Wall clock time and date at job start Tue Mar 31 2020 06:18:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35960 * 117.00187 * 2 1 4 4 C 1.38078 * 119.99786 * 0.23366 * 3 2 1 5 5 C 1.39982 * 119.83353 * 180.27729 * 4 3 2 6 6 C 1.46972 * 120.07426 * 179.76604 * 5 4 3 7 7 C 1.35024 * 120.00253 * 317.88916 * 6 5 4 8 8 C 1.46242 * 119.99937 * 345.84679 * 7 6 5 9 9 O 1.21758 * 119.99729 * 352.69985 * 8 7 6 10 10 N 1.34775 * 119.99715 * 172.70356 * 8 7 6 11 11 C 1.40637 * 119.99440 * 184.47595 * 10 8 7 12 12 C 1.38814 * 122.63501 * 326.52719 * 11 10 8 13 13 C 1.33358 * 114.89635 * 180.02562 * 12 11 10 14 14 S 1.75854 * 109.71536 * 359.73486 * 13 12 11 15 15 C 1.33852 * 122.62426 * 146.55389 * 11 10 8 16 16 C 1.40022 * 119.84240 * 359.48786 * 5 4 3 17 17 C 1.37646 * 120.00492 * 0.25912 * 16 5 4 18 18 C 1.39057 * 120.15580 * 359.97438 * 17 16 5 19 19 O 1.35619 * 119.91764 * 180.02562 * 18 17 16 20 20 C 1.34760 * 116.99815 * 6.37763 * 19 18 17 21 21 H 1.07997 * 120.00349 * 5.49781 * 20 19 18 22 22 C 1.38709 * 119.99660 * 185.50246 * 20 19 18 23 23 N 1.31520 * 119.99975 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 120.00016 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47060 * 0.02562 * 24 22 20 26 26 H 1.48497 * 109.47051 * 119.99813 * 24 22 20 27 27 H 1.48495 * 109.47240 * 239.99934 * 24 22 20 28 28 H 1.09003 * 109.47012 * 300.00173 * 1 2 3 29 29 H 1.09006 * 109.46814 * 59.99766 * 1 2 3 30 30 H 1.09000 * 109.47729 * 179.97438 * 1 2 3 31 31 H 1.07993 * 120.08610 * 0.02562 * 4 3 2 32 32 H 1.08000 * 119.99661 * 137.88593 * 6 5 4 33 33 H 1.08001 * 120.00009 * 165.84142 * 7 6 5 34 34 H 0.96995 * 120.00333 * 4.48366 * 10 8 7 35 35 H 1.08007 * 122.54645 * 359.97438 * 12 11 10 36 36 H 1.08003 * 125.13924 * 180.02562 * 13 12 11 37 37 H 1.07995 * 125.20058 * 359.97438 * 15 11 10 38 38 H 1.08006 * 119.99735 * 180.23324 * 16 5 4 39 39 H 1.08003 * 119.92157 * 180.02562 * 17 16 5 40 40 H 0.97007 * 120.00032 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2942 2.3694 0.0049 5 6 1.9333 3.6148 -0.0010 6 6 1.1380 4.8507 -0.0011 7 6 0.0400 4.9471 -0.7810 8 6 -0.1902 3.9690 -1.8436 9 8 0.6689 3.1493 -2.1130 10 7 -1.3532 3.9752 -2.5247 11 6 -1.6131 2.9774 -3.4811 12 6 -0.6147 2.4092 -4.2604 13 6 -1.0336 1.4777 -5.1179 14 16 -2.7729 1.2685 -4.9636 15 6 -2.8428 2.5016 -3.7117 16 6 3.3320 3.6802 -0.0010 17 6 4.0753 2.5217 -0.0005 18 6 3.4405 1.2845 0.0004 19 8 4.1775 0.1461 0.0014 20 6 5.5117 0.2812 0.1347 21 1 5.9397 1.2546 0.3234 22 6 6.3352 -0.8300 0.0295 23 7 5.8140 -2.0154 -0.2009 24 14 8.1847 -0.6427 0.2137 25 1 8.5152 0.7830 0.4654 26 1 8.6546 -1.4682 1.3551 27 1 8.8544 -1.0941 -1.0324 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 0.2157 2.3145 0.0091 32 1 1.4318 5.6819 0.6228 33 1 -0.6683 5.7463 -0.6200 34 1 -2.0108 4.6678 -2.3553 35 1 0.4223 2.6999 -4.1789 36 1 -0.3998 0.9310 -5.8004 37 1 -3.7399 2.8226 -3.2034 38 1 3.8277 4.6398 -0.0017 39 1 5.1540 2.5737 -0.0001 40 1 6.3899 -2.7925 -0.2741 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096035069.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:45 Heat of formation + Delta-G solvation = 5.625483 kcal Electronic energy + Delta-G solvation = -27377.869891 eV Core-core repulsion = 23445.372459 eV Total energy + Delta-G solvation = -3932.497431 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.087 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.38206 -39.40213 -37.66766 -37.42947 -36.03022 -33.76672 -32.97422 -32.12852 -29.41271 -29.29392 -28.29342 -26.60226 -25.46950 -24.34432 -22.94034 -21.58215 -21.28025 -19.62928 -19.25420 -18.03645 -17.82376 -17.69009 -16.65477 -16.19350 -15.92066 -15.25114 -15.08265 -14.77066 -14.50859 -14.33718 -13.91058 -13.61586 -13.48117 -13.37406 -13.28792 -12.95587 -12.93242 -12.80167 -12.49245 -12.16567 -11.69781 -11.56486 -11.29719 -11.05455 -10.96659 -10.91449 -10.59400 -10.45833 -10.33052 -10.20266 -9.60401 -9.48112 -9.23132 -8.77016 -8.71030 -7.98699 -7.54812 -6.76065 -6.45624 -3.97903 0.85945 1.14810 1.57800 1.88544 2.36846 2.51015 2.73952 3.13764 3.14294 3.20065 3.32080 3.56483 3.95805 4.14222 4.60525 4.79055 4.99790 5.07518 5.12705 5.20476 5.28371 5.45797 5.49257 5.60292 5.68559 5.75353 5.78108 5.84765 5.94575 6.08889 6.18256 6.21828 6.29573 6.43985 6.52885 6.67232 6.70687 7.01573 7.16342 7.25651 7.37763 7.48149 7.68814 7.95993 8.28736 8.35141 8.98438 9.71306 10.71355 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.012940 B = 0.003170 C = 0.002814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2163.349587 B = 8830.618156 C = 9947.797475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.304 6.304 3 C 0.048 3.952 4 C -0.086 4.086 5 C -0.160 4.160 6 C 0.036 3.964 7 C -0.271 4.271 8 C 0.539 3.461 9 O -0.491 6.491 10 N -0.669 5.669 11 C 0.151 3.849 12 C -0.126 4.126 13 C -0.200 4.200 14 S 0.101 5.899 15 C -0.269 4.269 16 C -0.062 4.062 17 C -0.229 4.229 18 C 0.153 3.847 19 O -0.156 6.156 20 C -0.389 4.389 21 H 0.095 0.905 22 C 0.039 3.961 23 N -0.851 5.851 24 Si 0.942 3.058 25 H -0.265 1.265 26 H -0.275 1.275 27 H -0.275 1.275 28 H 0.041 0.959 29 H 0.045 0.955 30 H 0.089 0.911 31 H 0.109 0.891 32 H 0.126 0.874 33 H 0.124 0.876 34 H 0.406 0.594 35 H 0.158 0.842 36 H 0.167 0.833 37 H 0.163 0.837 38 H 0.109 0.891 39 H 0.133 0.867 40 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.246 12.662 -4.435 21.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.218 6.218 3 C 0.003 3.997 4 C -0.106 4.106 5 C -0.162 4.162 6 C 0.016 3.984 7 C -0.293 4.293 8 C 0.330 3.670 9 O -0.365 6.365 10 N -0.317 5.317 11 C 0.044 3.956 12 C -0.157 4.157 13 C -0.335 4.335 14 S 0.361 5.639 15 C -0.408 4.408 16 C -0.081 4.081 17 C -0.249 4.249 18 C 0.097 3.903 19 O -0.058 6.058 20 C -0.465 4.465 21 H 0.112 0.888 22 C -0.166 4.166 23 N -0.484 5.484 24 Si 0.767 3.233 25 H -0.190 1.190 26 H -0.201 1.201 27 H -0.201 1.201 28 H 0.059 0.941 29 H 0.063 0.937 30 H 0.107 0.893 31 H 0.127 0.873 32 H 0.144 0.856 33 H 0.142 0.858 34 H 0.242 0.758 35 H 0.175 0.825 36 H 0.185 0.815 37 H 0.181 0.819 38 H 0.127 0.873 39 H 0.151 0.849 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -16.516 10.455 -5.333 20.261 hybrid contribution 1.211 1.619 0.759 2.160 sum -15.305 12.074 -4.573 20.024 Atomic orbital electron populations 1.22816 0.80629 1.02577 1.00027 1.86205 1.19172 1.26472 1.89941 1.17959 0.89295 0.84468 1.07970 1.20520 0.97505 0.90698 1.01832 1.18041 0.92780 0.91370 1.13976 1.22352 0.90348 0.94608 0.91075 1.22475 1.02614 1.03220 1.00951 1.18654 0.81062 0.84613 0.82718 1.91014 1.42054 1.37555 1.65924 1.43498 1.20549 1.28676 1.38948 1.16774 0.92482 0.93628 0.92691 1.20304 1.01765 0.98466 0.95176 1.25549 0.97584 1.04558 1.05842 1.84085 1.05002 1.38223 1.36561 1.25093 1.00829 1.06043 1.08789 1.20698 0.92171 0.97110 0.98109 1.20732 1.00390 0.90850 1.12919 1.18846 0.88260 0.87599 0.95582 1.84015 1.19591 1.25673 1.76476 1.21489 0.78813 0.96332 1.49826 0.88797 1.25356 1.00496 0.94316 0.96448 1.70067 1.36074 0.98726 1.43564 0.85629 0.80475 0.78913 0.78311 1.18961 1.20080 1.20081 0.94064 0.93660 0.89292 0.87283 0.85636 0.85785 0.75842 0.82507 0.81511 0.81926 0.87275 0.84905 0.91935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.62 9.81 101.05 0.99 1.61 16 2 O -0.30 -7.22 10.28 -34.23 -0.35 -7.57 16 3 C 0.05 1.14 6.70 -39.13 -0.26 0.87 16 4 C -0.09 -1.72 5.70 -38.99 -0.22 -1.94 16 5 C -0.16 -2.89 4.51 -105.04 -0.47 -3.37 16 6 C 0.04 0.47 9.80 -37.19 -0.36 0.11 16 7 C -0.27 -3.20 9.86 -37.51 -0.37 -3.57 16 8 C 0.54 7.66 6.60 -13.05 -0.09 7.57 16 9 O -0.49 -9.14 10.10 5.14 0.05 -9.09 16 10 N -0.67 -7.53 5.41 -12.13 -0.07 -7.60 16 11 C 0.15 1.89 6.27 -85.14 -0.53 1.36 16 12 C -0.13 -1.78 8.86 -41.07 -0.36 -2.15 16 13 C -0.20 -2.44 11.22 29.03 0.33 -2.11 16 14 S 0.10 1.04 23.33 -107.50 -2.51 -1.47 16 15 C -0.27 -2.83 11.19 29.19 0.33 -2.50 16 16 C -0.06 -1.18 9.78 -39.13 -0.38 -1.56 16 17 C -0.23 -5.16 9.10 -39.49 -0.36 -5.52 16 18 C 0.15 3.95 6.67 -38.76 -0.26 3.69 16 19 O -0.16 -4.67 9.52 -13.96 -0.13 -4.80 16 20 C -0.39 -11.08 9.43 30.91 0.29 -10.79 16 21 H 0.09 2.45 5.29 -52.49 -0.28 2.17 16 22 C 0.04 1.10 5.49 -17.51 -0.10 1.00 16 23 N -0.85 -25.43 13.67 55.48 0.76 -24.67 16 24 Si 0.94 20.63 29.55 -169.99 -5.02 15.61 16 25 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 26 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 27 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 28 H 0.04 0.64 7.65 -51.93 -0.40 0.24 16 29 H 0.04 0.78 7.67 -51.93 -0.40 0.38 16 30 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 31 H 0.11 2.00 5.27 -52.49 -0.28 1.72 16 32 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 33 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 34 H 0.41 3.06 8.81 -40.82 -0.36 2.71 16 35 H 0.16 2.57 6.53 -52.48 -0.34 2.23 16 36 H 0.17 1.76 8.06 -52.48 -0.42 1.33 16 37 H 0.16 1.30 8.06 -52.49 -0.42 0.87 16 38 H 0.11 1.69 8.06 -52.48 -0.42 1.27 16 39 H 0.13 2.93 5.70 -52.48 -0.30 2.63 16 40 H 0.27 7.35 8.31 -40.82 -0.34 7.02 16 LS Contribution 357.84 15.07 5.39 5.39 Total: -1.00 -34.99 357.84 -7.74 -42.73 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: -4.02 Total: 8.75 kcal Atomic # 6 Polarization: -15.45 SS G_CDS: -1.84 Total: -17.29 kcal Atomic # 7 Polarization: -32.96 SS G_CDS: 0.69 Total: -32.27 kcal Atomic # 8 Polarization: -21.03 SS G_CDS: -0.43 Total: -21.46 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Atomic # 16 Polarization: 1.04 SS G_CDS: -2.51 Total: -1.47 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -34.99 -7.74 -42.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096035069.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.358 kcal (2) G-P(sol) polarization free energy of solvation -34.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds