Wall clock time and date at job start Tue Mar 31 2020 05:41:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35729 * 117.00134 * 2 1 4 4 C 1.39186 * 119.83991 * 0.02562 * 3 2 1 5 5 C 1.36545 * 120.38842 * 180.02562 * 4 3 2 6 6 C 1.40048 * 120.05984 * 359.67549 * 5 4 3 7 7 C 1.46734 * 120.15311 * 180.30139 * 6 5 4 8 8 C 1.35170 * 120.00246 * 310.13748 * 7 6 5 9 9 C 1.41797 * 119.99878 * 349.72567 * 8 7 6 10 10 O 1.21745 * 120.00335 * 353.21970 * 9 8 7 11 11 N 1.34780 * 119.99893 * 173.22146 * 9 8 7 12 12 C 1.46494 * 120.00068 * 179.97438 * 11 9 8 13 13 C 1.50708 * 109.46956 * 90.00318 * 12 11 9 14 14 H 1.07993 * 120.00096 * 359.97438 * 13 12 11 15 15 C 1.37880 * 119.99796 * 180.02562 * 13 12 11 16 16 N 1.31508 * 120.00165 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 119.99655 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.47016 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47028 * 119.99558 * 17 15 13 20 20 H 1.48500 * 109.46823 * 239.99656 * 17 15 13 21 21 C 1.46497 * 120.00136 * 0.02562 * 11 9 8 22 22 C 1.53001 * 109.47269 * 89.99433 * 21 11 9 23 23 C 1.47197 * 109.47301 * 180.02562 * 22 21 11 24 24 N 9.47586 * 160.72335 * 111.45382 * 4 1 2 25 25 C 1.40550 * 119.68332 * 0.57838 * 6 5 4 26 26 O 1.35685 * 120.19044 * 179.72497 * 25 6 5 27 27 C 1.42900 * 116.99882 * 179.72072 * 26 25 6 28 28 C 1.38407 * 119.61736 * 359.44708 * 25 6 5 29 29 H 1.08995 * 109.47421 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47486 * 300.00157 * 1 2 3 31 31 H 1.09004 * 109.46936 * 60.00184 * 1 2 3 32 32 H 1.07997 * 119.80258 * 359.97438 * 4 3 2 33 33 H 1.07997 * 119.96891 * 179.97438 * 5 4 3 34 34 H 1.08001 * 119.99613 * 130.14616 * 7 6 5 35 35 H 1.08002 * 119.99679 * 169.72355 * 8 7 6 36 36 H 1.09004 * 109.47391 * 209.99809 * 12 11 9 37 37 H 1.09000 * 109.47412 * 330.00469 * 12 11 9 38 38 H 0.97003 * 120.00050 * 180.02562 * 16 15 13 39 39 H 1.08997 * 109.47472 * 209.99981 * 21 11 9 40 40 H 1.09000 * 109.46947 * 330.00010 * 21 11 9 41 41 H 1.08997 * 109.47321 * 300.00641 * 22 21 11 42 42 H 1.09000 * 109.46665 * 60.00404 * 22 21 11 43 43 H 1.09000 * 109.47088 * 179.97438 * 27 26 25 44 44 H 1.09001 * 109.47436 * 300.00104 * 27 26 25 45 45 H 1.09002 * 109.46912 * 60.00005 * 27 26 25 46 46 H 1.07992 * 120.03415 * 180.25862 * 28 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2093 0.0000 4 6 1.2840 2.3745 0.0005 5 6 1.8922 3.5970 0.0000 6 6 3.2899 3.6852 0.0058 7 6 3.9457 4.9978 0.0119 8 6 3.5762 5.9421 -0.8819 9 6 2.7186 5.6021 -1.9587 10 8 2.4142 4.4391 -2.1508 11 7 2.2403 6.5666 -2.7697 12 6 1.3548 6.2153 -3.8825 13 6 -0.0775 6.2495 -3.4148 14 1 -0.3052 6.5067 -2.3909 15 6 -1.0971 5.9514 -4.2938 16 7 -0.8198 5.6377 -5.5405 17 14 -2.8723 5.9930 -3.7138 18 1 -2.9153 6.3711 -2.2783 19 1 -3.6304 6.9900 -4.5116 20 1 -3.4823 4.6506 -3.8902 21 6 2.6070 7.9660 -2.5390 22 6 3.8798 8.2954 -3.3216 23 6 4.2486 9.7014 -3.0893 24 7 4.5319 10.7875 -2.9091 25 6 4.0614 2.5103 -0.0002 26 8 5.4163 2.5838 -0.0003 27 6 6.1329 1.3475 -0.0004 28 6 3.4311 1.2781 -0.0001 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 0.2058 2.3113 0.0005 33 1 1.2949 4.4968 0.0000 34 1 4.7236 5.2094 0.7306 35 1 3.9343 6.9555 -0.7759 36 1 1.4891 6.9309 -4.6937 37 1 1.5972 5.2137 -4.2377 38 1 -1.5371 5.4283 -6.1590 39 1 1.7969 8.6138 -2.8737 40 1 2.7833 8.1248 -1.4752 41 1 4.6900 7.6476 -2.9869 42 1 3.7035 8.1367 -4.3854 43 1 7.2042 1.5485 -0.0009 44 1 5.8707 0.7754 0.8896 45 1 5.8705 0.7755 -0.8904 46 1 4.0173 0.3711 -0.0005 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096124550.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:33 Heat of formation + Delta-G solvation = -19.078249 kcal Electronic energy + Delta-G solvation = -30090.162031 eV Core-core repulsion = 25947.392251 eV Total energy + Delta-G solvation = -4142.769780 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.44720 -39.36038 -38.83670 -36.96633 -36.36633 -35.08867 -33.33662 -32.69866 -30.75696 -30.33568 -29.45731 -27.59276 -27.21714 -26.68856 -24.19535 -23.86994 -22.46538 -21.72248 -20.50966 -18.66107 -17.96939 -17.50645 -17.06217 -16.57368 -16.42227 -15.98827 -15.83800 -15.70265 -15.43796 -14.85782 -14.69418 -14.51949 -14.22533 -14.08641 -13.87015 -13.25948 -13.10078 -13.05315 -12.79418 -12.45119 -12.38329 -12.24592 -12.20801 -12.15568 -11.85578 -11.65940 -11.48274 -11.26109 -11.16468 -10.94979 -10.86367 -10.81452 -10.61965 -10.48077 -10.14577 -9.67345 -9.26386 -8.93719 -8.46502 -8.25280 -7.69619 -7.37766 -6.07207 -4.11367 1.11080 1.74778 2.09851 2.79445 2.86018 3.19638 3.26357 3.34391 3.37289 3.45938 3.79629 4.02313 4.06347 4.36233 4.44252 4.96540 4.96776 5.03649 5.09554 5.12327 5.17669 5.22060 5.23807 5.25940 5.28123 5.36305 5.40233 5.51866 5.53148 5.57653 5.67260 5.70830 5.90806 5.93035 6.14365 6.22118 6.32557 6.51080 6.63562 6.77356 6.84917 7.09547 7.34811 7.43822 7.51806 7.59954 7.62704 7.89704 8.20947 8.38275 8.89110 9.11339 9.53943 11.00783 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.007335 B = 0.004473 C = 0.002972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3816.156126 B = 6257.796505 C = 9418.307554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.320 6.320 3 C 0.170 3.830 4 C -0.240 4.240 5 C 0.037 3.963 6 C -0.125 4.125 7 C -0.005 4.005 8 C -0.226 4.226 9 C 0.533 3.467 10 O -0.523 6.523 11 N -0.595 5.595 12 C 0.245 3.755 13 C -0.523 4.523 14 H 0.058 0.942 15 C 0.062 3.938 16 N -0.894 5.894 17 Si 0.893 3.107 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.284 1.284 21 C 0.119 3.881 22 C -0.051 4.051 23 C 0.218 3.782 24 N -0.449 5.449 25 C 0.176 3.824 26 O -0.311 6.311 27 C 0.028 3.972 28 C -0.254 4.254 29 H 0.096 0.904 30 H 0.055 0.945 31 H 0.061 0.939 32 H 0.127 0.873 33 H 0.126 0.874 34 H 0.128 0.872 35 H 0.127 0.873 36 H 0.032 0.968 37 H 0.046 0.954 38 H 0.262 0.738 39 H 0.091 0.909 40 H 0.077 0.923 41 H 0.108 0.892 42 H 0.116 0.884 43 H 0.097 0.903 44 H 0.054 0.946 45 H 0.056 0.944 46 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.815 -6.959 12.161 17.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.233 6.233 3 C 0.125 3.875 4 C -0.259 4.259 5 C 0.019 3.981 6 C -0.126 4.126 7 C -0.025 4.025 8 C -0.246 4.246 9 C 0.324 3.676 10 O -0.402 6.402 11 N -0.326 5.326 12 C 0.126 3.874 13 C -0.562 4.562 14 H 0.076 0.924 15 C -0.140 4.140 16 N -0.533 5.533 17 Si 0.721 3.279 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.210 1.210 21 C -0.008 4.008 22 C -0.093 4.093 23 C -0.100 4.100 24 N -0.126 5.126 25 C 0.130 3.870 26 O -0.224 6.224 27 C -0.068 4.068 28 C -0.273 4.273 29 H 0.115 0.885 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.144 0.856 33 H 0.144 0.856 34 H 0.145 0.855 35 H 0.145 0.855 36 H 0.050 0.950 37 H 0.064 0.936 38 H 0.072 0.928 39 H 0.110 0.890 40 H 0.095 0.905 41 H 0.126 0.874 42 H 0.134 0.866 43 H 0.115 0.885 44 H 0.073 0.927 45 H 0.074 0.926 46 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 10.168 -6.037 12.113 16.928 hybrid contribution -1.423 -0.415 -0.138 1.489 sum 8.745 -6.452 11.975 16.171 Atomic orbital electron populations 1.23069 0.78192 1.03581 1.01960 1.85952 1.21608 1.27412 1.88376 1.18761 0.91425 0.83974 0.93353 1.20721 1.00057 0.92110 1.13013 1.20436 0.92018 0.97229 0.88447 1.17997 0.92331 0.90710 1.11513 1.22055 0.94220 0.90944 0.95249 1.22361 1.04362 1.00073 0.97832 1.17124 0.81135 0.85884 0.83470 1.90882 1.59023 1.18177 1.72083 1.48208 1.47653 1.04575 1.32179 1.19294 0.87553 0.97558 0.83003 1.21446 0.90943 1.46870 0.96910 0.92410 1.24905 0.99100 0.95137 0.94831 1.69930 1.32565 1.46838 1.03934 0.86517 0.84886 0.77650 0.78803 1.19811 1.21019 1.21006 1.21294 0.94907 0.85365 0.99232 1.19941 1.00723 0.83577 1.05053 1.29190 0.92929 0.94985 0.92858 1.81231 1.09454 1.12542 1.09385 1.18589 0.81762 0.92376 0.94257 1.86004 1.15519 1.32397 1.88440 1.23038 0.96515 0.85724 1.01489 1.20066 0.92446 0.97018 1.17816 0.88526 0.92608 0.92039 0.85556 0.85569 0.85460 0.85546 0.95049 0.93587 0.92818 0.89037 0.90494 0.87382 0.86647 0.88455 0.92737 0.92553 0.85163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 9.80 101.05 0.99 1.29 16 2 O -0.32 -4.60 10.48 -18.89 -0.20 -4.80 16 3 C 0.17 2.69 6.69 -39.04 -0.26 2.43 16 4 C -0.24 -3.92 8.96 -39.84 -0.36 -4.27 16 5 C 0.04 0.63 6.76 -39.51 -0.27 0.36 16 6 C -0.12 -2.00 4.26 -104.92 -0.45 -2.44 16 7 C 0.00 -0.06 9.31 -37.24 -0.35 -0.41 16 8 C -0.23 -3.20 8.93 -39.31 -0.35 -3.55 16 9 C 0.53 9.93 6.74 -14.90 -0.10 9.83 16 10 O -0.52 -11.77 11.91 5.15 0.06 -11.71 16 11 N -0.60 -10.99 2.46 -178.42 -0.44 -11.43 16 12 C 0.25 5.81 5.16 -5.19 -0.03 5.78 16 13 C -0.52 -13.77 9.39 -34.44 -0.32 -14.09 16 14 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 15 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 16 N -0.89 -25.45 13.29 55.43 0.74 -24.72 16 17 Si 0.89 20.96 29.54 -169.99 -5.02 15.94 16 18 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 19 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 21 C 0.12 1.62 5.00 -4.04 -0.02 1.60 16 22 C -0.05 -0.57 6.02 -29.52 -0.18 -0.74 16 23 C 0.22 2.72 15.44 -20.74 -0.32 2.40 16 24 N -0.45 -6.74 18.54 42.18 0.78 -5.96 16 25 C 0.18 2.69 6.70 -38.65 -0.26 2.43 16 26 O -0.31 -4.14 9.95 -18.76 -0.19 -4.33 16 27 C 0.03 0.25 9.81 101.05 0.99 1.24 16 28 C -0.25 -3.80 8.97 -39.33 -0.35 -4.16 16 29 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.06 0.54 7.65 -51.93 -0.40 0.14 16 31 H 0.06 0.72 7.65 -51.93 -0.40 0.33 16 32 H 0.13 1.88 6.26 -52.49 -0.33 1.55 16 33 H 0.13 2.19 7.56 -52.49 -0.40 1.79 16 34 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 35 H 0.13 1.37 6.22 -52.49 -0.33 1.04 16 36 H 0.03 0.75 8.07 -51.93 -0.42 0.33 16 37 H 0.05 1.26 7.42 -51.93 -0.39 0.87 16 38 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 39 H 0.09 1.33 8.07 -51.93 -0.42 0.91 16 40 H 0.08 0.89 6.18 -51.93 -0.32 0.57 16 41 H 0.11 1.02 8.14 -51.93 -0.42 0.59 16 42 H 0.12 1.28 8.14 -51.93 -0.42 0.85 16 43 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 44 H 0.05 0.43 7.66 -51.93 -0.40 0.03 16 45 H 0.06 0.51 7.66 -51.93 -0.40 0.12 16 46 H 0.13 1.66 6.30 -52.49 -0.33 1.33 16 LS Contribution 394.36 15.07 5.94 5.94 Total: -1.00 -34.03 394.36 -6.22 -40.25 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -6.18 Total: 1.51 kcal Atomic # 6 Polarization: 1.02 SS G_CDS: -1.73 Total: -0.71 kcal Atomic # 7 Polarization: -43.19 SS G_CDS: 1.08 Total: -42.11 kcal Atomic # 8 Polarization: -20.51 SS G_CDS: -0.32 Total: -20.84 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -34.03 -6.22 -40.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096124550.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.176 kcal (2) G-P(sol) polarization free energy of solvation -34.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds