Wall clock time and date at job start Tue Mar 31 2020 05:58:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.47187 * 110.99672 * 2 1 4 4 C 1.52993 * 108.72868 * 167.59630 * 3 2 1 5 5 N 1.46004 * 110.02870 * 50.30873 * 4 3 2 6 6 C 1.37096 * 118.53581 * 161.82372 * 5 4 3 7 7 H 1.08003 * 120.00174 * 201.55883 * 6 5 4 8 8 C 1.38950 * 119.99777 * 21.57066 * 6 5 4 9 9 N 1.31411 * 120.00141 * 16.54318 * 8 6 5 10 10 Si 1.86799 * 119.99781 * 196.55321 * 8 6 5 11 11 H 1.48500 * 109.47354 * 94.96743 * 10 8 6 12 12 H 1.48497 * 109.47286 * 214.97102 * 10 8 6 13 13 H 1.48501 * 109.47296 * 334.97265 * 10 8 6 14 14 C 1.33701 * 122.93138 * 341.84583 * 5 4 3 15 15 O 1.21291 * 118.61644 * 181.64605 * 14 5 4 16 16 C 1.46923 * 111.00391 * 237.10472 * 2 1 3 17 17 C 1.53157 * 109.36060 * 53.34552 * 16 2 1 18 18 C 1.53035 * 109.24145 * 182.64517 * 17 16 2 19 19 N 1.46845 * 109.53508 * 59.21802 * 18 17 16 20 20 C 1.46895 * 111.00061 * 174.20426 * 19 18 17 21 21 C 1.50699 * 109.47298 * 314.24962 * 20 19 18 22 22 C 1.38651 * 120.78605 * 269.71747 * 21 20 19 23 23 C 1.38211 * 119.15801 * 179.75317 * 22 21 20 24 24 N 1.31867 * 120.76275 * 0.53750 * 23 22 21 25 25 C 1.31873 * 121.73048 * 359.73900 * 24 23 22 26 26 C 1.38203 * 120.76109 * 359.97438 * 25 24 23 27 27 C 1.46853 * 111.22480 * 298.32745 * 19 18 17 28 28 C 1.53026 * 109.51913 * 61.68875 * 27 19 18 29 29 H 1.09008 * 109.46432 * 182.89361 * 1 2 3 30 30 H 1.08995 * 109.47170 * 62.89706 * 1 2 3 31 31 H 1.08992 * 109.47080 * 302.89221 * 1 2 3 32 32 H 1.08999 * 109.59954 * 287.36847 * 3 2 1 33 33 H 1.09006 * 109.59425 * 47.82776 * 3 2 1 34 34 H 1.08999 * 109.37645 * 290.13530 * 4 3 2 35 35 H 1.09006 * 109.37344 * 170.47670 * 4 3 2 36 36 H 0.97001 * 119.99995 * 180.02562 * 9 8 6 37 37 H 1.08996 * 109.50902 * 302.57422 * 17 16 2 38 38 H 1.09002 * 109.50879 * 62.71465 * 17 16 2 39 39 H 1.08996 * 109.46366 * 299.20179 * 18 17 16 40 40 H 1.09002 * 109.46460 * 179.23749 * 18 17 16 41 41 H 1.09002 * 109.47229 * 74.25441 * 20 19 18 42 42 H 1.09007 * 109.46884 * 194.25002 * 20 19 18 43 43 H 1.07996 * 120.42211 * 0.02562 * 22 21 20 44 44 H 1.07997 * 119.61676 * 180.25325 * 23 22 21 45 45 H 1.08000 * 119.62124 * 180.02562 * 25 24 23 46 46 H 1.07998 * 120.42291 * 180.02562 * 26 25 24 47 47 H 1.08999 * 109.46057 * 301.66982 * 27 19 18 48 48 H 1.09003 * 109.45176 * 181.69800 * 27 19 18 49 49 H 1.09001 * 109.51337 * 180.82262 * 28 27 19 50 50 H 1.09000 * 109.55267 * 60.69872 * 28 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9964 1.3741 0.0000 4 6 3.4935 1.3257 0.3112 5 7 4.1537 0.3556 -0.5575 6 6 5.5147 0.4287 -0.7055 7 1 5.9885 -0.0136 -1.5694 8 6 6.2846 1.0717 0.2561 9 7 5.7795 1.3206 1.4434 10 14 8.0373 1.5825 -0.1392 11 1 8.0512 2.9982 -0.5875 12 1 8.8804 1.4395 1.0749 13 1 8.5739 0.7161 -1.2193 14 6 3.4902 -0.6006 -1.2156 15 8 4.1210 -1.3844 -1.8929 16 6 1.9956 -0.7449 -1.1517 17 6 1.3723 -0.1969 -2.4389 18 6 1.8718 -1.0174 -3.6302 19 7 1.4999 -2.4261 -3.4467 20 6 1.8422 -3.2199 -4.6343 21 6 1.3978 -2.4869 -5.8738 22 6 0.1322 -2.6894 -6.4026 23 6 -0.2422 -1.9955 -7.5377 24 7 0.5919 -1.1578 -8.1220 25 6 1.8048 -0.9447 -7.6502 26 6 2.2468 -1.5983 -6.5156 27 6 2.1223 -2.9876 -2.2409 28 6 1.6297 -2.2253 -1.0089 29 1 -0.3632 -1.0265 0.0519 30 1 -0.3633 0.4682 -0.9148 31 1 -0.3633 0.5580 0.8629 32 1 1.8412 1.8253 -0.9800 33 1 1.4837 1.9625 0.7611 34 1 3.6373 1.0358 1.3521 35 1 3.9287 2.3118 0.1487 36 1 6.3168 1.7698 2.1146 37 1 0.2865 -0.2691 -2.3769 38 1 1.6617 0.8460 -2.5682 39 1 2.9564 -0.9343 -3.6992 40 1 1.4198 -0.6390 -4.5470 41 1 2.9207 -3.3737 -4.6701 42 1 1.3390 -4.1856 -4.5832 43 1 -0.5539 -3.3773 -5.9310 44 1 -1.2278 -2.1444 -7.9536 45 1 2.4599 -0.2507 -8.1558 46 1 3.2411 -1.4194 -6.1338 47 1 3.2059 -2.8961 -2.3154 48 1 1.8521 -4.0396 -2.1492 49 1 2.1029 -2.6326 -0.1154 50 1 0.5475 -2.3264 -0.9260 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096077160.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:19 Heat of formation + Delta-G solvation = 50.776318 kcal Electronic energy + Delta-G solvation = -32316.169867 eV Core-core repulsion = 28344.555054 eV Total energy + Delta-G solvation = -3971.614813 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -40.77786 -40.12140 -37.57857 -36.54759 -35.09602 -33.22078 -31.66578 -31.29535 -30.84183 -30.41350 -28.80188 -27.10454 -25.18089 -24.75746 -23.65132 -23.02137 -22.65956 -21.51317 -21.23512 -20.17273 -17.79050 -16.81997 -16.66135 -16.39165 -16.24448 -15.82465 -15.66005 -15.01529 -14.88521 -14.58557 -14.36711 -14.14283 -14.01874 -13.78299 -13.59868 -13.53816 -13.23143 -12.83048 -12.78139 -12.33707 -12.24037 -12.07931 -11.78021 -11.64434 -11.51853 -11.32609 -11.20198 -11.05897 -10.78206 -10.70193 -10.54147 -10.44413 -10.27709 -10.24946 -10.04624 -9.61954 -9.51949 -9.18042 -9.04501 -8.46090 -7.91564 -7.69927 -7.56958 -6.30815 -3.91446 1.08800 1.17692 3.12520 3.23011 3.28113 3.71165 3.81593 4.07410 4.24500 4.32087 4.39823 4.58036 4.72823 4.80722 5.02138 5.06266 5.08914 5.11467 5.22825 5.33801 5.44031 5.51208 5.53072 5.56332 5.64097 5.73887 5.76465 5.78240 5.80563 5.84786 5.89795 5.94354 5.98391 6.05903 6.16279 6.21443 6.25942 6.29755 6.33428 6.46189 6.54921 6.64555 6.76618 6.84830 7.26590 7.33033 7.38394 7.40819 7.42092 7.57553 7.90490 8.15400 8.45262 9.17130 9.45897 9.97026 10.67794 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.012875 B = 0.003662 C = 0.003207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2174.237772 B = 7644.507718 C = 8729.376740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.524 5.524 3 C 0.026 3.974 4 C 0.139 3.861 5 N -0.427 5.427 6 C -0.312 4.312 7 H 0.101 0.899 8 C 0.033 3.967 9 N -0.876 5.876 10 Si 0.923 3.077 11 H -0.279 1.279 12 H -0.284 1.284 13 H -0.269 1.269 14 C 0.461 3.539 15 O -0.588 6.588 16 C 0.107 3.893 17 C -0.132 4.132 18 C 0.054 3.946 19 N -0.527 5.527 20 C 0.091 3.909 21 C -0.029 4.029 22 C -0.156 4.156 23 C 0.092 3.908 24 N -0.491 5.491 25 C 0.095 3.905 26 C -0.164 4.164 27 C 0.031 3.969 28 C -0.079 4.079 29 H 0.069 0.931 30 H 0.027 0.973 31 H 0.064 0.936 32 H 0.033 0.967 33 H 0.081 0.919 34 H 0.095 0.905 35 H 0.065 0.935 36 H 0.267 0.733 37 H 0.073 0.927 38 H 0.062 0.938 39 H 0.059 0.941 40 H 0.064 0.936 41 H 0.050 0.950 42 H 0.083 0.917 43 H 0.135 0.865 44 H 0.153 0.847 45 H 0.154 0.846 46 H 0.134 0.866 47 H 0.099 0.901 48 H 0.060 0.940 49 H 0.072 0.928 50 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.785 -3.769 -8.392 14.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.248 5.248 3 C -0.102 4.102 4 C 0.015 3.985 5 N -0.143 5.143 6 C -0.440 4.440 7 H 0.118 0.882 8 C -0.171 4.171 9 N -0.515 5.515 10 Si 0.750 3.250 11 H -0.205 1.205 12 H -0.209 1.209 13 H -0.194 1.194 14 C 0.248 3.752 15 O -0.475 6.475 16 C 0.014 3.986 17 C -0.171 4.171 18 C -0.074 4.074 19 N -0.252 5.252 20 C -0.037 4.037 21 C -0.038 4.038 22 C -0.177 4.177 23 C -0.065 4.065 24 N -0.200 5.200 25 C -0.062 4.062 26 C -0.185 4.185 27 C -0.096 4.096 28 C -0.117 4.117 29 H 0.087 0.913 30 H 0.046 0.954 31 H 0.083 0.917 32 H 0.051 0.949 33 H 0.099 0.901 34 H 0.113 0.887 35 H 0.084 0.916 36 H 0.078 0.922 37 H 0.092 0.908 38 H 0.081 0.919 39 H 0.077 0.923 40 H 0.082 0.918 41 H 0.068 0.932 42 H 0.102 0.898 43 H 0.153 0.847 44 H 0.170 0.830 45 H 0.171 0.829 46 H 0.152 0.848 47 H 0.116 0.884 48 H 0.079 0.921 49 H 0.090 0.910 50 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -11.999 -3.832 -8.716 15.317 hybrid contribution 1.538 0.536 0.102 1.632 sum -10.460 -3.296 -8.613 13.945 Atomic orbital electron populations 1.22480 0.88230 1.02111 1.00155 1.62685 1.07247 1.14010 1.40810 1.22811 0.98091 0.89211 1.00070 1.21418 0.86597 0.93139 0.97300 1.43188 1.07031 1.24870 1.39188 1.19705 0.81277 1.35910 1.07118 0.88169 1.25319 0.99977 0.97655 0.94115 1.69996 1.37945 1.40686 1.02870 0.85950 0.81966 0.78902 0.78149 1.20465 1.20934 1.19374 1.19151 0.87679 0.82750 0.85585 1.90309 1.67640 1.43497 1.46048 1.21160 0.93651 0.95267 0.88533 1.22097 1.00791 0.99046 0.95200 1.22135 1.00296 0.87894 0.97070 1.62218 1.58972 1.02191 1.01781 1.21069 0.99412 0.96235 0.86970 1.20280 0.93666 0.94659 0.95152 1.22028 0.96543 1.01651 0.97461 1.22724 0.98828 0.92226 0.92673 1.67650 1.03970 1.16287 1.32112 1.22714 0.92572 0.97438 0.93442 1.22205 1.01475 0.97726 0.97053 1.22651 1.02106 0.96618 0.88206 1.21315 1.00399 0.92168 0.97853 0.91250 0.95411 0.91702 0.94918 0.90072 0.88709 0.91650 0.92221 0.90831 0.91909 0.92317 0.91759 0.93191 0.89844 0.84750 0.83013 0.82896 0.84771 0.88401 0.92140 0.90965 0.91660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 8.74 60.06 0.53 0.78 16 2 N -0.52 -9.19 4.69 -228.29 -1.07 -10.26 16 3 C 0.03 0.47 5.49 -3.67 -0.02 0.45 16 4 C 0.14 3.11 4.93 -4.31 -0.02 3.09 16 5 N -0.43 -10.72 2.98 -115.64 -0.34 -11.06 16 6 C -0.31 -8.51 9.12 -14.93 -0.14 -8.65 16 7 H 0.10 2.87 7.26 -52.48 -0.38 2.49 16 8 C 0.03 0.86 5.04 -17.47 -0.09 0.77 16 9 N -0.88 -22.97 10.60 55.50 0.59 -22.38 16 10 Si 0.92 20.43 29.58 -169.99 -5.03 15.40 16 11 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 12 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 13 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 14 C 0.46 10.82 6.02 -11.66 -0.07 10.75 16 15 O -0.59 -14.94 11.01 5.55 0.06 -14.87 16 16 C 0.11 1.99 0.44 -132.77 -0.06 1.93 16 17 C -0.13 -2.21 4.13 -26.63 -0.11 -2.32 16 18 C 0.05 0.90 4.34 -3.84 -0.02 0.88 16 19 N -0.53 -7.93 4.80 -236.12 -1.13 -9.06 16 20 C 0.09 1.17 5.47 -4.98 -0.03 1.15 16 21 C -0.03 -0.36 4.14 -104.32 -0.43 -0.79 16 22 C -0.16 -1.71 9.82 -39.44 -0.39 -2.09 16 23 C 0.09 1.01 11.18 -17.55 -0.20 0.82 16 24 N -0.49 -6.25 10.36 -13.25 -0.14 -6.39 16 25 C 0.09 1.13 11.18 -17.55 -0.20 0.94 16 26 C -0.16 -2.03 7.95 -39.44 -0.31 -2.35 16 27 C 0.03 0.52 5.16 -3.84 -0.02 0.50 16 28 C -0.08 -1.35 4.82 -26.63 -0.13 -1.48 16 29 H 0.07 0.90 6.41 -51.92 -0.33 0.56 16 30 H 0.03 0.36 6.14 -51.93 -0.32 0.04 16 31 H 0.06 0.79 8.06 -51.93 -0.42 0.37 16 32 H 0.03 0.57 6.28 -51.93 -0.33 0.24 16 33 H 0.08 1.24 8.00 -51.93 -0.42 0.83 16 34 H 0.09 2.33 6.81 -51.93 -0.35 1.97 16 35 H 0.07 1.50 7.64 -51.93 -0.40 1.10 16 36 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16 37 H 0.07 1.14 6.16 -51.93 -0.32 0.82 16 38 H 0.06 1.10 6.57 -51.93 -0.34 0.76 16 39 H 0.06 1.16 6.20 -51.93 -0.32 0.83 16 40 H 0.06 1.01 5.65 -51.93 -0.29 0.72 16 41 H 0.05 0.70 8.04 -51.93 -0.42 0.28 16 42 H 0.08 0.93 8.10 -51.93 -0.42 0.51 16 43 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 44 H 0.15 1.23 8.06 -52.49 -0.42 0.81 16 45 H 0.15 1.48 8.06 -52.49 -0.42 1.06 16 46 H 0.13 1.66 8.06 -52.49 -0.42 1.24 16 47 H 0.10 1.98 5.03 -51.93 -0.26 1.72 16 48 H 0.06 0.87 8.12 -51.93 -0.42 0.45 16 49 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 50 H 0.06 0.99 6.43 -51.93 -0.33 0.66 16 LS Contribution 368.93 15.07 5.56 5.56 Total: -1.00 -29.76 368.93 -10.53 -40.29 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: -7.32 Total: 8.41 kcal Atomic # 6 Polarization: 6.07 SS G_CDS: -1.70 Total: 4.37 kcal Atomic # 7 Polarization: -57.05 SS G_CDS: -2.10 Total: -59.14 kcal Atomic # 8 Polarization: -14.94 SS G_CDS: 0.06 Total: -14.87 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.03 Total: 15.40 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -29.76 -10.53 -40.29 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096077160.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.065 kcal (2) G-P(sol) polarization free energy of solvation -29.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.289 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds