Wall clock time and date at job start Tue Mar 31 2020 06:11:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.46991 * 2 1 4 4 N 1.46500 * 109.46854 * 180.02562 * 3 2 1 5 5 C 1.36937 * 119.99666 * 274.51674 * 4 3 2 6 6 H 1.08000 * 119.99742 * 146.82176 * 5 4 3 7 7 C 1.38816 * 120.00143 * 326.81300 * 5 4 3 8 8 N 1.31617 * 119.99912 * 336.04068 * 7 5 4 9 9 Si 1.86799 * 119.99838 * 156.03932 * 7 5 4 10 10 H 1.48500 * 109.47043 * 59.99874 * 9 7 5 11 11 H 1.48500 * 109.47036 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.46990 * 300.00213 * 9 7 5 13 13 S 1.65600 * 120.00027 * 94.52241 * 4 3 2 14 14 O 1.42092 * 106.40527 * 23.53270 * 13 4 3 15 15 O 1.42102 * 106.40326 * 156.45853 * 13 4 3 16 16 C 1.76203 * 107.21599 * 269.99511 * 13 4 3 17 17 C 1.37970 * 119.87327 * 115.00205 * 16 13 4 18 18 C 1.38342 * 120.33937 * 180.02562 * 17 16 13 19 19 Cl 1.73595 * 120.13222 * 180.22809 * 18 17 16 20 20 C 1.38496 * 119.73564 * 0.20248 * 18 17 16 21 21 C 1.37694 * 119.97482 * 359.92865 * 20 18 17 22 22 C 1.38925 * 120.78630 * 359.43985 * 21 20 18 23 23 O 1.36164 * 111.21592 * 180.88205 * 22 21 20 24 24 C 1.43776 * 109.29177 * 341.20669 * 23 22 21 25 25 C 1.51639 * 132.17319 * 179.45981 * 21 20 18 26 26 H 1.08996 * 109.47134 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47009 * 299.99417 * 1 2 3 28 28 H 1.08997 * 109.47796 * 59.99925 * 1 2 3 29 29 H 1.09000 * 109.47009 * 240.00583 * 2 1 3 30 30 H 1.08995 * 109.47526 * 120.00542 * 2 1 3 31 31 H 1.09000 * 109.46768 * 60.00435 * 3 2 1 32 32 H 1.09000 * 109.46925 * 300.00079 * 3 2 1 33 33 H 0.97001 * 119.99770 * 179.97438 * 8 7 5 34 34 H 1.08000 * 119.82869 * 359.97438 * 17 16 13 35 35 H 1.08002 * 120.00867 * 179.91053 * 20 18 17 36 36 H 1.09002 * 110.75038 * 269.27460 * 24 23 22 37 37 H 1.08996 * 110.90632 * 145.99369 * 24 23 22 38 38 H 1.09012 * 110.93542 * 313.63422 * 25 21 20 39 39 H 1.08999 * 110.93616 * 77.27232 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1901 1.3489 1.1813 6 1 5.1380 0.8326 1.2166 7 6 3.6663 1.9178 2.3342 8 7 2.8087 2.9123 2.2461 9 14 4.1786 1.2718 4.0103 10 1 5.6472 1.4225 4.1712 11 1 3.4822 2.0423 5.0718 12 1 3.8133 -0.1634 4.1205 13 16 4.3324 1.5558 -1.4306 14 8 3.4504 2.1752 -2.3566 15 8 5.6155 2.0766 -1.1117 16 6 4.5930 -0.0864 -2.0138 17 6 3.9967 -0.5018 -3.1866 18 6 4.1943 -1.7891 -3.6531 19 17 3.4462 -2.3044 -5.1325 20 6 4.9918 -2.6650 -2.9355 21 6 5.5852 -2.2523 -1.7635 22 6 5.4043 -0.9580 -1.2923 23 8 6.0910 -0.7547 -0.1342 24 6 6.4137 -2.0255 0.4560 25 6 6.4831 -2.9651 -0.7710 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.8933 -0.5137 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6766 1.9564 -0.8900 33 1 2.4424 3.3096 3.0517 34 1 3.3718 0.1812 -3.7429 35 1 5.1479 -3.6714 -3.2949 36 1 5.6283 -2.3433 1.1418 37 1 7.3761 -1.9844 0.9658 38 1 6.0892 -3.9522 -0.5285 39 1 7.5026 -3.0371 -1.1500 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096009601.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:54 Heat of formation + Delta-G solvation = -77.422344 kcal Electronic energy + Delta-G solvation = -27472.907059 eV Core-core repulsion = 23534.375554 eV Total energy + Delta-G solvation = -3938.531505 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 345.063 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.12257 -37.80081 -36.24451 -36.15215 -35.92649 -34.65012 -32.86433 -32.56417 -30.83893 -30.01972 -29.29968 -25.82950 -23.85802 -23.62066 -22.60090 -22.01669 -20.59010 -18.54935 -17.73690 -17.34760 -16.89202 -16.55556 -16.13267 -15.96944 -15.18915 -14.66577 -14.44526 -13.99671 -13.90396 -13.54035 -13.36199 -13.32246 -13.05481 -12.86561 -12.50534 -11.97560 -11.94117 -11.77513 -11.71151 -11.55576 -11.45567 -11.12993 -11.08727 -10.96005 -10.86434 -10.73162 -10.57764 -10.55247 -10.35781 -10.08360 -9.97441 -9.68821 -9.25908 -8.99513 -8.11744 -7.66604 -6.21438 -3.87030 0.83509 1.13913 1.50196 2.08584 3.16441 3.22699 3.28089 3.29299 3.40106 4.14389 4.22831 4.44166 4.52538 4.70829 4.74187 4.94859 4.99650 5.09071 5.24802 5.39761 5.46298 5.61498 5.65006 5.73600 5.74867 5.80474 5.92700 6.00534 6.04987 6.12360 6.34806 6.38527 6.48657 6.63995 6.74246 6.92916 7.03031 7.36704 7.51447 7.84454 8.53153 9.06318 9.44394 10.80886 Molecular weight = 345.06amu Principal moments of inertia in cm(-1) A = 0.012003 B = 0.005483 C = 0.004725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2332.134432 B = 5105.438573 C = 5924.648728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.138 4.138 3 C 0.115 3.885 4 N -0.837 5.837 5 C -0.279 4.279 6 H 0.102 0.898 7 C 0.036 3.964 8 N -0.858 5.858 9 Si 0.912 3.088 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.276 1.276 13 S 2.632 3.368 14 O -0.996 6.996 15 O -0.960 6.960 16 C -0.665 4.665 17 C 0.015 3.985 18 C -0.091 4.091 19 Cl -0.069 7.069 20 C -0.020 4.020 21 C -0.192 4.192 22 C 0.222 3.778 23 O -0.269 6.269 24 C 0.046 3.954 25 C -0.105 4.105 26 H 0.043 0.957 27 H 0.054 0.946 28 H 0.050 0.950 29 H 0.042 0.958 30 H 0.065 0.935 31 H 0.119 0.881 32 H 0.059 0.941 33 H 0.267 0.733 34 H 0.156 0.844 35 H 0.136 0.864 36 H 0.087 0.913 37 H 0.112 0.888 38 H 0.094 0.906 39 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.682 -13.698 -5.260 14.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.177 4.177 3 C -0.012 4.012 4 N -0.669 5.669 5 C -0.415 4.415 6 H 0.120 0.880 7 C -0.170 4.170 8 N -0.498 5.498 9 Si 0.739 3.261 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.202 1.202 13 S 2.726 3.274 14 O -0.985 6.985 15 O -0.950 6.950 16 C -0.747 4.747 17 C -0.005 4.005 18 C -0.118 4.118 19 Cl -0.040 7.040 20 C -0.039 4.039 21 C -0.194 4.194 22 C 0.173 3.827 23 O -0.180 6.180 24 C -0.029 4.029 25 C -0.142 4.142 26 H 0.062 0.938 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.061 0.939 30 H 0.084 0.916 31 H 0.136 0.864 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.174 0.826 35 H 0.154 0.846 36 H 0.105 0.895 37 H 0.130 0.870 38 H 0.113 0.887 39 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 1.933 -12.694 -5.725 14.059 hybrid contribution 0.131 -1.334 0.608 1.472 sum 2.064 -14.029 -5.117 15.075 Atomic orbital electron populations 1.21676 0.96620 1.00414 1.01612 1.21944 0.94683 0.99883 1.01235 1.21482 0.80146 0.94621 1.04957 1.52601 1.11570 1.85573 1.17117 1.19324 1.06796 1.31573 0.83802 0.88031 1.25306 0.97899 0.94278 0.99553 1.69975 1.30814 1.19690 1.29351 0.86232 0.79045 0.78904 0.81918 1.19702 1.21056 1.20153 1.04939 0.74412 0.73311 0.74689 1.93405 1.66226 1.72952 1.65949 1.93472 1.42401 1.75486 1.83642 1.30611 1.09633 1.28510 1.05982 1.20602 0.93706 0.94067 0.92103 1.20593 1.03926 0.95410 0.91875 1.98347 1.81377 1.90865 1.33455 1.20184 0.92901 0.98994 0.91844 1.20740 1.04050 0.96061 0.98529 1.18879 0.86209 0.92245 0.85361 1.87129 1.67106 1.30581 1.33208 1.23995 1.03147 0.80398 0.95354 1.21806 0.99592 0.99773 0.93060 0.93754 0.92715 0.93105 0.93917 0.91632 0.86390 0.92284 0.92325 0.82633 0.84571 0.89467 0.86951 0.88739 0.88893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.30 9.91 37.16 0.37 -1.93 16 2 C -0.14 -2.61 6.24 -26.73 -0.17 -2.78 16 3 C 0.12 2.59 5.28 -4.04 -0.02 2.57 16 4 N -0.84 -20.45 2.85 -59.90 -0.17 -20.62 16 5 C -0.28 -7.14 8.88 -15.06 -0.13 -7.27 16 6 H 0.10 2.56 6.10 -52.49 -0.32 2.24 16 7 C 0.04 0.93 4.97 -17.43 -0.09 0.84 16 8 N -0.86 -22.71 11.27 55.49 0.63 -22.08 16 9 Si 0.91 19.62 29.62 -169.99 -5.03 14.58 16 10 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 11 H -0.29 -6.12 7.11 56.52 0.40 -5.72 16 12 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 13 S 2.63 62.78 5.55 -107.50 -0.60 62.18 16 14 O -1.00 -24.44 15.50 -57.17 -0.89 -25.33 16 15 O -0.96 -25.82 17.11 -57.17 -0.98 -26.80 16 16 C -0.67 -13.13 5.93 -39.31 -0.23 -13.36 16 17 C 0.01 0.26 9.31 -39.64 -0.37 -0.11 16 18 C -0.09 -1.33 6.33 -39.45 -0.25 -1.58 16 19 Cl -0.07 -0.88 28.97 -51.86 -1.50 -2.38 16 20 C -0.02 -0.27 9.82 -39.68 -0.39 -0.66 16 21 C -0.19 -2.75 6.27 -104.10 -0.65 -3.40 16 22 C 0.22 4.05 6.69 -38.96 -0.26 3.79 16 23 O -0.27 -4.95 9.24 -20.26 -0.19 -5.14 16 24 C 0.05 0.57 8.01 38.05 0.30 0.87 16 25 C -0.11 -1.10 7.11 -26.52 -0.19 -1.29 16 26 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 28 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 30 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 31 H 0.12 2.88 5.29 -51.93 -0.27 2.60 16 32 H 0.06 1.32 6.92 -51.93 -0.36 0.96 16 33 H 0.27 6.66 8.31 -40.82 -0.34 6.32 16 34 H 0.16 2.60 7.30 -52.49 -0.38 2.22 16 35 H 0.14 1.35 8.06 -52.49 -0.42 0.93 16 36 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 37 H 0.11 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.09 0.75 8.14 -51.92 -0.42 0.32 16 39 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 LS Contribution 351.44 15.07 5.30 5.30 Total: -1.00 -31.42 351.44 -10.21 -41.63 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -4.70 Total: 2.96 kcal Atomic # 6 Polarization: -22.24 SS G_CDS: -2.08 Total: -24.32 kcal Atomic # 7 Polarization: -43.16 SS G_CDS: 0.46 Total: -42.70 kcal Atomic # 8 Polarization: -55.21 SS G_CDS: -2.05 Total: -57.26 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -5.03 Total: 14.58 kcal Atomic # 16 Polarization: 62.78 SS G_CDS: -0.60 Total: 62.18 kcal Atomic # 17 Polarization: -0.88 SS G_CDS: -1.50 Total: -2.38 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.42 -10.21 -41.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096009601.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.790 kcal (2) G-P(sol) polarization free energy of solvation -31.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds