Wall clock time and date at job start Tue Mar 31 2020 07:10:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42900 * 109.46976 * 2 1 4 4 C 1.35998 * 117.00055 * 179.97438 * 3 2 1 5 5 C 1.38563 * 119.98843 * 359.97438 * 4 3 2 6 6 C 1.38533 * 120.38764 * 179.97438 * 5 4 3 7 7 C 1.37746 * 120.36081 * 359.97438 * 6 5 4 8 8 C 1.40010 * 119.97621 * 0.02562 * 7 6 5 9 9 C 1.46907 * 120.19408 * 179.97438 * 8 7 6 10 10 C 1.35147 * 119.99765 * 310.18667 * 9 8 7 11 11 C 1.41785 * 120.00270 * 349.70418 * 10 9 8 12 12 O 1.21776 * 120.00033 * 353.26280 * 11 10 9 13 13 N 1.34779 * 120.00061 * 173.25830 * 11 10 9 14 14 C 1.36752 * 119.99699 * 180.02562 * 13 11 10 15 15 H 1.07999 * 120.00641 * 359.97438 * 14 13 11 16 16 C 1.39101 * 119.99709 * 180.02562 * 14 13 11 17 17 N 1.31344 * 119.99884 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 119.99976 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47142 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.47046 * 119.99601 * 18 16 14 21 21 H 1.48498 * 109.47180 * 239.99780 * 18 16 14 22 22 C 1.39017 * 119.99376 * 179.72724 * 4 3 2 23 23 O 1.35789 * 120.17877 * 359.97438 * 22 4 3 24 24 C 1.42895 * 117.00182 * 89.99895 * 23 22 4 25 25 C 1.54265 * 110.03482 * 267.17188 * 24 23 22 26 26 C 1.54895 * 104.19345 * 217.10495 * 25 24 23 27 27 C 1.54893 * 102.75014 * 37.93734 * 26 25 24 28 28 C 1.53873 * 110.03376 * 149.99839 * 24 23 22 29 29 H 1.08996 * 109.47625 * 299.99741 * 1 2 3 30 30 H 1.09004 * 109.47126 * 60.00010 * 1 2 3 31 31 H 1.09002 * 109.47042 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46623 * 120.00134 * 2 1 3 33 33 H 1.08994 * 109.47135 * 240.00089 * 2 1 3 34 34 H 1.07998 * 119.81032 * 0.02562 * 5 4 3 35 35 H 1.08000 * 119.81871 * 179.97438 * 6 5 4 36 36 H 1.08000 * 120.01349 * 179.97438 * 7 6 5 37 37 H 1.08002 * 119.99864 * 130.19141 * 9 8 7 38 38 H 1.08003 * 119.99757 * 169.70887 * 10 9 8 39 39 H 0.96997 * 119.99909 * 0.02562 * 13 11 10 40 40 H 0.96995 * 119.99771 * 180.02562 * 17 16 14 41 41 H 1.09005 * 110.01396 * 28.61070 * 24 23 22 42 42 H 1.09003 * 110.48486 * 335.77711 * 25 24 23 43 43 H 1.08992 * 110.48717 * 98.42553 * 25 24 23 44 44 H 1.09005 * 110.75510 * 279.62237 * 26 25 24 45 45 H 1.08998 * 110.91529 * 156.33177 * 26 25 24 46 46 H 1.08997 * 110.48798 * 203.37890 * 27 26 25 47 47 H 1.09002 * 110.59183 * 80.79366 * 27 26 25 48 48 H 1.09004 * 110.03549 * 238.57345 * 28 24 23 49 49 H 1.09005 * 110.03020 * 0.02562 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3545 1.5255 0.0005 5 6 4.1984 0.4265 0.0016 6 6 5.5730 0.5985 0.0016 7 6 6.1163 1.8643 0.0001 8 6 5.2777 2.9855 -0.0010 9 6 5.8520 4.3376 -0.0021 10 6 6.8112 4.6651 0.8919 11 6 7.1098 3.7876 1.9648 12 8 6.4223 2.8002 2.1532 13 7 8.1545 4.0461 2.7761 14 6 8.4427 3.1994 3.8106 15 1 7.8329 2.3238 3.9778 16 6 9.5206 3.4665 4.6482 17 7 10.2618 4.5316 4.4453 18 14 9.9147 2.3096 6.0609 19 1 8.9366 1.1923 6.0733 20 1 11.2857 1.7659 5.8876 21 1 9.8349 3.0511 7.3450 22 6 3.8857 2.8102 -0.0052 23 8 3.0618 3.8895 -0.0118 24 6 2.6662 4.4116 1.2582 25 6 1.3307 3.7768 1.6978 26 6 0.5741 4.9318 2.3998 27 6 0.9416 6.1596 1.5299 28 6 2.4188 5.9265 1.1515 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5139 0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 3.7822 -0.5700 0.0016 35 1 6.2223 -0.2646 0.0029 36 1 7.1888 1.9919 0.0005 37 1 5.5076 5.0700 -0.7173 38 1 7.3503 5.5953 0.7891 39 1 8.7019 4.8327 2.6262 40 1 11.0137 4.7176 5.0292 41 1 3.4383 4.2108 2.0010 42 1 0.7714 3.4259 0.8306 43 1 1.5087 2.9581 2.3950 44 1 0.9301 5.0620 3.4218 45 1 -0.5017 4.7570 2.3864 46 1 0.8356 7.0797 2.1046 47 1 0.3197 6.1957 0.6355 48 1 3.0702 6.4609 1.8431 49 1 2.6001 6.2635 0.1308 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096295066.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:40 Heat of formation + Delta-G solvation = -72.768563 kcal Electronic energy + Delta-G solvation = -31279.553223 eV Core-core repulsion = 27172.569689 eV Total energy + Delta-G solvation = -4106.983534 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.23227 -38.63850 -38.49214 -37.04301 -35.60262 -34.25433 -32.73394 -31.70226 -31.36116 -29.22772 -28.70332 -28.54609 -27.27368 -25.51840 -24.02982 -22.48490 -21.96892 -20.83682 -20.51027 -20.03173 -18.75780 -18.10384 -17.49219 -16.96602 -16.22383 -16.08344 -15.75150 -15.50322 -15.17434 -14.72709 -14.33928 -14.10473 -13.81203 -13.62814 -13.48342 -13.23865 -13.17653 -12.90164 -12.85256 -12.67983 -12.34001 -12.19353 -11.79799 -11.63257 -11.47770 -11.35886 -11.21198 -11.10772 -11.05895 -10.96348 -10.82823 -10.56640 -10.55035 -10.41962 -10.34210 -10.27180 -9.68763 -9.43528 -9.09149 -8.46550 -8.09715 -7.75649 -7.27625 -6.59413 -3.87566 1.27199 1.86766 2.36000 3.12529 3.19054 3.26284 3.39669 3.84671 4.08066 4.38173 4.48382 4.72114 4.74637 4.88968 4.93914 5.01657 5.15469 5.19074 5.21908 5.29169 5.35742 5.46225 5.51180 5.56570 5.62887 5.63354 5.71793 5.72220 5.79873 5.82026 5.84529 5.90158 5.94312 5.95727 6.10954 6.12875 6.14484 6.26170 6.36727 6.37669 6.49549 6.61970 6.72630 6.83949 6.96854 7.14382 7.20087 7.39929 7.55460 7.97995 8.14567 8.52336 9.07164 9.44230 10.04230 10.57174 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.010528 B = 0.003445 C = 0.003072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2658.983173 B = 8125.561194 C = 9111.437425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.054 3.946 3 O -0.307 6.307 4 C 0.100 3.900 5 C -0.204 4.204 6 C -0.097 4.097 7 C -0.061 4.061 8 C -0.003 4.003 9 C -0.080 4.080 10 C -0.164 4.164 11 C 0.443 3.557 12 O -0.587 6.587 13 N -0.542 5.542 14 C -0.287 4.287 15 H 0.108 0.892 16 C 0.022 3.978 17 N -0.887 5.887 18 Si 0.931 3.069 19 H -0.266 1.266 20 H -0.279 1.279 21 H -0.280 1.280 22 C 0.067 3.933 23 O -0.316 6.316 24 C 0.090 3.910 25 C -0.136 4.136 26 C -0.125 4.125 27 C -0.121 4.121 28 C -0.122 4.122 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.073 0.927 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.120 0.880 35 H 0.118 0.882 36 H 0.119 0.881 37 H 0.126 0.874 38 H 0.117 0.883 39 H 0.392 0.608 40 H 0.275 0.725 41 H 0.068 0.932 42 H 0.081 0.919 43 H 0.062 0.938 44 H 0.065 0.935 45 H 0.064 0.936 46 H 0.064 0.936 47 H 0.065 0.935 48 H 0.072 0.928 49 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.198 -1.908 -8.699 17.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.022 4.022 3 O -0.221 6.221 4 C 0.054 3.946 5 C -0.223 4.223 6 C -0.115 4.115 7 C -0.079 4.079 8 C -0.004 4.004 9 C -0.102 4.102 10 C -0.186 4.186 11 C 0.234 3.766 12 O -0.475 6.475 13 N -0.175 5.175 14 C -0.417 4.417 15 H 0.126 0.874 16 C -0.182 4.182 17 N -0.527 5.527 18 Si 0.758 3.242 19 H -0.190 1.190 20 H -0.205 1.205 21 H -0.206 1.206 22 C 0.023 3.977 23 O -0.233 6.233 24 C 0.035 3.965 25 C -0.174 4.174 26 C -0.163 4.163 27 C -0.158 4.158 28 C -0.160 4.160 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.092 0.908 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.138 0.862 35 H 0.136 0.864 36 H 0.137 0.863 37 H 0.144 0.856 38 H 0.135 0.865 39 H 0.226 0.774 40 H 0.085 0.915 41 H 0.087 0.913 42 H 0.099 0.901 43 H 0.081 0.919 44 H 0.084 0.916 45 H 0.083 0.917 46 H 0.082 0.918 47 H 0.084 0.916 48 H 0.091 0.909 49 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -15.659 -2.238 -8.560 17.985 hybrid contribution 0.978 -0.338 1.061 1.482 sum -14.681 -2.576 -7.499 16.685 Atomic orbital electron populations 1.21742 0.93207 1.02355 1.03326 1.22682 0.95431 0.83071 1.01022 1.86121 1.18918 1.27864 1.89205 1.19049 0.82218 0.93368 0.99918 1.20961 0.94264 0.96933 1.10126 1.20655 0.93891 0.97171 0.99797 1.20850 0.99070 0.90893 0.97124 1.18835 0.90696 0.93902 0.96934 1.21833 0.95668 0.94028 0.98659 1.22282 0.98922 1.00805 0.96567 1.16809 0.84784 0.88786 0.86178 1.90739 1.51745 1.30353 1.74707 1.42078 1.25414 1.24184 1.25820 1.19878 1.11329 1.05983 1.04555 0.87437 1.25402 0.96029 0.97282 0.99470 1.69592 1.18131 1.25863 1.39092 0.85767 0.78501 0.79917 0.80053 1.19023 1.20529 1.20556 1.17901 0.87863 0.83917 1.08054 1.86022 1.64674 1.43735 1.28881 1.23016 0.95842 0.92781 0.84898 1.22802 0.96406 0.97521 1.00688 1.22456 0.99737 0.95133 0.98946 1.22312 0.96014 0.97934 0.99555 1.22219 0.96656 0.94392 1.02689 0.91680 0.91700 0.90823 0.92454 0.92507 0.86241 0.86385 0.86325 0.85636 0.86547 0.77418 0.91514 0.91339 0.90058 0.91911 0.91603 0.91696 0.91759 0.91584 0.90950 0.90479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 10.28 37.16 0.38 -0.94 16 2 C 0.05 0.61 5.46 37.16 0.20 0.81 16 3 O -0.31 -4.72 8.61 -34.34 -0.30 -5.02 16 4 C 0.10 1.73 6.69 -39.17 -0.26 1.47 16 5 C -0.20 -3.32 9.03 -39.35 -0.36 -3.67 16 6 C -0.10 -1.67 10.02 -39.65 -0.40 -2.07 16 7 C -0.06 -1.16 6.82 -39.10 -0.27 -1.43 16 8 C 0.00 -0.06 4.26 -104.95 -0.45 -0.50 16 9 C -0.08 -1.41 9.32 -37.17 -0.35 -1.75 16 10 C -0.16 -3.10 9.74 -39.33 -0.38 -3.48 16 11 C 0.44 10.37 6.81 -14.90 -0.10 10.27 16 12 O -0.59 -15.20 11.89 5.12 0.06 -15.13 16 13 N -0.54 -13.50 5.26 -13.56 -0.07 -13.57 16 14 C -0.29 -7.76 9.68 -15.04 -0.15 -7.91 16 15 H 0.11 3.06 7.15 -52.49 -0.38 2.69 16 16 C 0.02 0.56 5.50 -17.44 -0.10 0.47 16 17 N -0.89 -23.38 13.05 55.50 0.72 -22.66 16 18 Si 0.93 20.42 29.55 -169.99 -5.02 15.39 16 19 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 20 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 21 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 22 C 0.07 1.25 5.62 -38.52 -0.22 1.03 16 23 O -0.32 -5.55 8.85 -33.68 -0.30 -5.85 16 24 C 0.09 1.45 3.45 -25.61 -0.09 1.36 16 25 C -0.14 -1.93 5.81 -25.07 -0.15 -2.08 16 26 C -0.13 -1.45 6.91 -24.73 -0.17 -1.62 16 27 C -0.12 -1.34 6.83 -25.07 -0.17 -1.51 16 28 C -0.12 -1.61 6.61 -25.61 -0.17 -1.78 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.64 7.65 -51.93 -0.40 0.24 16 33 H 0.06 0.59 7.66 -51.93 -0.40 0.19 16 34 H 0.12 1.60 6.27 -52.49 -0.33 1.27 16 35 H 0.12 1.76 8.06 -52.49 -0.42 1.34 16 36 H 0.12 2.33 7.56 -52.49 -0.40 1.93 16 37 H 0.13 1.87 8.06 -52.49 -0.42 1.45 16 38 H 0.12 1.86 8.06 -52.48 -0.42 1.44 16 39 H 0.39 9.39 7.85 -40.82 -0.32 9.07 16 40 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 41 H 0.07 1.30 7.91 -51.93 -0.41 0.89 16 42 H 0.08 1.18 7.54 -51.93 -0.39 0.79 16 43 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 44 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 48 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 49 H 0.08 1.00 7.96 -51.93 -0.41 0.58 16 LS Contribution 400.69 15.07 6.04 6.04 Total: -1.00 -30.36 400.69 -9.68 -40.04 By element: Atomic # 1 Polarization: 21.72 SS G_CDS: -7.64 Total: 14.08 kcal Atomic # 6 Polarization: -10.15 SS G_CDS: -3.18 Total: -13.32 kcal Atomic # 7 Polarization: -36.88 SS G_CDS: 0.65 Total: -36.22 kcal Atomic # 8 Polarization: -25.47 SS G_CDS: -0.53 Total: -26.00 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -30.36 -9.68 -40.04 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096295066.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.728 kcal (2) G-P(sol) polarization free energy of solvation -30.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds