Wall clock time and date at job start Tue Mar 31 2020 06:12:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46498 * 109.47161 * 2 1 4 4 C 1.46498 * 119.99874 * 274.99798 * 3 2 1 5 5 C 1.50703 * 109.46907 * 275.00275 * 4 3 2 6 6 H 1.08001 * 120.00049 * 359.97438 * 5 4 3 7 7 C 1.37880 * 119.99988 * 180.02562 * 5 4 3 8 8 N 1.31508 * 120.00331 * 179.97438 * 7 5 4 9 9 Si 1.86803 * 119.99967 * 359.97438 * 7 5 4 10 10 H 1.48500 * 109.46986 * 89.99908 * 9 7 5 11 11 H 1.48493 * 109.47165 * 210.00277 * 9 7 5 12 12 H 1.48496 * 109.46962 * 330.00217 * 9 7 5 13 13 S 1.65595 * 119.99850 * 95.00088 * 3 2 1 14 14 O 1.42105 * 106.40149 * 203.53728 * 13 3 2 15 15 O 1.42098 * 106.40317 * 336.45602 * 13 3 2 16 16 C 1.76204 * 107.21987 * 89.99964 * 13 3 2 17 17 C 1.37972 * 119.87529 * 115.00019 * 16 13 3 18 18 C 1.38338 * 120.33619 * 180.02562 * 17 16 13 19 19 Cl 1.73604 * 120.13076 * 180.22188 * 18 17 16 20 20 C 1.38496 * 119.73942 * 0.20575 * 18 17 16 21 21 C 1.37696 * 119.97235 * 359.92858 * 20 18 17 22 22 C 1.38926 * 120.78914 * 359.43400 * 21 20 18 23 23 O 1.36157 * 111.21725 * 180.88647 * 22 21 20 24 24 C 1.43775 * 109.28969 * 341.21250 * 23 22 21 25 25 C 1.51641 * 132.17052 * 179.46910 * 21 20 18 26 26 H 1.09005 * 109.47081 * 300.00493 * 1 2 3 27 27 H 1.09003 * 109.46581 * 60.00015 * 1 2 3 28 28 H 1.08994 * 109.47597 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.46879 * 239.99339 * 2 1 3 30 30 H 1.09003 * 109.46581 * 119.99985 * 2 1 3 31 31 H 1.09001 * 109.47378 * 34.99890 * 4 3 2 32 32 H 1.09002 * 109.46925 * 155.00631 * 4 3 2 33 33 H 0.96995 * 120.00625 * 179.97438 * 8 7 5 34 34 H 1.07999 * 119.83071 * 359.97438 * 17 16 13 35 35 H 1.08001 * 120.01355 * 179.90592 * 20 18 17 36 36 H 1.09001 * 110.74563 * 269.26934 * 24 23 22 37 37 H 1.09008 * 110.90291 * 145.99621 * 24 23 22 38 38 H 1.09000 * 110.93250 * 313.62198 * 25 21 20 39 39 H 1.08994 * 110.94157 * 77.26058 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1583 2.1086 -1.2639 5 6 3.4949 1.7886 -1.8823 6 1 4.1724 1.1115 -1.3835 7 6 3.8531 2.3611 -3.0843 8 7 5.0196 2.0823 -3.6238 9 14 2.6815 3.5329 -3.9468 10 1 2.9452 4.9213 -3.4907 11 1 2.8867 3.4466 -5.4149 12 1 1.2811 3.1622 -3.6201 13 16 2.4122 2.1201 1.4287 14 8 2.3058 3.5186 1.1998 15 8 1.6868 1.4415 2.4447 16 6 4.1170 1.7940 1.7320 17 6 5.0247 2.8330 1.7399 18 6 6.3655 2.5878 1.9765 19 17 7.5021 3.8999 1.9910 20 6 6.7974 1.2914 2.2021 21 6 5.8928 0.2533 2.1916 22 6 4.5421 0.4893 1.9682 23 8 3.8249 -0.6670 2.0187 24 6 4.7130 -1.7846 1.8474 25 6 6.0559 -1.2412 2.3899 26 1 -0.3633 0.5139 0.8900 27 1 -0.3632 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 1.3618 1.8096 -1.9453 32 1 2.0923 3.1802 -1.0756 33 1 5.2715 2.4848 -4.4696 34 1 4.6869 3.8429 1.5597 35 1 7.8433 1.0947 2.3858 36 1 4.8010 -2.0498 0.7938 37 1 4.3780 -2.6409 2.4330 38 1 6.8943 -1.6222 1.8067 39 1 6.1766 -1.4833 3.4458 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096009899.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:16 Heat of formation + Delta-G solvation = -78.595034 kcal Electronic energy + Delta-G solvation = -27330.250407 eV Core-core repulsion = 23391.668050 eV Total energy + Delta-G solvation = -3938.582357 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 345.063 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.21985 -37.82683 -36.69310 -36.17351 -36.07549 -35.31643 -32.94695 -32.63318 -30.25737 -30.04469 -29.35700 -27.14598 -23.92923 -22.91509 -22.67191 -22.11871 -21.46517 -18.47161 -17.68636 -17.35104 -17.06001 -16.68633 -16.51469 -16.16710 -15.54013 -15.23018 -14.38359 -14.18585 -13.91121 -13.52828 -13.48351 -13.26711 -13.09678 -12.76177 -12.55267 -12.48365 -12.07691 -12.00104 -11.92482 -11.86623 -11.77372 -11.54660 -11.44428 -11.11780 -11.07318 -10.98067 -10.65230 -10.46108 -10.39815 -10.25879 -10.11190 -9.60340 -9.26518 -8.64148 -8.18707 -8.06856 -6.15183 -4.15661 0.76361 1.05364 1.16242 2.17493 3.01984 3.26303 3.30609 3.34343 3.36934 3.59413 4.17201 4.24281 4.35751 4.46155 4.69015 4.86597 4.90357 5.13747 5.19413 5.25028 5.29976 5.43091 5.54210 5.61415 5.70118 5.72992 5.78360 5.80316 6.01582 6.08622 6.09934 6.29011 6.30183 6.55404 6.63594 6.85360 6.90351 7.11493 7.38483 7.54004 8.40930 8.87436 9.45309 10.97324 Molecular weight = 345.06amu Principal moments of inertia in cm(-1) A = 0.008955 B = 0.006297 C = 0.004919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3125.827941 B = 4445.150089 C = 5691.082295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.123 3.877 3 N -0.971 5.971 4 C 0.212 3.788 5 C -0.541 4.541 6 H 0.078 0.922 7 C 0.077 3.923 8 N -0.893 5.893 9 Si 0.867 3.133 10 H -0.271 1.271 11 H -0.285 1.285 12 H -0.262 1.262 13 S 2.694 3.306 14 O -0.959 6.959 15 O -0.962 6.962 16 C -0.665 4.665 17 C 0.029 3.971 18 C -0.080 4.080 19 Cl -0.063 7.063 20 C -0.013 4.013 21 C -0.186 4.186 22 C 0.211 3.789 23 O -0.289 6.289 24 C 0.048 3.952 25 C -0.105 4.105 26 H 0.056 0.944 27 H 0.058 0.942 28 H 0.060 0.940 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.042 0.958 32 H 0.045 0.955 33 H 0.265 0.735 34 H 0.159 0.841 35 H 0.139 0.861 36 H 0.088 0.912 37 H 0.113 0.887 38 H 0.097 0.903 39 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.685 -6.675 11.508 13.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.003 4.003 3 N -0.810 5.810 4 C 0.089 3.911 5 C -0.580 4.580 6 H 0.096 0.904 7 C -0.126 4.126 8 N -0.531 5.531 9 Si 0.694 3.306 10 H -0.196 1.196 11 H -0.210 1.210 12 H -0.187 1.187 13 S 2.781 3.219 14 O -0.950 6.950 15 O -0.952 6.952 16 C -0.750 4.750 17 C 0.010 3.990 18 C -0.108 4.108 19 Cl -0.034 7.034 20 C -0.032 4.032 21 C -0.188 4.188 22 C 0.163 3.837 23 O -0.202 6.202 24 C -0.027 4.027 25 C -0.142 4.142 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.100 0.900 30 H 0.098 0.902 31 H 0.059 0.941 32 H 0.063 0.937 33 H 0.075 0.925 34 H 0.177 0.823 35 H 0.157 0.843 36 H 0.107 0.893 37 H 0.131 0.869 38 H 0.115 0.885 39 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 1.134 -6.109 11.891 13.417 hybrid contribution 0.751 0.344 -0.938 1.250 sum 1.885 -5.765 10.953 12.521 Atomic orbital electron populations 1.22218 0.96780 1.01618 1.02293 1.21196 0.93580 0.82189 1.03334 1.57144 1.77797 1.23477 1.22534 1.19659 0.98358 0.92284 0.80827 1.21410 1.00890 1.29254 1.06438 0.90432 1.24833 0.94954 0.95967 0.96843 1.69884 1.20496 1.43817 1.18867 0.86975 0.82205 0.82347 0.79100 1.19609 1.21045 1.18684 1.01948 0.73408 0.73536 0.72991 1.93533 1.85922 1.30030 1.85478 1.93552 1.69275 1.75632 1.56775 1.30168 1.28396 0.95879 1.20516 1.20560 0.90249 0.99131 0.89088 1.20577 0.90847 0.89287 1.10066 1.98356 1.60248 1.47522 1.97294 1.20239 0.99586 0.89440 0.93949 1.20633 0.93651 0.96063 1.08468 1.18769 0.90095 0.86559 0.88288 1.86913 1.34200 1.12730 1.86330 1.24001 0.87367 0.88388 1.02904 1.21779 0.99173 0.90160 1.03068 0.92445 0.92311 0.92064 0.90045 0.90217 0.94054 0.93722 0.92524 0.82342 0.84330 0.89349 0.86909 0.88478 0.88853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.58 10.24 37.16 0.38 -2.20 16 2 C 0.12 2.14 6.06 -4.04 -0.02 2.11 16 3 N -0.97 -19.93 2.77 -115.66 -0.32 -20.25 16 4 C 0.21 4.93 4.50 -5.19 -0.02 4.91 16 5 C -0.54 -14.40 9.94 -34.44 -0.34 -14.74 16 6 H 0.08 2.22 8.06 -52.49 -0.42 1.80 16 7 C 0.08 2.14 5.47 -17.82 -0.10 2.04 16 8 N -0.89 -26.12 13.96 55.43 0.77 -25.34 16 9 Si 0.87 20.73 27.47 -169.99 -4.67 16.06 16 10 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 12 H -0.26 -5.93 6.54 56.52 0.37 -5.56 16 13 S 2.69 55.18 5.54 -107.50 -0.60 54.59 16 14 O -0.96 -21.40 15.50 -57.17 -0.89 -22.29 16 15 O -0.96 -19.93 16.87 -57.17 -0.96 -20.89 16 16 C -0.66 -12.76 5.93 -39.31 -0.23 -12.99 16 17 C 0.03 0.54 9.31 -39.64 -0.37 0.17 16 18 C -0.08 -1.31 6.33 -39.45 -0.25 -1.56 16 19 Cl -0.06 -0.92 28.97 -51.86 -1.50 -2.43 16 20 C -0.01 -0.19 9.82 -39.68 -0.39 -0.58 16 21 C -0.19 -2.73 6.27 -104.10 -0.65 -3.38 16 22 C 0.21 3.65 6.69 -38.96 -0.26 3.39 16 23 O -0.29 -4.49 9.05 -20.24 -0.18 -4.68 16 24 C 0.05 0.51 8.01 38.05 0.30 0.82 16 25 C -0.10 -1.07 7.12 -26.53 -0.19 -1.26 16 26 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 29 H 0.08 1.41 8.11 -51.93 -0.42 0.99 16 30 H 0.08 1.31 5.55 -51.93 -0.29 1.02 16 31 H 0.04 0.93 7.17 -51.93 -0.37 0.56 16 32 H 0.04 1.07 6.34 -51.93 -0.33 0.74 16 33 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 34 H 0.16 2.84 7.30 -52.49 -0.38 2.46 16 35 H 0.14 1.55 8.06 -52.49 -0.42 1.12 16 36 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.11 0.82 8.14 -51.92 -0.42 0.40 16 38 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 352.44 15.07 5.31 5.31 Total: -1.00 -32.64 352.44 -9.95 -42.59 By element: Atomic # 1 Polarization: 5.35 SS G_CDS: -4.77 Total: 0.58 kcal Atomic # 6 Polarization: -21.11 SS G_CDS: -2.15 Total: -23.26 kcal Atomic # 7 Polarization: -46.04 SS G_CDS: 0.45 Total: -45.59 kcal Atomic # 8 Polarization: -45.82 SS G_CDS: -2.03 Total: -47.86 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -4.67 Total: 16.06 kcal Atomic # 16 Polarization: 55.18 SS G_CDS: -0.60 Total: 54.59 kcal Atomic # 17 Polarization: -0.92 SS G_CDS: -1.50 Total: -2.43 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.64 -9.95 -42.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096009899.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.009 kcal (2) G-P(sol) polarization free energy of solvation -32.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds