Wall clock time and date at job start Tue Mar 31 2020 05:58:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.47198 * 110.99804 * 2 1 4 4 C 1.52982 * 108.72426 * 54.29324 * 3 2 1 5 5 N 1.46013 * 110.05122 * 50.21585 * 4 3 2 6 6 C 1.37094 * 118.51979 * 161.88779 * 5 4 3 7 7 H 1.08006 * 119.99794 * 201.35700 * 6 5 4 8 8 C 1.38950 * 120.00755 * 21.35902 * 6 5 4 9 9 N 1.31411 * 119.99508 * 16.34110 * 8 6 5 10 10 Si 1.86793 * 120.00328 * 196.34389 * 8 6 5 11 11 H 1.48493 * 109.47418 * 59.99800 * 10 8 6 12 12 H 1.48513 * 109.47038 * 180.02562 * 10 8 6 13 13 H 1.48496 * 109.47367 * 299.99418 * 10 8 6 14 14 C 1.33701 * 122.94908 * 341.91091 * 5 4 3 15 15 O 1.21294 * 118.62927 * 181.76797 * 14 5 4 16 16 C 1.46924 * 110.99873 * 122.85910 * 2 1 3 17 17 C 1.53157 * 109.32617 * 166.83517 * 16 2 1 18 18 C 1.53031 * 109.25431 * 182.66841 * 17 16 2 19 19 N 1.46844 * 109.51851 * 59.24120 * 18 17 16 20 20 C 1.46900 * 110.99849 * 174.18726 * 19 18 17 21 21 C 1.50702 * 109.46783 * 169.99837 * 20 19 18 22 22 C 1.38675 * 120.41805 * 90.00004 * 21 20 19 23 23 C 1.38630 * 118.41797 * 180.02562 * 22 21 20 24 24 C 1.38217 * 119.16590 * 359.97438 * 23 22 21 25 25 N 1.31856 * 120.76448 * 0.02562 * 24 23 22 26 26 C 1.31887 * 121.72318 * 0.02562 * 25 24 23 27 27 C 1.46847 * 111.21586 * 298.29535 * 19 18 17 28 28 C 1.53031 * 109.53341 * 61.69279 * 27 19 18 29 29 H 1.08991 * 109.47407 * 297.14135 * 1 2 3 30 30 H 1.09006 * 109.46784 * 57.13685 * 1 2 3 31 31 H 1.09000 * 109.46816 * 177.13487 * 1 2 3 32 32 H 1.09000 * 109.59657 * 294.51985 * 3 2 1 33 33 H 1.08999 * 109.59034 * 174.06580 * 3 2 1 34 34 H 1.08994 * 109.37170 * 290.03785 * 4 3 2 35 35 H 1.08994 * 109.36796 * 170.39128 * 4 3 2 36 36 H 0.97001 * 120.00110 * 179.97438 * 9 8 6 37 37 H 1.09002 * 109.50452 * 62.73947 * 17 16 2 38 38 H 1.08995 * 109.51012 * 302.60443 * 17 16 2 39 39 H 1.09007 * 109.46244 * 299.22988 * 18 17 16 40 40 H 1.08995 * 109.46766 * 179.25566 * 18 17 16 41 41 H 1.09000 * 109.47556 * 49.99844 * 20 19 18 42 42 H 1.09000 * 109.47110 * 289.99243 * 20 19 18 43 43 H 1.07998 * 120.78717 * 359.74270 * 22 21 20 44 44 H 1.08002 * 120.41655 * 179.97438 * 23 22 21 45 45 H 1.08001 * 119.62152 * 180.02562 * 24 23 22 46 46 H 1.07998 * 119.61933 * 180.02562 * 26 25 24 47 47 H 1.09000 * 109.45918 * 181.71253 * 27 19 18 48 48 H 1.09003 * 109.46002 * 301.67194 * 27 19 18 49 49 H 1.09003 * 109.50867 * 180.85667 * 28 27 19 50 50 H 1.08999 * 109.51101 * 60.72178 * 28 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9965 1.3742 0.0000 4 6 1.3830 2.1357 1.1765 5 7 1.5299 1.3611 2.4055 6 6 1.3947 2.0076 3.6068 7 1 1.8220 1.5794 4.5016 8 6 0.7079 3.2136 3.6735 9 7 -0.0771 3.5782 2.6846 10 14 0.9004 4.3167 5.1686 11 1 2.3255 4.7069 5.3157 12 1 0.0684 5.5347 4.9955 13 1 0.4594 3.5854 6.3834 14 6 1.7909 0.0498 2.4117 15 8 1.8651 -0.5229 3.4784 16 6 1.9955 -0.7442 1.1522 17 6 3.4910 -1.0039 0.9475 18 6 4.0233 -1.8363 2.1161 19 7 3.2931 -3.1085 2.1849 20 6 3.8691 -3.9913 3.2081 21 6 2.9582 -5.1724 3.4229 22 6 3.1176 -6.3276 2.6724 23 6 2.2561 -7.3889 2.9039 24 6 1.2744 -7.2615 3.8685 25 7 1.1521 -6.1476 4.5634 26 6 1.9529 -5.1178 4.3694 27 6 1.8616 -2.8872 2.4262 28 6 1.2653 -2.0856 1.2670 29 1 -0.3634 0.4688 0.9144 30 1 -0.3633 0.5577 -0.8633 31 1 -0.3633 -1.0264 -0.0514 32 1 1.7296 1.8682 -0.9343 33 1 3.0810 1.3494 0.1062 34 1 0.3245 2.3089 0.9826 35 1 1.8896 3.0941 1.2904 36 1 -0.5569 4.4199 2.7312 37 1 4.0230 -0.0534 0.9056 38 1 3.6417 -1.5475 0.0149 39 1 3.8835 -1.2865 3.0470 40 1 5.0847 -2.0343 1.9672 41 1 3.9778 -3.4415 4.1430 42 1 4.8466 -4.3419 2.8770 43 1 3.8914 -6.3971 1.9223 44 1 2.3510 -8.3036 2.3377 45 1 0.5996 -8.0838 4.0552 46 1 1.8225 -4.2219 4.9583 47 1 1.3534 -3.8485 2.5023 48 1 1.7314 -2.3332 3.3558 49 1 0.2061 -1.9085 1.4538 50 1 1.3834 -2.6448 0.3389 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096230113.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:13 Heat of formation + Delta-G solvation = 51.304784 kcal Electronic energy + Delta-G solvation = -32417.887003 eV Core-core repulsion = 28446.295106 eV Total energy + Delta-G solvation = -3971.591897 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -40.82022 -40.15093 -37.63088 -36.28961 -34.98544 -33.11660 -32.04538 -31.57660 -30.58805 -30.34957 -28.46817 -26.73717 -25.30548 -24.97318 -23.68947 -22.97850 -22.11444 -21.53073 -21.40796 -20.15211 -17.78098 -17.05591 -16.80490 -16.41385 -16.26945 -15.68503 -15.37911 -14.99618 -14.85714 -14.50127 -14.40013 -14.19297 -13.87160 -13.81911 -13.48467 -13.09328 -13.04732 -12.99228 -12.60277 -12.23260 -12.20961 -12.00648 -11.71624 -11.59022 -11.48332 -11.32505 -11.20068 -11.00163 -10.94981 -10.65285 -10.58514 -10.42927 -10.27171 -10.20044 -9.85788 -9.79996 -9.42105 -9.10551 -8.98044 -8.83927 -7.87605 -7.72995 -7.34403 -6.33099 -3.95702 1.07252 1.28568 3.13001 3.19762 3.23301 3.74075 3.81669 4.02229 4.29183 4.37406 4.43932 4.76633 4.80055 4.82105 4.97842 5.00556 5.03700 5.17626 5.24058 5.36797 5.45127 5.51952 5.68485 5.74071 5.75196 5.80649 5.82244 5.88602 5.91972 5.97476 6.00679 6.06819 6.12574 6.18933 6.24383 6.30794 6.34344 6.35233 6.38812 6.48816 6.58074 6.68607 6.73181 6.85469 7.18490 7.37242 7.40811 7.42949 7.49455 7.52012 7.97439 8.11175 8.40766 9.13685 9.40866 9.91511 10.63312 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.014696 B = 0.003503 C = 0.003169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.773268 B = 7990.185461 C = 8832.835604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.525 5.525 3 C 0.023 3.977 4 C 0.099 3.901 5 N -0.432 5.432 6 C -0.312 4.312 7 H 0.100 0.900 8 C 0.033 3.967 9 N -0.880 5.880 10 Si 0.925 3.075 11 H -0.274 1.274 12 H -0.284 1.284 13 H -0.273 1.273 14 C 0.427 3.573 15 O -0.586 6.586 16 C 0.105 3.895 17 C -0.087 4.087 18 C 0.053 3.947 19 N -0.527 5.527 20 C 0.097 3.903 21 C -0.124 4.124 22 C -0.060 4.060 23 C -0.177 4.177 24 C 0.089 3.911 25 N -0.485 5.485 26 C 0.110 3.890 27 C 0.031 3.969 28 C -0.084 4.084 29 H 0.044 0.956 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.083 0.917 33 H 0.072 0.928 34 H 0.092 0.908 35 H 0.065 0.935 36 H 0.268 0.732 37 H 0.064 0.936 38 H 0.078 0.922 39 H 0.058 0.942 40 H 0.066 0.934 41 H 0.047 0.953 42 H 0.080 0.920 43 H 0.134 0.866 44 H 0.131 0.869 45 H 0.151 0.849 46 H 0.155 0.845 47 H 0.059 0.941 48 H 0.095 0.905 49 H 0.063 0.937 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.818 -13.155 -5.551 15.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.249 5.249 3 C -0.105 4.105 4 C -0.026 4.026 5 N -0.149 5.149 6 C -0.440 4.440 7 H 0.117 0.883 8 C -0.170 4.170 9 N -0.519 5.519 10 Si 0.751 3.249 11 H -0.200 1.200 12 H -0.209 1.209 13 H -0.198 1.198 14 C 0.214 3.786 15 O -0.472 6.472 16 C 0.012 3.988 17 C -0.126 4.126 18 C -0.075 4.075 19 N -0.252 5.252 20 C -0.031 4.031 21 C -0.126 4.126 22 C -0.086 4.086 23 C -0.197 4.197 24 C -0.068 4.068 25 N -0.194 5.194 26 C -0.048 4.048 27 C -0.097 4.097 28 C -0.123 4.123 29 H 0.063 0.937 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.101 0.899 33 H 0.090 0.910 34 H 0.110 0.890 35 H 0.084 0.916 36 H 0.078 0.922 37 H 0.082 0.918 38 H 0.096 0.904 39 H 0.076 0.924 40 H 0.084 0.916 41 H 0.065 0.935 42 H 0.099 0.901 43 H 0.152 0.848 44 H 0.149 0.851 45 H 0.169 0.831 46 H 0.172 0.828 47 H 0.077 0.923 48 H 0.113 0.887 49 H 0.082 0.918 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 5.257 -13.620 -5.361 15.552 hybrid contribution 0.196 1.584 1.292 2.054 sum 5.452 -12.035 -4.069 13.825 Atomic orbital electron populations 1.22490 0.87682 1.01702 1.01613 1.62751 1.08206 1.13622 1.40325 1.22812 0.99990 0.88705 0.99003 1.21973 1.03156 0.94315 0.83153 1.43248 1.59664 1.05591 1.06390 1.19648 1.33401 1.03067 0.87861 0.88269 1.25305 0.94614 0.98539 0.98568 1.69963 1.26028 1.23176 1.32760 0.86018 0.78346 0.79065 0.81424 1.19960 1.20934 1.19800 1.20229 0.84729 0.82660 0.90962 1.90308 1.57523 1.67270 1.32111 1.21164 0.96216 0.94005 0.87437 1.21446 0.93020 0.99254 0.98858 1.22120 0.96625 0.89549 0.99236 1.62225 1.03670 1.14021 1.45242 1.20953 0.96153 0.91076 0.94901 1.20839 0.98297 0.96240 0.97246 1.21461 0.98118 0.92051 0.97014 1.22108 0.97367 1.00002 1.00245 1.22736 0.96290 0.95473 0.92289 1.67724 1.25700 1.00365 1.25569 1.22829 0.90148 0.96587 0.95227 1.22695 0.87052 0.98976 1.00959 1.21440 0.98506 0.93323 0.98989 0.93705 0.91702 0.91600 0.89864 0.90954 0.89015 0.91620 0.92170 0.91774 0.90366 0.92401 0.91552 0.93458 0.90149 0.84814 0.85058 0.83131 0.82803 0.92299 0.88725 0.91809 0.91064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.23 8.09 60.07 0.49 0.72 16 2 N -0.53 -9.21 4.89 -228.29 -1.12 -10.32 16 3 C 0.02 0.41 5.96 -3.67 -0.02 0.39 16 4 C 0.10 2.16 3.98 -4.31 -0.02 2.14 16 5 N -0.43 -10.67 2.78 -115.64 -0.32 -11.00 16 6 C -0.31 -8.50 9.13 -14.93 -0.14 -8.63 16 7 H 0.10 2.85 7.26 -52.48 -0.38 2.47 16 8 C 0.03 0.86 5.04 -17.47 -0.09 0.77 16 9 N -0.88 -22.92 10.57 55.50 0.59 -22.33 16 10 Si 0.92 20.56 29.58 -169.99 -5.03 15.53 16 11 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 12 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 13 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 14 C 0.43 9.90 5.36 -11.66 -0.06 9.84 16 15 O -0.59 -14.94 11.03 5.55 0.06 -14.87 16 16 C 0.10 1.95 0.44 -132.78 -0.06 1.89 16 17 C -0.09 -1.44 4.82 -26.63 -0.13 -1.57 16 18 C 0.05 0.85 5.17 -3.84 -0.02 0.83 16 19 N -0.53 -8.01 4.80 -236.12 -1.13 -9.14 16 20 C 0.10 1.27 5.45 -4.98 -0.03 1.24 16 21 C -0.12 -1.58 4.14 -104.48 -0.43 -2.01 16 22 C -0.06 -0.65 9.86 -39.28 -0.39 -1.04 16 23 C -0.18 -1.76 10.11 -39.44 -0.40 -2.16 16 24 C 0.09 1.01 11.18 -17.55 -0.20 0.81 16 25 N -0.49 -6.89 10.36 -13.25 -0.14 -7.03 16 26 C 0.11 1.55 8.97 -17.55 -0.16 1.39 16 27 C 0.03 0.53 4.32 -3.84 -0.02 0.51 16 28 C -0.08 -1.48 4.04 -26.64 -0.11 -1.59 16 29 H 0.04 0.94 5.95 -51.93 -0.31 0.63 16 30 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.07 1.05 6.25 -51.93 -0.32 0.72 16 32 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 33 H 0.07 1.22 6.27 -51.93 -0.33 0.90 16 34 H 0.09 2.16 5.61 -51.93 -0.29 1.87 16 35 H 0.07 1.50 7.63 -51.93 -0.40 1.11 16 36 H 0.27 6.66 8.31 -40.82 -0.34 6.32 16 37 H 0.06 1.07 6.56 -51.93 -0.34 0.72 16 38 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 39 H 0.06 1.12 6.21 -51.92 -0.32 0.80 16 40 H 0.07 0.91 8.12 -51.93 -0.42 0.48 16 41 H 0.05 0.66 8.03 -51.93 -0.42 0.24 16 42 H 0.08 0.89 8.10 -51.93 -0.42 0.47 16 43 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 44 H 0.13 0.92 8.06 -52.49 -0.42 0.49 16 45 H 0.15 1.27 8.06 -52.49 -0.42 0.85 16 46 H 0.15 2.24 8.06 -52.49 -0.42 1.82 16 47 H 0.06 0.99 5.64 -51.93 -0.29 0.70 16 48 H 0.10 1.96 5.04 -51.93 -0.26 1.70 16 49 H 0.06 1.18 6.50 -51.93 -0.34 0.84 16 50 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 LS Contribution 367.66 15.07 5.54 5.54 Total: -1.00 -29.68 367.66 -10.68 -40.36 By element: Atomic # 1 Polarization: 17.10 SS G_CDS: -7.36 Total: 9.74 kcal Atomic # 6 Polarization: 5.30 SS G_CDS: -1.77 Total: 3.53 kcal Atomic # 7 Polarization: -57.70 SS G_CDS: -2.12 Total: -59.82 kcal Atomic # 8 Polarization: -14.94 SS G_CDS: 0.06 Total: -14.87 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.03 Total: 15.53 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -29.68 -10.68 -40.36 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096230113.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.661 kcal (2) G-P(sol) polarization free energy of solvation -29.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.356 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds