Wall clock time and date at job start Tue Mar 31 2020 06:59:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 S 1.81401 * 109.47166 * 2 1 4 4 O 1.42100 * 110.54241 * 68.37024 * 3 2 1 5 5 O 1.42091 * 110.54131 * 291.62327 * 3 2 1 6 6 N 1.65598 * 104.44561 * 179.97438 * 3 2 1 7 7 C 1.47001 * 120.62842 * 270.01694 * 6 3 2 8 8 C 1.53180 * 108.73357 * 126.40459 * 7 6 3 9 9 C 1.53117 * 109.33775 * 54.72986 * 8 7 6 10 10 C 1.53111 * 109.41111 * 298.51331 * 9 8 7 11 11 C 1.46920 * 120.63886 * 90.00416 * 6 3 2 12 12 C 1.50322 * 109.52186 * 58.61356 * 9 8 7 13 13 O 1.21288 * 118.62061 * 282.50709 * 12 9 8 14 14 N 1.33692 * 122.75640 * 102.51663 * 12 9 8 15 15 C 1.37102 * 118.51311 * 181.73068 * 14 12 9 16 16 H 1.08000 * 119.99936 * 21.59556 * 15 14 12 17 17 C 1.38948 * 120.00086 * 201.58786 * 15 14 12 18 18 N 1.31407 * 120.00002 * 16.49975 * 17 15 14 19 19 Si 1.86803 * 120.00002 * 196.49941 * 17 15 14 20 20 H 1.48501 * 109.47367 * 94.97671 * 19 17 15 21 21 H 1.48500 * 109.46881 * 214.98029 * 19 17 15 22 22 H 1.48503 * 109.46866 * 334.97496 * 19 17 15 23 23 C 1.46009 * 122.97324 * 1.71363 * 14 12 9 24 24 C 1.52981 * 110.03529 * 341.99630 * 23 14 12 25 25 N 1.46998 * 109.23556 * 178.94180 * 9 8 7 26 26 C 1.46892 * 111.00253 * 167.11992 * 25 9 8 27 27 H 1.08994 * 109.47119 * 300.00394 * 1 2 3 28 28 H 1.09004 * 109.46555 * 60.00430 * 1 2 3 29 29 H 1.08991 * 109.47360 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47119 * 239.99606 * 2 1 3 31 31 H 1.09004 * 109.46555 * 119.99570 * 2 1 3 32 32 H 1.08996 * 109.62793 * 6.61968 * 7 6 3 33 33 H 1.08995 * 109.58470 * 246.16900 * 7 6 3 34 34 H 1.08997 * 109.49769 * 294.76037 * 8 7 6 35 35 H 1.09004 * 109.49253 * 174.69092 * 8 7 6 36 36 H 1.08999 * 109.49410 * 181.39112 * 10 9 8 37 37 H 1.08999 * 109.49912 * 301.45352 * 10 9 8 38 38 H 1.09005 * 109.58620 * 113.80156 * 11 6 3 39 39 H 1.08997 * 109.58847 * 353.38395 * 11 6 3 40 40 H 0.96998 * 120.00333 * 179.97438 * 18 17 15 41 41 H 1.09004 * 109.37292 * 102.16939 * 23 14 12 42 42 H 1.08989 * 109.37807 * 221.81787 * 23 14 12 43 43 H 1.09005 * 109.59347 * 169.94815 * 24 23 14 44 44 H 1.09000 * 109.59503 * 290.40529 * 24 23 14 45 45 H 1.09001 * 109.47585 * 59.99880 * 26 25 9 46 46 H 1.09005 * 109.47550 * 179.97438 * 26 25 9 47 47 H 1.09006 * 109.47104 * 299.99766 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 16 2.1348 1.7103 0.0000 4 8 1.8385 2.3439 1.2369 5 8 1.8387 2.3438 -1.2369 6 7 3.7844 1.5652 0.0007 7 6 4.5299 1.4994 1.2660 8 6 5.4152 0.2495 1.2509 9 6 6.3004 0.2702 0.0017 10 6 5.4167 0.2500 -1.2485 11 6 4.5308 1.4995 -1.2631 12 6 7.1420 1.5157 0.0030 13 8 6.6261 2.5658 -0.3168 14 7 8.4353 1.5145 0.3416 15 6 9.1115 2.7072 0.3471 16 1 8.5672 3.6362 0.4303 17 6 10.4973 2.7206 0.2458 18 7 11.1357 1.6519 -0.1751 19 14 11.4527 4.2579 0.7078 20 1 11.9104 4.1515 2.1165 21 1 12.6303 4.3962 -0.1862 22 1 10.5768 5.4480 0.5604 23 6 9.1601 0.3006 0.7063 24 6 8.1730 -0.8095 1.0715 25 7 7.1670 -0.9172 0.0024 26 6 7.8075 -1.1023 -1.3064 27 1 -0.3633 0.5139 0.8899 28 1 -0.3632 0.5138 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 3.8308 1.4419 2.1002 33 1 5.1532 2.3875 1.3694 34 1 4.7871 -0.6412 1.2370 35 1 6.0434 0.2379 2.1417 36 1 6.0459 0.2397 -2.1385 37 1 4.7894 -0.6413 -1.2363 38 1 5.1539 2.3880 -1.3660 39 1 3.8320 1.4421 -2.0976 40 1 12.1030 1.6614 -0.2462 41 1 9.7719 -0.0221 -0.1363 42 1 9.8046 0.5071 1.5606 43 1 8.7061 -1.7554 1.1684 44 1 7.6814 -0.5662 2.0134 45 1 8.4137 -0.2275 -1.5414 46 1 8.4432 -1.9874 -1.2780 47 1 7.0412 -1.2294 -2.0712 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096050097.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:54 Heat of formation + Delta-G solvation = -60.307898 kcal Electronic energy + Delta-G solvation = -31509.488237 eV Core-core repulsion = 27434.948646 eV Total energy + Delta-G solvation = -4074.539591 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.72130 -37.22995 -37.04019 -36.33720 -35.82338 -34.43917 -33.27816 -31.74019 -31.12675 -30.63506 -28.44598 -26.10707 -25.34148 -24.24838 -23.21673 -22.57236 -21.51313 -21.05901 -18.85672 -18.06203 -17.41097 -16.87732 -16.31458 -16.23862 -16.05694 -15.09597 -15.00889 -14.74578 -14.62293 -14.55232 -14.04454 -13.88973 -13.80312 -13.39331 -13.05588 -12.73056 -12.64821 -12.56405 -12.46606 -12.21310 -11.98524 -11.95070 -11.83472 -11.74009 -11.70655 -11.50539 -11.32005 -11.05458 -10.98322 -10.79649 -10.77953 -10.56673 -10.46468 -10.32239 -10.25120 -10.04922 -9.13365 -8.98179 -8.41812 -7.75344 -7.47797 -6.35164 -3.97375 0.33084 2.77882 3.10066 3.21037 3.26678 3.77132 3.92024 3.99929 4.15087 4.22683 4.46891 4.67933 4.73503 4.86659 4.94349 4.98315 5.09687 5.30970 5.34946 5.40972 5.49483 5.52114 5.62692 5.66998 5.68846 5.76990 5.77580 5.82861 5.95314 5.98988 6.03669 6.12650 6.20967 6.25826 6.38019 6.49705 6.55274 6.67206 6.85045 6.88966 7.14270 7.31469 7.38249 7.51492 8.10015 8.38947 9.12551 9.38551 9.89137 10.61539 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.018728 B = 0.003836 C = 0.003470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.724242 B = 7297.209632 C = 8068.046321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.639 4.639 3 S 2.607 3.393 4 O -0.959 6.959 5 O -0.957 6.957 6 N -0.983 5.983 7 C 0.124 3.876 8 C -0.110 4.110 9 C 0.107 3.893 10 C -0.109 4.109 11 C 0.106 3.894 12 C 0.425 3.575 13 O -0.578 6.578 14 N -0.432 5.432 15 C -0.310 4.310 16 H 0.102 0.898 17 C 0.033 3.967 18 N -0.880 5.880 19 Si 0.924 3.076 20 H -0.278 1.278 21 H -0.284 1.284 22 H -0.268 1.268 23 C 0.098 3.902 24 C 0.023 3.977 25 N -0.527 5.527 26 C 0.012 3.988 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.078 0.922 30 H 0.130 0.870 31 H 0.129 0.871 32 H 0.083 0.917 33 H 0.090 0.910 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.068 0.932 38 H 0.126 0.874 39 H 0.075 0.925 40 H 0.267 0.733 41 H 0.093 0.907 42 H 0.065 0.935 43 H 0.083 0.917 44 H 0.073 0.927 45 H 0.047 0.953 46 H 0.064 0.936 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.911 -9.829 1.147 15.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.767 4.767 3 S 2.699 3.301 4 O -0.950 6.950 5 O -0.947 6.947 6 N -0.821 5.821 7 C -0.002 4.002 8 C -0.150 4.150 9 C 0.013 3.987 10 C -0.148 4.148 11 C -0.019 4.019 12 C 0.212 3.788 13 O -0.463 6.463 14 N -0.149 5.149 15 C -0.438 4.438 16 H 0.120 0.880 17 C -0.170 4.170 18 N -0.520 5.520 19 Si 0.751 3.249 20 H -0.205 1.205 21 H -0.210 1.210 22 H -0.193 1.193 23 C -0.027 4.027 24 C -0.105 4.105 25 N -0.250 5.250 26 C -0.136 4.136 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.097 0.903 30 H 0.148 0.852 31 H 0.148 0.852 32 H 0.101 0.899 33 H 0.109 0.891 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.087 0.913 38 H 0.144 0.856 39 H 0.093 0.907 40 H 0.077 0.923 41 H 0.110 0.890 42 H 0.084 0.916 43 H 0.101 0.899 44 H 0.091 0.909 45 H 0.065 0.935 46 H 0.083 0.917 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -12.709 -9.003 1.051 15.610 hybrid contribution 1.594 0.275 0.110 1.621 sum -11.114 -8.728 1.161 14.180 Atomic orbital electron populations 1.21482 0.91007 1.04678 1.03220 1.30655 1.06690 1.27865 1.11475 1.05151 0.73250 0.77468 0.74198 1.93571 1.83635 1.72456 1.45293 1.93575 1.83561 1.72379 1.45216 1.57418 1.22904 1.89137 1.12663 1.21478 0.95317 0.99571 0.83843 1.21872 0.97799 0.98316 0.96999 1.21083 0.93115 0.87688 0.96768 1.21879 0.97793 0.98397 0.96770 1.22039 0.95280 1.01642 0.82917 1.20156 0.83884 0.90809 0.83981 1.90361 1.70475 1.32707 1.52788 1.43260 1.07580 1.07608 1.56489 1.19740 0.89172 0.86244 1.48678 0.88034 1.25305 0.97125 0.98489 0.96114 1.69961 1.09154 1.29300 1.43550 0.85930 0.78973 0.81710 0.78263 1.20453 1.21003 1.19285 1.21972 0.93763 0.84328 1.02597 1.22816 0.93466 0.99302 0.94936 1.62780 1.20362 1.37080 1.04821 1.22508 0.98774 1.01595 0.90730 0.91158 0.91158 0.90341 0.85203 0.85214 0.89865 0.89138 0.90832 0.90718 0.90550 0.91327 0.85619 0.90663 0.92252 0.88960 0.91624 0.89858 0.90883 0.93484 0.91680 0.91548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.92 37.16 0.37 -0.82 16 2 C -0.64 -5.83 6.90 37.16 0.26 -5.57 16 3 S 2.61 35.73 5.41 -107.50 -0.58 35.15 16 4 O -0.96 -15.68 16.73 -57.54 -0.96 -16.64 16 5 O -0.96 -15.83 16.73 -57.54 -0.96 -16.80 16 6 N -0.98 -14.86 3.22 -113.48 -0.37 -15.22 16 7 C 0.12 1.92 5.80 -3.68 -0.02 1.90 16 8 C -0.11 -1.62 4.91 -26.58 -0.13 -1.75 16 9 C 0.11 1.82 0.44 -132.77 -0.06 1.76 16 10 C -0.11 -1.65 4.22 -26.58 -0.11 -1.76 16 11 C 0.11 1.71 5.78 -3.72 -0.02 1.69 16 12 C 0.42 9.39 5.26 -11.65 -0.06 9.33 16 13 O -0.58 -14.28 10.93 5.55 0.06 -14.21 16 14 N -0.43 -10.27 2.78 -115.63 -0.32 -10.59 16 15 C -0.31 -8.26 9.12 -14.93 -0.14 -8.40 16 16 H 0.10 2.88 7.26 -52.49 -0.38 2.50 16 17 C 0.03 0.84 5.04 -17.47 -0.09 0.75 16 18 N -0.88 -22.41 10.59 55.50 0.59 -21.82 16 19 Si 0.92 20.31 29.58 -169.99 -5.03 15.28 16 20 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 21 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 22 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 23 C 0.10 2.05 3.98 -4.32 -0.02 2.03 16 24 C 0.02 0.38 5.96 -3.67 -0.02 0.36 16 25 N -0.53 -8.37 4.89 -228.27 -1.12 -9.49 16 26 C 0.01 0.19 8.08 60.06 0.49 0.67 16 27 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.13 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.13 0.99 8.14 -51.92 -0.42 0.57 16 32 H 0.08 1.11 7.10 -51.93 -0.37 0.74 16 33 H 0.09 1.71 6.47 -51.93 -0.34 1.38 16 34 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 35 H 0.07 1.10 6.39 -51.93 -0.33 0.77 16 36 H 0.08 1.19 6.24 -51.93 -0.32 0.86 16 37 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.13 2.52 5.21 -51.93 -0.27 2.25 16 39 H 0.08 1.06 7.10 -51.93 -0.37 0.69 16 40 H 0.27 6.49 8.31 -40.82 -0.34 6.16 16 41 H 0.09 2.09 5.59 -51.93 -0.29 1.80 16 42 H 0.07 1.45 7.65 -51.94 -0.40 1.06 16 43 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 44 H 0.07 1.14 6.18 -51.93 -0.32 0.82 16 45 H 0.05 0.91 5.94 -51.93 -0.31 0.61 16 46 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 47 H 0.07 0.92 6.16 -51.93 -0.32 0.60 16 LS Contribution 356.48 15.07 5.37 5.37 Total: -1.00 -32.09 356.48 -9.83 -41.92 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: -6.96 Total: 6.87 kcal Atomic # 6 Polarization: -0.26 SS G_CDS: 0.44 Total: 0.19 kcal Atomic # 7 Polarization: -55.91 SS G_CDS: -1.22 Total: -57.12 kcal Atomic # 8 Polarization: -45.79 SS G_CDS: -1.86 Total: -47.65 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.03 Total: 15.28 kcal Atomic # 16 Polarization: 35.73 SS G_CDS: -0.58 Total: 35.15 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.09 -9.83 -41.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096050097.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.387 kcal (2) G-P(sol) polarization free energy of solvation -32.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds