Wall clock time and date at job start Tue Mar 31 2020 05:40:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46897 * 109.47130 * 2 1 4 4 C 1.46907 * 110.99681 * 300.94292 * 3 2 1 5 5 C 1.50692 * 109.46997 * 293.95152 * 4 3 2 6 6 H 1.08007 * 120.00521 * 0.02562 * 5 4 3 7 7 C 1.37880 * 119.99931 * 180.02562 * 5 4 3 8 8 N 1.31512 * 120.00281 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00025 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.46935 * 60.00214 * 9 7 5 11 11 H 1.48500 * 109.47188 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47274 * 300.00071 * 9 7 5 13 13 C 1.46900 * 111.00160 * 64.89402 * 3 2 1 14 14 C 1.50702 * 109.47148 * 75.62835 * 13 3 2 15 15 C 1.34695 * 126.08257 * 94.79347 * 14 13 3 16 16 O 1.34688 * 107.26518 * 179.97438 * 15 14 13 17 17 C 1.34452 * 107.68322 * 0.02562 * 16 15 14 18 18 C 1.47716 * 125.72361 * 179.97438 * 17 16 15 19 19 C 1.39735 * 119.99375 * 179.74476 * 18 17 16 20 20 C 1.37599 * 120.00691 * 179.76372 * 19 18 17 21 21 C 1.39788 * 119.99494 * 0.49485 * 20 19 18 22 22 C 1.47601 * 120.00889 * 179.73525 * 21 20 19 23 23 O 1.21485 * 119.99759 * 180.02562 * 22 21 20 24 24 O 1.34733 * 120.00016 * 0.02756 * 22 21 20 25 25 C 1.45199 * 117.00298 * 179.97438 * 24 22 21 26 26 C 1.39789 * 119.98309 * 359.76258 * 21 20 19 27 27 C 1.37600 * 119.99518 * 0.02562 * 26 21 20 28 28 N 1.31261 * 108.55070 * 359.75104 * 17 16 15 29 29 H 1.09000 * 109.47384 * 60.47277 * 1 2 3 30 30 H 1.09000 * 109.47278 * 180.47701 * 1 2 3 31 31 H 1.09003 * 109.47430 * 300.47138 * 1 2 3 32 32 H 1.09004 * 109.47400 * 119.99866 * 2 1 3 33 33 H 1.09000 * 109.47399 * 239.99821 * 2 1 3 34 34 H 1.08991 * 109.47153 * 53.95719 * 4 3 2 35 35 H 1.08999 * 109.46612 * 173.95525 * 4 3 2 36 36 H 0.96992 * 120.00323 * 179.97438 * 8 7 5 37 37 H 1.09000 * 109.47249 * 195.62955 * 13 3 2 38 38 H 1.08994 * 109.47230 * 315.62792 * 13 3 2 39 39 H 1.08007 * 126.36555 * 359.97438 * 15 14 13 40 40 H 1.08001 * 119.99336 * 0.03013 * 19 18 17 41 41 H 1.08006 * 120.00405 * 180.27353 * 20 19 18 42 42 H 1.09000 * 109.47585 * 179.97438 * 25 24 22 43 43 H 1.09003 * 109.47044 * 299.99975 * 25 24 22 44 44 H 1.09005 * 109.46668 * 59.99928 * 25 24 22 45 45 H 1.08001 * 120.00244 * 179.97438 * 26 21 20 46 46 H 1.08002 * 119.99768 * 180.02562 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5302 2.1163 -1.1763 5 6 2.1331 1.5229 -2.4234 6 1 2.8117 0.6858 -2.3497 7 6 1.8185 2.0485 -3.6586 8 7 0.9927 3.0681 -3.7485 9 14 2.5653 1.3125 -5.2046 10 1 2.1733 -0.1158 -5.3121 11 1 2.0707 2.0518 -6.3937 12 1 4.0452 1.4158 -5.1371 13 6 1.6465 2.0753 1.2419 14 6 2.5337 1.6034 2.3650 15 6 3.6648 2.2007 2.7870 16 8 4.1499 1.4643 3.8050 17 6 3.3143 0.4281 3.9939 18 6 3.4696 -0.6305 5.0124 19 6 2.5222 -1.6533 5.1069 20 6 2.6692 -2.6422 6.0523 21 6 3.7608 -2.6179 6.9251 22 6 3.9156 -3.6753 7.9432 23 8 4.8642 -3.6538 8.7020 24 8 3.0050 -4.6644 8.0311 25 6 3.2212 -5.6706 9.0554 26 6 4.7055 -1.5916 6.8339 27 6 4.5604 -0.6054 5.8854 28 7 2.3349 0.5176 3.1247 29 1 -0.3634 0.5065 -0.8942 30 1 -0.3634 -1.0276 0.0086 31 1 -0.3634 0.5211 0.8857 32 1 1.8934 -0.5138 0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 0.4441 2.0397 -1.2258 35 1 1.8172 3.1649 -1.0975 36 1 0.7717 3.4380 -4.6174 37 1 1.7677 3.1505 1.1104 38 1 0.6068 1.8536 1.4825 39 1 4.1014 3.1026 2.3839 40 1 1.6769 -1.6700 4.4350 41 1 1.9392 -3.4352 6.1224 42 1 2.4176 -6.4060 9.0178 43 1 4.1763 -6.1664 8.8818 44 1 3.2319 -5.1944 10.0358 45 1 5.5488 -1.5723 7.5083 46 1 5.2904 0.1873 5.8146 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096007807.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:03 Heat of formation + Delta-G solvation = -23.644279 kcal Electronic energy + Delta-G solvation = -28563.848313 eV Core-core repulsion = 24420.880535 eV Total energy + Delta-G solvation = -4142.967778 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.22997 -40.93639 -39.14609 -37.38802 -36.82573 -34.71533 -33.02758 -32.50323 -31.53339 -30.34926 -29.13074 -28.19310 -27.24466 -25.17481 -24.67148 -23.29228 -23.01653 -22.14271 -21.08376 -20.86854 -19.33125 -18.49639 -17.62820 -17.25810 -16.76393 -16.61676 -16.20050 -16.04371 -15.33064 -15.07243 -14.96656 -14.85113 -14.31857 -14.11688 -13.93015 -13.88377 -13.78366 -13.13709 -13.04748 -12.90375 -12.72919 -12.48440 -12.03930 -11.71281 -11.58618 -11.41584 -11.30211 -11.23411 -11.12853 -10.97719 -10.83985 -10.73207 -10.60810 -10.39920 -9.99304 -9.94311 -9.72281 -9.47572 -9.23904 -8.44465 -8.31007 -7.22066 -6.03472 -4.04129 -0.08547 0.94552 1.50724 2.17840 2.24132 2.61426 2.80792 3.33171 3.37156 3.40368 3.45178 3.78148 4.27059 4.42105 4.43249 4.50963 4.68733 4.76794 4.83948 4.89181 4.93717 5.08386 5.10077 5.21833 5.28251 5.33266 5.50498 5.60112 5.77609 5.81288 5.83604 5.88559 5.91927 5.98614 6.03905 6.06572 6.16476 6.25398 6.31673 6.37369 6.58753 6.73405 6.98737 7.27779 7.29741 7.41957 7.76475 7.79039 8.06695 8.19804 8.53062 9.02928 9.59750 11.07163 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.019308 B = 0.001918 C = 0.001847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.848721 B =14595.092175 C =15156.669998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.063 3.937 3 N -0.531 5.531 4 C 0.189 3.811 5 C -0.504 4.504 6 H 0.061 0.939 7 C 0.056 3.944 8 N -0.899 5.899 9 Si 0.897 3.103 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.122 3.878 14 C 0.018 3.982 15 C -0.051 4.051 16 O -0.197 6.197 17 C 0.196 3.804 18 C 0.038 3.962 19 C -0.089 4.089 20 C -0.059 4.059 21 C -0.122 4.122 22 C 0.510 3.490 23 O -0.505 6.505 24 O -0.354 6.354 25 C 0.037 3.963 26 C -0.053 4.053 27 C -0.107 4.107 28 N -0.445 5.445 29 H 0.068 0.932 30 H 0.046 0.954 31 H 0.045 0.955 32 H 0.058 0.942 33 H 0.076 0.924 34 H 0.002 0.998 35 H 0.028 0.972 36 H 0.261 0.739 37 H 0.085 0.915 38 H 0.052 0.948 39 H 0.221 0.779 40 H 0.150 0.850 41 H 0.147 0.853 42 H 0.104 0.896 43 H 0.064 0.936 44 H 0.064 0.936 45 H 0.144 0.856 46 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.448 -10.662 24.341 26.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.066 4.066 3 N -0.255 5.255 4 C 0.065 3.935 5 C -0.543 4.543 6 H 0.080 0.920 7 C -0.146 4.146 8 N -0.539 5.539 9 Si 0.725 3.275 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.202 1.202 13 C -0.006 4.006 14 C -0.104 4.104 15 C -0.122 4.122 16 O -0.083 6.083 17 C -0.006 4.006 18 C 0.036 3.964 19 C -0.108 4.108 20 C -0.077 4.077 21 C -0.124 4.124 22 C 0.356 3.644 23 O -0.394 6.394 24 O -0.270 6.270 25 C -0.057 4.057 26 C -0.071 4.071 27 C -0.126 4.126 28 N -0.175 5.175 29 H 0.087 0.913 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.077 0.923 33 H 0.094 0.906 34 H 0.020 0.980 35 H 0.046 0.954 36 H 0.071 0.929 37 H 0.103 0.897 38 H 0.070 0.930 39 H 0.237 0.763 40 H 0.167 0.833 41 H 0.165 0.835 42 H 0.122 0.878 43 H 0.083 0.917 44 H 0.083 0.917 45 H 0.162 0.838 46 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 3.691 -10.982 24.392 27.003 hybrid contribution 0.158 0.207 -0.841 0.880 sum 3.849 -10.774 23.551 26.183 Atomic orbital electron populations 1.22337 0.99276 1.00907 1.01857 1.21951 0.92273 0.90952 1.01397 1.62312 1.59640 1.02360 1.01203 1.19821 0.94253 0.93527 0.85947 1.21086 1.26920 1.16170 0.90112 0.92043 1.24963 0.95345 0.95150 0.99097 1.69935 1.35080 1.24148 1.24694 0.86581 0.79555 0.79130 0.82258 1.20312 1.21402 1.20229 1.20419 0.94737 0.98196 0.87297 1.21925 0.97314 0.92436 0.98775 1.25060 0.96987 0.99727 0.90392 1.84437 1.47108 1.32226 1.44559 1.23523 0.87584 0.90648 0.98861 1.17569 0.95863 0.91130 0.91797 1.21217 0.98943 0.92265 0.98349 1.21399 0.96072 0.97817 0.92457 1.19224 0.99022 0.95987 0.98147 1.21172 0.79811 0.80885 0.82573 1.90845 1.31163 1.75437 1.41997 1.86552 1.49913 1.35655 1.54898 1.23316 1.03273 0.89356 0.89757 1.21123 0.97647 0.91450 0.96861 1.21184 0.97450 0.99422 0.94573 1.70470 1.23240 1.18962 1.04841 0.91324 0.93529 0.93612 0.92314 0.90555 0.98016 0.95382 0.92906 0.89711 0.93043 0.76287 0.83257 0.83538 0.87776 0.91693 0.91729 0.83796 0.84010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.42 9.27 37.16 0.34 -3.08 16 2 C 0.06 1.25 5.75 -3.83 -0.02 1.22 16 3 N -0.53 -11.16 4.62 -237.52 -1.10 -12.26 16 4 C 0.19 4.71 4.44 -4.98 -0.02 4.69 16 5 C -0.50 -13.82 8.53 -34.44 -0.29 -14.12 16 6 H 0.06 1.69 7.10 -52.48 -0.37 1.32 16 7 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 8 N -0.90 -26.10 13.29 55.43 0.74 -25.36 16 9 Si 0.90 21.45 29.54 -169.99 -5.02 16.43 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 13 C 0.12 2.15 5.43 -4.97 -0.03 2.12 16 14 C 0.02 0.29 6.12 -82.90 -0.51 -0.22 16 15 C -0.05 -0.69 12.09 29.48 0.36 -0.34 16 16 O -0.20 -2.68 10.50 4.24 0.04 -2.64 16 17 C 0.20 2.72 7.89 -13.92 -0.11 2.61 16 18 C 0.04 0.42 5.88 -104.91 -0.62 -0.19 16 19 C -0.09 -0.88 9.67 -39.26 -0.38 -1.26 16 20 C -0.06 -0.50 9.60 -39.24 -0.38 -0.88 16 21 C -0.12 -1.13 5.88 -104.92 -0.62 -1.75 16 22 C 0.51 5.07 7.89 34.55 0.27 5.34 16 23 O -0.51 -6.09 16.12 -19.25 -0.31 -6.40 16 24 O -0.35 -2.95 9.80 -40.58 -0.40 -3.35 16 25 C 0.04 0.20 10.57 101.05 1.07 1.27 16 26 C -0.05 -0.47 9.58 -39.23 -0.38 -0.84 16 27 C -0.11 -1.00 9.69 -39.26 -0.38 -1.38 16 28 N -0.44 -7.00 10.06 -7.99 -0.08 -7.08 16 29 H 0.07 1.44 6.28 -51.93 -0.33 1.11 16 30 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.04 0.80 6.23 -51.93 -0.32 0.47 16 32 H 0.06 1.11 6.85 -51.93 -0.36 0.76 16 33 H 0.08 1.65 6.88 -51.93 -0.36 1.29 16 34 H 0.00 0.06 5.98 -51.93 -0.31 -0.25 16 35 H 0.03 0.74 7.83 -51.93 -0.41 0.33 16 36 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 37 H 0.08 1.39 7.74 -51.93 -0.40 0.99 16 38 H 0.05 0.91 5.87 -51.93 -0.30 0.60 16 39 H 0.22 2.29 8.06 -52.48 -0.42 1.87 16 40 H 0.15 1.49 7.82 -52.49 -0.41 1.08 16 41 H 0.15 0.96 7.60 -52.48 -0.40 0.56 16 42 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 43 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.14 1.13 7.64 -52.49 -0.40 0.72 16 46 H 0.14 1.13 7.89 -52.49 -0.41 0.72 16 LS Contribution 389.60 15.07 5.87 5.87 Total: -1.00 -32.29 389.60 -8.07 -40.36 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: -6.03 Total: -0.22 kcal Atomic # 6 Polarization: -3.56 SS G_CDS: -1.78 Total: -5.35 kcal Atomic # 7 Polarization: -44.26 SS G_CDS: -0.44 Total: -44.70 kcal Atomic # 8 Polarization: -11.73 SS G_CDS: -0.66 Total: -12.39 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -32.29 -8.07 -40.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096007807.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.715 kcal (2) G-P(sol) polarization free energy of solvation -32.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds