Wall clock time and date at job start Tue Mar 31 2020 06:19:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31323 * 1 3 3 Si 1.86807 * 120.00252 * 2 1 4 4 H 1.48503 * 109.47249 * 240.00176 * 3 2 1 5 5 H 1.48504 * 109.46898 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.47172 * 119.99723 * 3 2 1 7 7 C 1.39133 * 120.00367 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00603 * 184.76805 * 7 2 1 9 9 N 1.36674 * 119.99548 * 4.77098 * 7 2 1 10 10 C 1.34773 * 119.99797 * 198.41540 * 9 7 2 11 11 O 1.21849 * 119.99887 * 3.98403 * 10 9 7 12 12 C 1.41299 * 119.99707 * 183.97797 * 10 9 7 13 13 C 1.35982 * 119.99578 * 174.59127 * 12 10 9 14 14 C 1.40915 * 120.00379 * 353.47179 * 13 12 10 15 15 C 1.36118 * 120.17344 * 113.02267 * 14 13 12 16 16 C 1.46971 * 117.83677 * 180.64586 * 15 14 13 17 17 C 1.39521 * 121.52911 * 196.43041 * 16 15 14 18 18 C 1.38049 * 119.49066 * 180.14426 * 17 16 15 19 19 Cl 1.73603 * 119.83973 * 179.97438 * 18 17 16 20 20 C 1.38679 * 120.32071 * 359.96462 * 18 17 16 21 21 C 1.38290 * 120.64179 * 0.05330 * 20 18 17 22 22 C 1.38295 * 119.88115 * 359.97438 * 21 20 18 23 23 O 1.35611 * 121.27732 * 179.97438 * 22 21 20 24 24 C 1.42799 * 117.31569 * 145.92613 * 23 22 21 25 25 C 1.46501 * 119.99909 * 18.13521 * 9 7 2 26 26 C 1.52999 * 117.49627 * 128.44696 * 25 9 7 27 27 C 1.52991 * 60.00170 * 252.51506 * 26 25 9 28 28 H 0.97003 * 119.99544 * 359.97438 * 1 2 3 29 29 H 1.08000 * 120.00443 * 354.59798 * 12 10 9 30 30 H 1.08000 * 119.99624 * 173.46162 * 13 12 10 31 31 H 1.07997 * 121.08748 * 0.86111 * 15 14 13 32 32 H 1.08001 * 120.25457 * 0.15554 * 17 16 15 33 33 H 1.08005 * 119.67644 * 180.02562 * 20 18 17 34 34 H 1.08002 * 120.05975 * 179.97438 * 21 20 18 35 35 H 1.08997 * 109.30533 * 288.08429 * 24 23 22 36 36 H 1.09003 * 109.30492 * 168.69236 * 24 23 22 37 37 H 1.08997 * 115.55069 * 274.15790 * 25 9 7 38 38 H 1.09004 * 117.50035 * 0.02562 * 26 25 9 39 39 H 1.08997 * 117.50060 * 145.01889 * 26 25 9 40 40 H 1.09002 * 117.49604 * 252.51268 * 27 26 25 41 41 H 1.08994 * 117.52250 * 107.48484 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3132 0.0000 0.0000 3 14 2.2473 1.6178 0.0000 4 1 3.1011 1.6964 -1.2125 5 1 1.2823 2.7465 0.0006 6 1 3.1010 1.6964 1.2125 7 6 2.0090 -1.2049 -0.0005 8 1 3.0861 -1.2066 0.0772 9 7 1.3291 -2.3864 -0.0995 10 6 1.9248 -3.5391 0.2649 11 8 3.0422 -3.5205 0.7504 12 6 1.2534 -4.7692 0.0841 13 6 1.8945 -5.9389 0.3484 14 6 3.2666 -5.9336 0.6693 15 6 3.6787 -6.2867 1.9176 16 6 5.1204 -6.2490 2.2006 17 6 5.6637 -6.9004 3.3084 18 6 7.0238 -6.8349 3.5358 19 17 7.7093 -7.6415 4.9117 20 6 7.8451 -6.1281 2.6703 21 6 7.3165 -5.4786 1.5698 22 6 5.9563 -5.5323 1.3256 23 8 5.4079 -4.9056 0.2553 24 6 4.2850 -5.5318 -0.3662 25 6 -0.0491 -2.3991 -0.5960 26 6 -0.3813 -3.3666 -1.7337 27 6 -0.2963 -1.8638 -2.0078 28 1 -0.4849 0.8401 0.0004 29 1 0.2311 -4.7804 -0.2640 30 1 1.3519 -6.8721 0.3126 31 1 2.9697 -6.5882 2.6744 32 1 5.0252 -7.4519 3.9826 33 1 8.9078 -6.0840 2.8580 34 1 7.9647 -4.9305 0.9021 35 1 4.6195 -6.4174 -0.9063 36 1 3.8279 -4.8357 -1.0696 37 1 -0.8202 -2.2186 0.1529 38 1 0.4256 -3.9940 -2.1126 39 1 -1.3710 -3.8231 -1.7334 40 1 -1.2303 -1.3315 -2.1878 41 1 0.5663 -1.5018 -2.5670 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096286648.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:05 Heat of formation + Delta-G solvation = 38.450139 kcal Electronic energy + Delta-G solvation = -27505.435225 eV Core-core repulsion = 23572.317471 eV Total energy + Delta-G solvation = -3933.117754 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.092 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.48300 -39.17914 -37.66360 -36.50232 -36.05690 -34.85665 -33.19784 -31.94707 -31.21822 -30.03056 -29.46461 -25.85879 -25.57336 -23.82465 -22.52662 -22.11357 -21.52541 -20.99801 -19.04300 -17.90270 -17.54216 -17.08573 -16.63513 -16.19876 -15.57659 -15.12903 -14.94508 -14.57694 -14.33604 -14.16349 -13.64610 -13.59043 -13.45295 -13.17245 -13.02205 -12.83274 -12.64626 -12.23851 -11.89224 -11.68393 -11.52100 -11.23787 -11.18352 -11.08320 -10.87851 -10.80183 -10.49370 -10.43007 -10.20791 -9.93223 -9.78017 -9.42149 -8.98195 -8.80428 -8.53361 -8.18529 -7.84322 -7.29740 -6.39819 -3.88510 0.84970 1.30680 1.70898 2.17338 2.57359 3.16730 3.18915 3.23497 3.62820 3.85079 4.04430 4.34088 4.63311 4.78078 4.79687 4.86845 5.02848 5.14201 5.15437 5.27470 5.39458 5.52381 5.64236 5.67966 5.73728 5.82299 5.93232 5.94897 6.00598 6.09165 6.17498 6.20258 6.25084 6.32942 6.56999 6.58174 6.70307 6.75470 6.87386 6.90521 7.02271 7.17641 7.44781 7.66579 8.01614 8.41912 9.12049 9.32913 9.94532 10.59352 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.015207 B = 0.002991 C = 0.002691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1840.777353 B = 9360.309493 C =10401.657483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.034 3.966 3 Si 0.927 3.073 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.294 4.294 8 H 0.104 0.896 9 N -0.405 5.405 10 C 0.446 3.554 11 O -0.571 6.571 12 C -0.151 4.151 13 C -0.110 4.110 14 C -0.054 4.054 15 C -0.131 4.131 16 C -0.093 4.093 17 C -0.075 4.075 18 C -0.067 4.067 19 Cl -0.083 7.083 20 C -0.086 4.086 21 C -0.139 4.139 22 C 0.143 3.857 23 O -0.285 6.285 24 C 0.127 3.873 25 C 0.138 3.862 26 C -0.231 4.231 27 C -0.138 4.138 28 H 0.270 0.730 29 H 0.130 0.870 30 H 0.128 0.872 31 H 0.128 0.872 32 H 0.134 0.866 33 H 0.134 0.866 34 H 0.138 0.862 35 H 0.056 0.944 36 H 0.112 0.888 37 H 0.112 0.888 38 H 0.087 0.913 39 H 0.089 0.911 40 H 0.085 0.915 41 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.933 -12.768 0.087 13.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.171 4.171 3 Si 0.754 3.246 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.423 4.423 8 H 0.122 0.878 9 N -0.121 5.121 10 C 0.240 3.760 11 O -0.458 6.458 12 C -0.172 4.172 13 C -0.132 4.132 14 C -0.055 4.055 15 C -0.149 4.149 16 C -0.094 4.094 17 C -0.094 4.094 18 C -0.094 4.094 19 Cl -0.054 7.054 20 C -0.105 4.105 21 C -0.157 4.157 22 C 0.096 3.904 23 O -0.198 6.198 24 C 0.053 3.947 25 C 0.033 3.967 26 C -0.269 4.269 27 C -0.176 4.176 28 H 0.080 0.920 29 H 0.147 0.853 30 H 0.145 0.855 31 H 0.146 0.854 32 H 0.152 0.848 33 H 0.152 0.848 34 H 0.156 0.844 35 H 0.073 0.927 36 H 0.130 0.870 37 H 0.130 0.870 38 H 0.105 0.895 39 H 0.107 0.893 40 H 0.104 0.896 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 5.411 -12.400 0.325 13.533 hybrid contribution -0.178 0.920 0.230 0.964 sum 5.233 -11.481 0.555 12.629 Atomic orbital electron populations 1.69877 1.05912 1.27650 1.46813 1.25360 0.95577 0.99758 0.96400 0.85971 0.78993 0.80398 0.79285 1.19817 1.20843 1.19695 1.19707 0.92975 0.82032 1.47540 0.87838 1.43232 1.10604 1.06276 1.52021 1.16751 0.88502 0.84313 0.86440 1.90790 1.20039 1.86056 1.48955 1.22915 1.01285 0.93418 0.99574 1.20818 0.93126 0.97627 1.01593 1.20191 0.94800 0.94474 0.96006 1.21655 0.91977 1.05122 0.96165 1.19069 0.94033 1.00890 0.95407 1.20845 0.92835 0.99015 0.96698 1.20624 0.93469 1.02795 0.92511 1.98339 1.85158 1.78824 1.43088 1.20814 0.99744 0.96633 0.93280 1.20424 0.92306 1.03297 0.99706 1.19255 0.91535 0.91675 0.87930 1.86027 1.44704 1.47517 1.41520 1.21590 0.83407 0.97152 0.92578 1.21160 0.85886 0.99326 0.90355 1.23705 1.01771 0.94477 1.06983 1.22706 1.02037 0.92681 1.00196 0.91978 0.85261 0.85485 0.85432 0.84794 0.84790 0.84377 0.92655 0.86976 0.87015 0.89501 0.89270 0.89608 0.89715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -21.49 9.77 55.51 0.54 -20.95 16 2 C 0.03 0.86 5.16 -17.44 -0.09 0.77 16 3 Si 0.93 20.26 29.56 -169.99 -5.02 15.24 16 4 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 5 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 6 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 7 C -0.29 -7.85 9.23 -15.06 -0.14 -7.99 16 8 H 0.10 2.94 7.34 -52.49 -0.39 2.55 16 9 N -0.40 -9.85 2.93 -111.05 -0.32 -10.17 16 10 C 0.45 10.32 6.71 -15.10 -0.10 10.22 16 11 O -0.57 -14.73 11.96 -7.55 -0.09 -14.82 16 12 C -0.15 -2.73 8.00 -39.23 -0.31 -3.05 16 13 C -0.11 -1.72 9.40 -39.38 -0.37 -2.09 16 14 C -0.05 -0.92 3.44 -104.38 -0.36 -1.28 16 15 C -0.13 -2.17 9.79 -36.81 -0.36 -2.53 16 16 C -0.09 -1.52 5.80 -104.97 -0.61 -2.13 16 17 C -0.08 -1.06 9.64 -39.17 -0.38 -1.43 16 18 C -0.07 -0.89 6.32 -39.49 -0.25 -1.14 16 19 Cl -0.08 -0.96 28.94 -51.86 -1.50 -2.46 16 20 C -0.09 -1.09 9.80 -39.40 -0.39 -1.48 16 21 C -0.14 -1.98 10.01 -39.54 -0.40 -2.38 16 22 C 0.14 2.45 6.47 -38.65 -0.25 2.20 16 23 O -0.29 -5.48 9.84 -31.14 -0.31 -5.79 16 24 C 0.13 2.18 5.76 36.00 0.21 2.39 16 25 C 0.14 2.92 3.56 -67.93 -0.24 2.68 16 26 C -0.23 -3.87 7.84 -26.74 -0.21 -4.08 16 27 C -0.14 -2.69 8.75 -26.74 -0.23 -2.92 16 28 H 0.27 6.42 8.31 -40.82 -0.34 6.08 16 29 H 0.13 2.07 5.17 -52.49 -0.27 1.80 16 30 H 0.13 1.52 8.06 -52.49 -0.42 1.10 16 31 H 0.13 1.89 8.06 -52.49 -0.42 1.47 16 32 H 0.13 1.62 8.06 -52.49 -0.42 1.19 16 33 H 0.13 1.35 8.06 -52.48 -0.42 0.93 16 34 H 0.14 1.72 8.06 -52.49 -0.42 1.30 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.11 2.06 7.03 -51.93 -0.36 1.70 16 37 H 0.11 2.50 7.71 -51.93 -0.40 2.10 16 38 H 0.09 1.44 7.12 -51.93 -0.37 1.07 16 39 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 40 H 0.09 1.58 8.14 -51.93 -0.42 1.16 16 41 H 0.08 1.78 8.14 -51.93 -0.42 1.36 16 LS Contribution 355.52 15.07 5.36 5.36 Total: -1.00 -29.13 355.52 -10.56 -39.69 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: -4.73 Total: 8.15 kcal Atomic # 6 Polarization: -9.77 SS G_CDS: -4.48 Total: -14.25 kcal Atomic # 7 Polarization: -31.34 SS G_CDS: 0.22 Total: -31.12 kcal Atomic # 8 Polarization: -20.21 SS G_CDS: -0.40 Total: -20.61 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Atomic # 17 Polarization: -0.96 SS G_CDS: -1.50 Total: -2.46 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -29.13 -10.56 -39.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096286648.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.142 kcal (2) G-P(sol) polarization free energy of solvation -29.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.691 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds