Wall clock time and date at job start Tue Mar 31 2020 06:26:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.39728 * 125.77572 * 2 1 4 4 C 1.36169 * 107.85911 * 180.14879 * 3 2 1 5 5 N 1.39333 * 126.26340 * 179.90667 * 4 3 2 6 6 C 1.34774 * 120.00284 * 359.68706 * 5 4 3 7 7 O 1.21716 * 120.00277 * 359.97438 * 6 5 4 8 8 C 1.46383 * 120.00012 * 180.02562 * 6 5 4 9 9 C 1.34835 * 120.00123 * 187.33508 * 8 6 5 10 10 C 1.47203 * 119.99799 * 10.14961 * 9 8 6 11 11 C 1.39860 * 120.16511 * 43.95242 * 10 9 8 12 12 C 1.37879 * 119.85232 * 180.25590 * 11 10 9 13 13 C 1.38403 * 120.18493 * 359.76717 * 12 11 10 14 14 C 1.38494 * 120.33342 * 0.02562 * 13 12 11 15 15 Cl 1.73602 * 119.92805 * 179.97438 * 14 13 12 16 16 C 1.38036 * 120.14518 * 0.02562 * 14 13 12 17 17 N 1.35815 * 107.46514 * 359.63863 * 4 3 2 18 18 C 1.46496 * 126.09190 * 180.20461 * 17 4 3 19 19 C 1.50699 * 109.47229 * 90.00229 * 18 17 4 20 20 H 1.08001 * 119.99553 * 0.02562 * 19 18 17 21 21 C 1.37876 * 120.00133 * 180.02562 * 19 18 17 22 22 N 1.31517 * 120.00178 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00086 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47379 * 89.99520 * 23 21 19 25 25 H 1.48495 * 109.47231 * 209.99713 * 23 21 19 26 26 H 1.48503 * 109.46764 * 329.99742 * 23 21 19 27 27 N 1.30828 * 125.78002 * 179.74721 * 2 1 3 28 28 H 1.09002 * 109.46845 * 270.23213 * 1 2 3 29 29 H 1.08999 * 109.47562 * 30.22731 * 1 2 3 30 30 H 1.08998 * 109.47508 * 150.23179 * 1 2 3 31 31 H 1.07998 * 126.07137 * 0.04902 * 3 2 1 32 32 H 0.97000 * 119.99893 * 179.68846 * 5 4 3 33 33 H 1.07995 * 119.99825 * 7.33671 * 8 6 5 34 34 H 1.07994 * 120.00363 * 190.15272 * 9 8 6 35 35 H 1.07994 * 120.07348 * 359.97438 * 11 10 9 36 36 H 1.07997 * 119.90381 * 179.74764 * 12 11 10 37 37 H 1.07997 * 119.83239 * 179.97438 * 13 12 11 38 38 H 1.07997 * 120.09713 * 179.97438 * 16 14 13 39 39 H 1.09000 * 109.47408 * 210.00756 * 18 17 4 40 40 H 1.09003 * 109.47270 * 330.00395 * 18 17 4 41 41 H 0.96996 * 119.99973 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3238 1.1336 0.0000 4 6 3.6195 0.7147 -0.0034 5 7 4.7492 1.5302 -0.0063 6 6 4.6126 2.8710 -0.0124 7 8 3.5023 3.3696 -0.0157 8 6 5.7996 3.7276 -0.0161 9 6 5.6686 5.0619 0.1270 10 6 4.3683 5.6370 0.5085 11 6 3.6098 5.0468 1.5245 12 6 2.3903 5.5877 1.8731 13 6 1.9180 6.7150 1.2238 14 6 2.6648 7.3082 0.2195 15 17 2.0619 8.7216 -0.5884 16 6 3.8869 6.7775 -0.1412 17 7 3.6088 -0.6434 0.0028 18 6 4.7857 -1.5156 0.0061 19 6 5.1900 -1.8084 1.4281 20 1 4.6262 -1.3871 2.2473 21 6 6.2795 -2.6139 1.6831 22 7 6.9657 -3.1273 0.6855 23 14 6.7801 -2.9774 3.4457 24 1 6.0797 -4.1989 3.9175 25 1 8.2480 -3.1929 3.5090 26 1 6.4106 -1.8291 4.3120 27 7 2.2719 -1.0614 0.0047 28 1 -0.3633 0.0042 1.0277 29 1 -0.3634 0.8879 -0.5173 30 1 -0.3634 -0.8920 -0.5102 31 1 1.9873 2.1599 0.0007 32 1 5.6341 1.1328 -0.0041 33 1 6.7803 3.2908 -0.1334 34 1 6.5174 5.7087 -0.0384 35 1 3.9762 4.1666 2.0318 36 1 1.8020 5.1302 2.6547 37 1 0.9619 7.1337 1.5011 38 1 4.4684 7.2405 -0.9247 39 1 4.5476 -2.4493 -0.5035 40 1 5.6074 -1.0192 -0.5103 41 1 7.7319 -3.6943 0.8650 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096310848.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:25 Heat of formation + Delta-G solvation = 86.248524 kcal Electronic energy + Delta-G solvation = -26795.305651 eV Core-core repulsion = 22896.553342 eV Total energy + Delta-G solvation = -3898.752309 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.098 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.92466 -39.85331 -38.67719 -36.58412 -34.82311 -34.03459 -33.72721 -32.08353 -30.90714 -30.01884 -29.11161 -28.15925 -26.05119 -24.57024 -22.91968 -22.68902 -22.17818 -20.32117 -19.71029 -18.89944 -17.50338 -16.89801 -16.54599 -16.49438 -15.68369 -15.48504 -15.03802 -14.82694 -14.44104 -14.22198 -14.00585 -13.81057 -13.71991 -13.39800 -12.96712 -12.80887 -12.71664 -12.52037 -12.09578 -11.80886 -11.75821 -11.70621 -11.57277 -11.46996 -11.10582 -10.97505 -10.91624 -10.41602 -10.35499 -10.09862 -9.92142 -9.84058 -9.53762 -8.89943 -8.75051 -8.23113 -7.91288 -7.44298 -6.36287 -4.44921 0.48248 1.22249 1.59910 2.02915 2.59810 2.87142 3.14284 3.21304 3.24496 3.31206 3.63910 3.67194 3.80214 4.21710 4.43700 4.63704 4.76755 4.95324 4.97073 5.08698 5.13617 5.31605 5.34777 5.56029 5.60644 5.71000 5.85244 5.92060 6.02015 6.13112 6.15099 6.17545 6.25352 6.30115 6.41120 6.44555 6.66706 6.71810 6.81692 7.02288 7.50351 7.56118 7.61506 7.77061 7.89866 8.29331 8.59613 8.68875 9.22821 10.70827 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.013786 B = 0.002791 C = 0.002519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2030.609787 B =10029.394731 C =11112.566456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.049 3.951 3 C -0.291 4.291 4 C 0.300 3.700 5 N -0.632 5.632 6 C 0.541 3.459 7 O -0.504 6.504 8 C -0.196 4.196 9 C -0.025 4.025 10 C -0.060 4.060 11 C -0.029 4.029 12 C -0.117 4.117 13 C -0.098 4.098 14 C -0.048 4.048 15 Cl -0.082 7.082 16 C -0.091 4.091 17 N -0.347 5.347 18 C 0.257 3.743 19 C -0.540 4.540 20 H 0.064 0.936 21 C 0.067 3.933 22 N -0.890 5.890 23 Si 0.906 3.094 24 H -0.276 1.276 25 H -0.283 1.283 26 H -0.272 1.272 27 N -0.284 5.284 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.162 0.838 32 H 0.416 0.584 33 H 0.141 0.859 34 H 0.142 0.858 35 H 0.122 0.878 36 H 0.130 0.870 37 H 0.128 0.872 38 H 0.130 0.870 39 H 0.056 0.944 40 H 0.044 0.956 41 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.566 19.984 -0.932 20.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.116 4.116 3 C -0.323 4.323 4 C 0.077 3.923 5 N -0.278 5.278 6 C 0.331 3.669 7 O -0.380 6.380 8 C -0.217 4.217 9 C -0.044 4.044 10 C -0.060 4.060 11 C -0.048 4.048 12 C -0.135 4.135 13 C -0.117 4.117 14 C -0.074 4.074 15 Cl -0.053 7.053 16 C -0.110 4.110 17 N -0.133 5.133 18 C 0.139 3.861 19 C -0.578 4.578 20 H 0.083 0.917 21 C -0.137 4.137 22 N -0.528 5.528 23 Si 0.733 3.267 24 H -0.202 1.202 25 H -0.208 1.208 26 H -0.197 1.197 27 N -0.110 5.110 28 H 0.086 0.914 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.179 0.821 32 H 0.253 0.747 33 H 0.159 0.841 34 H 0.160 0.840 35 H 0.140 0.860 36 H 0.148 0.852 37 H 0.146 0.854 38 H 0.148 0.852 39 H 0.074 0.926 40 H 0.062 0.938 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.043 18.988 -1.063 19.443 hybrid contribution 1.047 0.177 0.755 1.303 sum -2.996 19.165 -0.308 19.400 Atomic orbital electron populations 1.20014 0.87675 1.02304 1.02094 1.22013 0.96488 0.91085 1.02000 1.21275 0.89012 1.00398 1.21569 1.18036 0.88033 0.83273 1.02910 1.42752 1.08308 1.05650 1.71051 1.18390 0.90239 0.81059 0.77259 1.90822 1.26459 1.72972 1.47762 1.22924 0.98137 0.94051 1.06619 1.22321 0.95754 0.94265 0.92095 1.18778 0.95058 0.94999 0.97205 1.21237 0.93412 0.95805 0.94313 1.20932 0.96319 0.95685 1.00603 1.21072 0.99515 0.96076 0.95027 1.20641 0.96270 0.92053 0.98471 1.98353 1.87984 1.39834 1.79130 1.20996 0.94780 0.95388 0.99822 1.49503 1.06420 1.02143 1.55191 1.19608 0.77856 0.89724 0.98869 1.21337 1.13271 1.31908 0.91332 0.91737 1.24938 0.95692 0.94876 0.98188 1.69916 1.19244 1.32476 1.31136 0.86356 0.77639 0.79100 0.83618 1.20201 1.20836 1.19680 1.77331 0.86222 1.21889 1.25530 0.91367 0.91198 0.91592 0.82056 0.74689 0.84083 0.84034 0.86020 0.85207 0.85378 0.85186 0.92605 0.93846 0.92146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.92 10.44 36.00 0.38 -0.54 16 2 C 0.05 0.97 7.20 -82.47 -0.59 0.38 16 3 C -0.29 -5.79 9.58 -39.77 -0.38 -6.17 16 4 C 0.30 6.14 7.68 -152.78 -1.17 4.97 16 5 N -0.63 -10.56 5.41 -12.62 -0.07 -10.63 16 6 C 0.54 7.92 6.74 -12.98 -0.09 7.84 16 7 O -0.50 -8.26 9.23 5.17 0.05 -8.21 16 8 C -0.20 -2.05 9.92 -37.51 -0.37 -2.42 16 9 C -0.02 -0.23 9.81 -37.15 -0.36 -0.59 16 10 C -0.06 -0.67 4.55 -105.06 -0.48 -1.15 16 11 C -0.03 -0.36 6.58 -39.11 -0.26 -0.62 16 12 C -0.12 -1.32 10.03 -39.65 -0.40 -1.72 16 13 C -0.10 -1.06 9.82 -39.43 -0.39 -1.44 16 14 C -0.05 -0.53 6.31 -39.56 -0.25 -0.78 16 15 Cl -0.08 -0.83 28.95 -51.86 -1.50 -2.33 16 16 C -0.09 -0.98 9.57 -39.07 -0.37 -1.35 16 17 N -0.35 -8.02 3.62 -61.46 -0.22 -8.24 16 18 C 0.26 6.35 6.02 -5.20 -0.03 6.32 16 19 C -0.54 -14.31 9.39 -34.44 -0.32 -14.63 16 20 H 0.06 1.78 7.81 -52.49 -0.41 1.37 16 21 C 0.07 1.75 5.46 -17.82 -0.10 1.66 16 22 N -0.89 -24.07 13.29 55.43 0.74 -23.33 16 23 Si 0.91 20.39 29.54 -169.99 -5.02 15.37 16 24 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 25 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 26 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 27 N -0.28 -6.58 12.56 33.64 0.42 -6.15 16 28 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.16 3.11 5.82 -52.49 -0.31 2.80 16 32 H 0.42 6.44 7.97 -40.82 -0.33 6.11 16 33 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 34 H 0.14 0.82 8.06 -52.49 -0.42 0.40 16 35 H 0.12 1.57 7.00 -52.49 -0.37 1.20 16 36 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 37 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 38 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 39 H 0.06 1.49 8.14 -51.93 -0.42 1.07 16 40 H 0.04 1.03 7.52 -51.93 -0.39 0.64 16 41 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 LS Contribution 370.31 15.07 5.58 5.58 Total: -1.00 -31.03 370.31 -9.96 -40.99 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: -4.74 Total: 7.21 kcal Atomic # 6 Polarization: -5.06 SS G_CDS: -5.19 Total: -10.26 kcal Atomic # 7 Polarization: -49.22 SS G_CDS: 0.87 Total: -48.35 kcal Atomic # 8 Polarization: -8.26 SS G_CDS: 0.05 Total: -8.21 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Atomic # 17 Polarization: -0.83 SS G_CDS: -1.50 Total: -2.33 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.03 -9.96 -40.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096310848.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.239 kcal (2) G-P(sol) polarization free energy of solvation -31.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.990 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds