 4.34391 4.70154 4.75458 4.77022 4.83761 5.12814 5.16306 5.39244 5.45638 5.48523 5.63515 5.67893 5.78080 5.98064 6.01009 6.14665 6.37676 6.38472 6.65621 6.73348 6.90130 6.99878 7.04451 7.07392 7.44442 7.52194 7.72550 7.88198 7.96816 8.40065 8.75125 9.37261 10.90360 Molecular weight = 344.10amu Principal moments of inertia in cm(-1) A = 0.010601 B = 0.003170 C = 0.002484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2640.580809 B = 8829.425160 C =11270.389844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.195 3.805 3 C -0.246 4.246 4 C 0.069 3.931 5 C -0.280 4.280 6 C 0.576 3.424 7 O -0.537 6.537 8 N -0.646 5.646 9 C 0.152 3.848 10 C -0.121 4.121 11 C -0.123 4.123 12 C -0.121 4.121 13 C -0.115 4.115 14 C -0.097 4.097 15 S -0.161 6.161 16 C 0.073 3.927 17 C -0.516 4.516 18 H 0.068 0.932 19 C 0.067 3.933 20 N -0.890 5.890 21 Si 0.908 3.092 22 H -0.277 1.277 23 H -0.283 1.283 24 H -0.271 1.271 25 C 0.531 3.469 26 O -0.527 6.527 27 N -0.598 5.598 28 H 0.419 0.581 29 H 0.096 0.904 30 H 0.098 0.902 31 H 0.082 0.918 32 H 0.155 0.845 33 H 0.153 0.847 34 H 0.428 0.572 35 H 0.143 0.857 36 H 0.120 0.880 37 H 0.120 0.880 38 H 0.134 0.866 39 H 0.044 0.956 40 H 0.044 0.956 41 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.034 16.908 8.794 27.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.082 3.918 3 C -0.268 4.268 4 C 0.046 3.954 5 C -0.287 4.287 6 C 0.365 3.635 7 O -0.417 6.417 8 N -0.298 5.298 9 C 0.051 3.949 10 C -0.142 4.142 11 C -0.145 4.145 12 C -0.142 4.142 13 C -0.140 4.140 14 C -0.213 4.213 15 S 0.085 5.915 16 C -0.074 4.074 17 C -0.556 4.556 18 H 0.086 0.914 19 C -0.137 4.137 20 N -0.527 5.527 21 Si 0.735 3.265 22 H -0.203 1.203 23 H -0.209 1.209 24 H -0.195 1.195 25 C 0.331 3.669 26 O -0.407 6.407 27 N -0.228 5.228 28 H 0.258 0.742 29 H 0.114 0.886 30 H 0.117 0.883 31 H 0.101 0.899 32 H 0.173 0.827 33 H 0.170 0.830 34 H 0.277 0.723 35 H 0.160 0.840 36 H 0.138 0.862 37 H 0.138 0.862 38 H 0.152 0.848 39 H 0.062 0.938 40 H 0.062 0.938 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -20.250 16.641 8.527 27.562 hybrid contribution 0.660 -1.312 -0.409 1.524 sum -19.590 15.329 8.118 26.166 Atomic orbital electron populations 1.21208 0.87510 1.05450 1.04782 1.20851 0.95307 0.85905 0.89719 1.20479 0.94018 0.97219 1.15128 1.22016 0.93503 0.98284 0.81609 1.20865 0.94338 0.93255 1.20281 1.17437 0.85987 0.83562 0.76515 1.90728 1.67883 1.32410 1.50674 1.44100 1.05565 1.12089 1.68062 1.17306 0.82461 0.96386 0.98739 1.21213 0.94686 0.99159 0.99174 1.20912 0.93528 0.98800 1.01234 1.20999 0.99535 0.94805 0.98837 1.21207 0.92424 1.00032 1.00333 1.21837 0.96609 1.00160 1.02685 1.85317 1.20632 1.24058 1.61456 1.21364 0.91820 0.94878 0.99319 1.20630 0.94177 1.07491 1.33275 0.91386 1.24952 0.94716 0.97982 0.96050 1.69954 1.02380 1.35762 1.44653 0.86329 0.79056 0.80984 0.80172 1.20306 1.20905 1.19514 1.17043 0.80866 0.90549 0.78453 1.90811 1.66507 1.31095 1.52317 1.43519 1.08811 1.09470 1.61040 0.74189 0.88596 0.88330 0.89918 0.82743 0.82958 0.72320 0.83976 0.86247 0.86221 0.84780 0.93771 0.93754 0.92397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.09 10.06 36.01 0.36 0.27 16 2 C 0.19 0.92 6.80 -81.89 -0.56 0.37 16 3 C -0.25 -1.31 9.58 -40.01 -0.38 -1.69 16 4 C 0.07 0.62 9.70 -38.71 -0.38 0.24 16 5 C -0.28 -3.72 5.92 -104.51 -0.62 -4.33 16 6 C 0.58 9.97 7.54 -12.68 -0.10 9.87 16 7 O -0.54 -9.82 13.58 5.22 0.07 -9.75 16 8 N -0.65 -12.54 5.02 -10.78 -0.05 -12.60 16 9 C 0.15 3.12 6.44 -83.45 -0.54 2.58 16 10 C -0.12 -2.23 8.72 -39.42 -0.34 -2.57 16 11 C -0.12 -2.03 10.04 -39.55 -0.40 -2.43 16 12 C -0.12 -2.10 10.04 -39.57 -0.40 -2.50 16 13 C -0.12 -2.36 9.36 -39.39 -0.37 -2.72 16 14 C -0.10 -2.13 6.12 -38.90 -0.24 -2.37 16 15 S -0.16 -3.86 20.55 -107.50 -2.21 -6.07 16 16 C 0.07 1.96 4.09 36.01 0.15 2.11 16 17 C -0.52 -14.80 9.13 -34.44 -0.31 -15.12 16 18 H 0.07 1.94 7.71 -52.49 -0.40 1.54 16 19 C 0.07 1.91 5.46 -17.82 -0.10 1.81 16 20 N -0.89 -26.04 13.29 55.43 0.74 -25.30 16 21 Si 0.91 21.57 29.54 -169.99 -5.02 16.55 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 24 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 25 C 0.53 6.84 7.72 -14.91 -0.12 6.73 16 26 O -0.53 -8.93 14.58 5.02 0.07 -8.85 16 27 N -0.60 -4.51 5.22 -10.89 -0.06 -4.57 16 28 H 0.42 2.23 8.75 -40.82 -0.36 1.87 16 29 H 0.10 -0.03 8.14 -51.93 -0.42 -0.45 16 30 H 0.10 -0.06 8.06 -51.93 -0.42 -0.48 16 31 H 0.08 0.00 8.14 -51.93 -0.42 -0.42 16 32 H 0.15 0.32 8.06 -52.49 -0.42 -0.10 16 33 H 0.15 1.24 7.70 -52.49 -0.40 0.83 16 34 H 0.43 8.61 4.38 -40.82 -0.18 8.44 16 35 H 0.14 2.54 5.79 -52.49 -0.30 2.24 16 36 H 0.12 1.58 8.06 -52.49 -0.42 1.16 16 37 H 0.12 1.73 8.06 -52.49 -0.42 1.31 16 38 H 0.13 2.86 5.88 -52.49 -0.31 2.55 16 39 H 0.04 1.23 7.74 -51.93 -0.40 0.82 16 40 H 0.04 1.23 7.75 -51.92 -0.40 0.83 16 41 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 362.33 15.07 5.46 5.46 Total: -1.00 -36.24 362.33 -9.76 -46.00 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: -4.43 Total: 8.88 kcal Atomic # 6 Polarization: -5.42 SS G_CDS: -4.33 Total: -9.75 kcal Atomic # 7 Polarization: -43.10 SS G_CDS: 0.63 Total: -42.47 kcal Atomic # 8 Polarization: -18.75 SS G_CDS: 0.14 Total: -18.61 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 16 Polarization: -3.86 SS G_CDS: -2.21 Total: -6.07 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -36.24 -9.76 -46.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095953563.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.919 kcal (2) G-P(sol) polarization free energy of solvation -36.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds