Wall clock time and date at job start Tue Mar 31 2020 05:58:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.47198 * 110.99804 * 2 1 4 4 C 1.52982 * 108.72426 * 54.29324 * 3 2 1 5 5 N 1.46013 * 110.05122 * 50.21585 * 4 3 2 6 6 C 1.37094 * 118.51979 * 161.88779 * 5 4 3 7 7 H 1.08006 * 119.99794 * 201.35700 * 6 5 4 8 8 C 1.38950 * 120.00755 * 21.35902 * 6 5 4 9 9 N 1.31411 * 119.99508 * 16.34110 * 8 6 5 10 10 Si 1.86793 * 120.00328 * 196.34389 * 8 6 5 11 11 H 1.48493 * 109.47418 * 59.99800 * 10 8 6 12 12 H 1.48513 * 109.47038 * 180.02562 * 10 8 6 13 13 H 1.48496 * 109.47367 * 299.99418 * 10 8 6 14 14 C 1.33701 * 122.94908 * 341.91091 * 5 4 3 15 15 O 1.21294 * 118.62927 * 181.76797 * 14 5 4 16 16 C 1.46924 * 110.99873 * 122.85910 * 2 1 3 17 17 C 1.53157 * 109.32617 * 166.83517 * 16 2 1 18 18 C 1.53031 * 109.25431 * 182.66841 * 17 16 2 19 19 N 1.46844 * 109.51851 * 59.24120 * 18 17 16 20 20 C 1.46900 * 110.99849 * 174.18726 * 19 18 17 21 21 C 1.50702 * 109.46783 * 169.99837 * 20 19 18 22 22 C 1.38675 * 120.41805 * 90.00004 * 21 20 19 23 23 C 1.38630 * 118.41797 * 180.02562 * 22 21 20 24 24 C 1.38217 * 119.16590 * 359.97438 * 23 22 21 25 25 N 1.31856 * 120.76448 * 0.02562 * 24 23 22 26 26 C 1.31887 * 121.72318 * 0.02562 * 25 24 23 27 27 C 1.46847 * 111.21586 * 298.29535 * 19 18 17 28 28 C 1.53031 * 109.53341 * 61.69279 * 27 19 18 29 29 H 1.08991 * 109.47407 * 297.14135 * 1 2 3 30 30 H 1.09006 * 109.46784 * 57.13685 * 1 2 3 31 31 H 1.09000 * 109.46816 * 177.13487 * 1 2 3 32 32 H 1.09000 * 109.59657 * 294.51985 * 3 2 1 33 33 H 1.08999 * 109.59034 * 174.06580 * 3 2 1 34 34 H 1.08994 * 109.37170 * 290.03785 * 4 3 2 35 35 H 1.08994 * 109.36796 * 170.39128 * 4 3 2 36 36 H 0.97001 * 120.00110 * 179.97438 * 9 8 6 37 37 H 1.09002 * 109.50452 * 62.73947 * 17 16 2 38 38 H 1.08995 * 109.51012 * 302.60443 * 17 16 2 39 39 H 1.09007 * 109.46244 * 299.22988 * 18 17 16 40 40 H 1.08995 * 109.46766 * 179.25566 * 18 17 16 41 41 H 1.09000 * 109.47556 * 49.99844 * 20 19 18 42 42 H 1.09000 * 109.47110 * 289.99243 * 20 19 18 43 43 H 1.07998 * 120.78717 * 359.74270 * 22 21 20 44 44 H 1.08002 * 120.41655 * 179.97438 * 23 22 21 45 45 H 1.08001 * 119.62152 * 180.02562 * 24 23 22 46 46 H 1.07998 * 119.61933 * 180.02562 * 26 25 24 47 47 H 1.09000 * 109.45918 * 181.71253 * 27 19 18 48 48 H 1.09003 * 109.46002 * 301.67194 * 27 19 18 49 49 H 1.09003 * 109.50867 * 180.85667 * 28 27 19 50 50 H 1.08999 * 109.51101 * 60.72178 * 28 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9965 1.3742 0.0000 4 6 1.3830 2.1357 1.1765 5 7 1.5299 1.3611 2.4055 6 6 1.3947 2.0076 3.6068 7 1 1.8220 1.5794 4.5016 8 6 0.7079 3.2136 3.6735 9 7 -0.0771 3.5782 2.6846 10 14 0.9004 4.3167 5.1686 11 1 2.3255 4.7069 5.3157 12 1 0.0684 5.5347 4.9955 13 1 0.4594 3.5854 6.3834 14 6 1.7909 0.0498 2.4117 15 8 1.8651 -0.5229 3.4784 16 6 1.9955 -0.7442 1.1522 17 6 3.4910 -1.0039 0.9475 18 6 4.0233 -1.8363 2.1161 19 7 3.2931 -3.1085 2.1849 20 6 3.8691 -3.9913 3.2081 21 6 2.9582 -5.1724 3.4229 22 6 3.1176 -6.3276 2.6724 23 6 2.2561 -7.3889 2.9039 24 6 1.2744 -7.2615 3.8685 25 7 1.1521 -6.1476 4.5634 26 6 1.9529 -5.1178 4.3694 27 6 1.8616 -2.8872 2.4262 28 6 1.2653 -2.0856 1.2670 29 1 -0.3634 0.4688 0.9144 30 1 -0.3633 0.5577 -0.8633 31 1 -0.3633 -1.0264 -0.0514 32 1 1.7296 1.8682 -0.9343 33 1 3.0810 1.3494 0.1062 34 1 0.3245 2.3089 0.9826 35 1 1.8896 3.0941 1.2904 36 1 -0.5569 4.4199 2.7312 37 1 4.0230 -0.0534 0.9056 38 1 3.6417 -1.5475 0.0149 39 1 3.8835 -1.2865 3.0470 40 1 5.0847 -2.0343 1.9672 41 1 3.9778 -3.4415 4.1430 42 1 4.8466 -4.3419 2.8770 43 1 3.8914 -6.3971 1.9223 44 1 2.3510 -8.3036 2.3377 45 1 0.5996 -8.0838 4.0552 46 1 1.8225 -4.2219 4.9583 47 1 1.3534 -3.8485 2.5023 48 1 1.7314 -2.3332 3.3558 49 1 0.2061 -1.9085 1.4538 50 1 1.3834 -2.6448 0.3389 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096230113.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:12 Heat of formation + Delta-G solvation = 30.003069 kcal Electronic energy + Delta-G solvation = -32418.810715 eV Core-core repulsion = 28446.295106 eV Total energy + Delta-G solvation = -3972.515609 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.35261 -41.18730 -39.03163 -38.01229 -36.63934 -34.43878 -33.43000 -32.93861 -32.10011 -31.56230 -30.02264 -28.08478 -27.13699 -26.33717 -24.71928 -24.23409 -23.54106 -23.14922 -22.62962 -21.51909 -19.57500 -18.55116 -17.93856 -17.90447 -17.34113 -17.20344 -16.81350 -16.60278 -16.32732 -16.08946 -15.77753 -15.65233 -15.35690 -15.00411 -14.78294 -14.51639 -14.23602 -14.12058 -13.87619 -13.72355 -13.61383 -13.46724 -13.30227 -13.15773 -12.99932 -12.82421 -12.66941 -12.44250 -12.39540 -12.27137 -12.21323 -12.10920 -11.88871 -11.64732 -11.27574 -11.03452 -10.71572 -10.52154 -10.35367 -9.94267 -9.69822 -9.31227 -8.95163 -8.29343 -6.03493 0.15404 0.39878 1.31509 1.33986 1.44043 2.00480 2.20184 2.69142 2.78673 3.02907 3.12225 3.21377 3.51560 3.66296 3.77299 3.85878 3.91288 3.96438 4.11705 4.16057 4.21409 4.27235 4.34186 4.43255 4.44507 4.56143 4.59801 4.63894 4.65605 4.69070 4.78476 4.79809 4.85454 4.86253 4.89878 4.93195 4.98203 5.05074 5.11747 5.22589 5.23499 5.33644 5.39143 5.40748 5.48178 5.81039 5.88504 5.96969 6.09460 6.11310 6.14470 6.45092 7.04609 7.14151 7.51057 8.03208 8.61757 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.014696 B = 0.003503 C = 0.003169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.773268 B = 7990.185461 C = 8832.835604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.509 5.509 3 C 0.032 3.968 4 C 0.108 3.892 5 N -0.450 5.450 6 C -0.348 4.348 7 H 0.069 0.931 8 C 0.001 3.999 9 N -0.893 5.893 10 Si 0.984 3.016 11 H -0.268 1.268 12 H -0.269 1.269 13 H -0.280 1.280 14 C 0.420 3.580 15 O -0.617 6.617 16 C 0.110 3.890 17 C -0.082 4.082 18 C 0.056 3.944 19 N -0.513 5.513 20 C 0.098 3.902 21 C -0.132 4.132 22 C -0.057 4.057 23 C -0.164 4.164 24 C 0.079 3.921 25 N -0.518 5.518 26 C 0.086 3.914 27 C 0.044 3.956 28 C -0.080 4.080 29 H 0.001 0.999 30 H 0.089 0.911 31 H 0.080 0.920 32 H 0.116 0.884 33 H 0.083 0.917 34 H 0.071 0.929 35 H 0.047 0.953 36 H 0.272 0.728 37 H 0.063 0.937 38 H 0.104 0.896 39 H 0.015 0.985 40 H 0.099 0.901 41 H 0.027 0.973 42 H 0.111 0.889 43 H 0.162 0.838 44 H 0.171 0.829 45 H 0.178 0.822 46 H 0.128 0.872 47 H 0.063 0.937 48 H 0.052 0.948 49 H 0.047 0.953 50 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.151 -15.130 -8.476 18.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.232 5.232 3 C -0.096 4.096 4 C -0.017 4.017 5 N -0.168 5.168 6 C -0.476 4.476 7 H 0.086 0.914 8 C -0.201 4.201 9 N -0.531 5.531 10 Si 0.808 3.192 11 H -0.193 1.193 12 H -0.193 1.193 13 H -0.206 1.206 14 C 0.209 3.791 15 O -0.504 6.504 16 C 0.017 3.983 17 C -0.121 4.121 18 C -0.073 4.073 19 N -0.237 5.237 20 C -0.029 4.029 21 C -0.134 4.134 22 C -0.083 4.083 23 C -0.183 4.183 24 C -0.077 4.077 25 N -0.227 5.227 26 C -0.071 4.071 27 C -0.084 4.084 28 C -0.119 4.119 29 H 0.019 0.981 30 H 0.108 0.892 31 H 0.099 0.901 32 H 0.134 0.866 33 H 0.102 0.898 34 H 0.089 0.911 35 H 0.065 0.935 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.123 0.877 39 H 0.033 0.967 40 H 0.117 0.883 41 H 0.045 0.955 42 H 0.129 0.871 43 H 0.180 0.820 44 H 0.189 0.811 45 H 0.195 0.805 46 H 0.146 0.854 47 H 0.081 0.919 48 H 0.070 0.930 49 H 0.065 0.935 50 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 6.593 -15.589 -8.309 18.855 hybrid contribution -0.271 2.075 2.259 3.080 sum 6.322 -13.514 -6.049 16.099 Atomic orbital electron populations 1.22501 0.87468 1.02601 1.00462 1.62877 1.08232 1.13325 1.38728 1.22863 1.00326 0.88217 0.98233 1.21886 1.02017 0.94095 0.83664 1.43501 1.60278 1.06471 1.06535 1.19550 1.35070 1.04583 0.88416 0.91352 1.25995 0.93856 0.98990 1.01260 1.70057 1.25828 1.23418 1.33805 0.85145 0.78688 0.77522 0.77884 1.19267 1.19335 1.20566 1.21284 0.82942 0.82420 0.92491 1.90332 1.58155 1.67929 1.34030 1.21218 0.98247 0.93590 0.85247 1.21470 0.90884 0.99713 0.99995 1.22104 0.98574 0.89443 0.97146 1.62300 1.02277 1.13518 1.45616 1.21036 0.97538 0.90712 0.93643 1.20774 0.97954 0.97061 0.97623 1.21813 0.98668 0.91130 0.96720 1.22518 0.95655 1.00955 0.99155 1.23303 0.97212 0.95061 0.92160 1.67657 1.26483 1.01414 1.27163 1.22579 0.91725 0.96351 0.96475 1.22395 0.88853 0.98344 0.98838 1.21440 0.97422 0.93023 1.00011 0.98062 0.89216 0.90133 0.86550 0.89842 0.91137 0.93497 0.91782 0.91840 0.87716 0.96693 0.88268 0.95481 0.87065 0.82017 0.81140 0.80496 0.85449 0.91855 0.93013 0.93471 0.88621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.60 8.09 127.69 1.03 1.63 16 2 N -0.51 -16.96 4.89 -876.18 -4.28 -21.25 16 3 C 0.03 1.07 5.96 86.24 0.51 1.58 16 4 C 0.11 4.82 3.98 86.47 0.34 5.16 16 5 N -0.45 -23.39 2.78 -638.76 -1.78 -25.17 16 6 C -0.35 -20.15 9.13 84.04 0.77 -19.38 16 7 H 0.07 4.27 7.26 -2.91 -0.02 4.25 16 8 C 0.00 0.06 5.04 84.93 0.43 0.48 16 9 N -0.89 -47.81 10.57 21.66 0.23 -47.58 16 10 Si 0.98 43.44 29.58 68.60 2.03 45.47 16 11 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 12 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 13 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 14 C 0.42 20.43 5.36 87.70 0.47 20.90 16 15 O -0.62 -33.90 11.03 -3.07 -0.03 -33.94 16 16 C 0.11 4.06 0.44 2.75 0.00 4.06 16 17 C -0.08 -2.56 4.82 30.66 0.15 -2.42 16 18 C 0.06 1.74 5.17 86.32 0.45 2.19 16 19 N -0.51 -15.08 4.80 -900.95 -4.32 -19.40 16 20 C 0.10 2.51 5.45 85.56 0.47 2.97 16 21 C -0.13 -3.27 4.14 -19.77 -0.08 -3.35 16 22 C -0.06 -1.06 9.86 22.47 0.22 -0.84 16 23 C -0.16 -2.64 10.11 22.36 0.23 -2.42 16 24 C 0.08 1.65 11.18 84.68 0.95 2.59 16 25 N -0.52 -14.95 10.36 -195.85 -2.03 -16.98 16 26 C 0.09 2.55 8.97 84.67 0.76 3.31 16 27 C 0.04 1.55 4.32 86.32 0.37 1.92 16 28 C -0.08 -2.80 4.04 30.66 0.12 -2.67 16 29 H 0.00 0.03 5.95 -2.39 -0.01 0.01 16 30 H 0.09 2.56 8.14 -2.38 -0.02 2.54 16 31 H 0.08 2.45 6.25 -2.39 -0.01 2.44 16 32 H 0.12 3.18 8.14 -2.39 -0.02 3.16 16 33 H 0.08 2.65 6.27 -2.39 -0.01 2.64 16 34 H 0.07 3.43 5.61 -2.39 -0.01 3.42 16 35 H 0.05 2.21 7.63 -2.39 -0.02 2.20 16 36 H 0.27 13.72 8.31 -92.71 -0.77 12.95 16 37 H 0.06 2.00 6.56 -2.39 -0.02 1.98 16 38 H 0.10 2.79 8.14 -2.39 -0.02 2.77 16 39 H 0.01 0.60 6.21 -2.38 -0.01 0.59 16 40 H 0.10 2.46 8.12 -2.39 -0.02 2.44 16 41 H 0.03 0.80 8.03 -2.39 -0.02 0.78 16 42 H 0.11 2.15 8.10 -2.39 -0.02 2.13 16 43 H 0.16 2.10 8.06 -2.91 -0.02 2.07 16 44 H 0.17 1.43 8.06 -2.91 -0.02 1.41 16 45 H 0.18 2.54 8.06 -2.91 -0.02 2.51 16 46 H 0.13 4.27 8.06 -2.91 -0.02 4.24 16 47 H 0.06 2.17 5.64 -2.39 -0.01 2.15 16 48 H 0.05 2.33 5.04 -2.40 -0.01 2.32 16 49 H 0.05 1.77 6.50 -2.39 -0.02 1.76 16 50 H 0.10 2.89 8.14 -2.39 -0.02 2.87 16 Total: -1.00 -70.55 367.66 -2.05 -72.61 By element: Atomic # 1 Polarization: 29.55 SS G_CDS: 0.95 Total: 30.51 kcal Atomic # 6 Polarization: 8.55 SS G_CDS: 7.19 Total: 15.74 kcal Atomic # 7 Polarization: -118.20 SS G_CDS: -12.19 Total: -130.39 kcal Atomic # 8 Polarization: -33.90 SS G_CDS: -0.03 Total: -33.94 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Total: -70.55 -2.05 -72.61 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096230113.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.609 kcal (2) G-P(sol) polarization free energy of solvation -70.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.606 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds