Wall clock time and date at job start Tue Mar 31 2020 05:42:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50706 * 109.46710 * 2 1 4 4 C 1.36707 * 126.61126 * 84.94410 * 3 2 1 5 5 C 1.47423 * 125.77753 * 0.03635 * 4 3 2 6 6 O 1.21628 * 119.99612 * 0.02562 * 5 4 3 7 7 N 1.34775 * 120.00018 * 180.02562 * 5 4 3 8 8 C 1.36954 * 120.00146 * 179.97438 * 7 5 4 9 9 H 1.07998 * 119.99393 * 0.02562 * 8 7 5 10 10 C 1.38990 * 120.00043 * 180.02562 * 8 7 5 11 11 N 1.31401 * 120.00086 * 359.97438 * 10 8 7 12 12 Si 1.86802 * 119.99773 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.47038 * 89.99866 * 12 10 8 14 14 H 1.48501 * 109.47020 * 209.99711 * 12 10 8 15 15 H 1.48497 * 109.47180 * 329.99972 * 12 10 8 16 16 N 1.34428 * 108.44444 * 180.02562 * 4 3 2 17 17 N 1.28747 * 109.58476 * 359.74663 * 16 4 3 18 18 N 1.35068 * 126.60510 * 264.96253 * 3 2 1 19 19 C 1.40310 * 126.61167 * 359.94381 * 18 3 2 20 20 C 1.38833 * 120.00700 * 136.01557 * 19 18 3 21 21 C 1.38067 * 119.98545 * 180.02562 * 20 19 18 22 22 C 1.38746 * 120.01274 * 0.02562 * 21 20 19 23 23 O 1.35925 * 119.99325 * 179.97438 * 22 21 20 24 24 C 1.42898 * 116.99876 * 3.81377 * 23 22 21 25 25 C 1.52999 * 109.47154 * 83.17853 * 24 23 22 26 26 C 1.52993 * 109.47426 * 203.17922 * 24 23 22 27 27 C 1.38754 * 120.01934 * 0.26884 * 22 21 20 28 28 C 1.38065 * 120.00671 * 359.45405 * 27 22 21 29 29 H 1.09003 * 109.47104 * 184.99655 * 1 2 3 30 30 H 1.08993 * 109.47898 * 304.99529 * 1 2 3 31 31 H 1.09003 * 109.46790 * 65.00395 * 1 2 3 32 32 H 1.08999 * 109.47588 * 239.99563 * 2 1 3 33 33 H 1.09005 * 109.46779 * 119.99118 * 2 1 3 34 34 H 0.97006 * 120.00013 * 0.02562 * 7 5 4 35 35 H 0.96997 * 119.99781 * 179.97438 * 11 10 8 36 36 H 1.07994 * 120.01099 * 0.04867 * 20 19 18 37 37 H 1.08005 * 119.99020 * 179.97438 * 21 20 19 38 38 H 1.09003 * 109.47476 * 323.18176 * 24 23 22 39 39 H 1.09004 * 109.47305 * 299.99723 * 25 24 23 40 40 H 1.08996 * 109.47042 * 59.99825 * 25 24 23 41 41 H 1.08997 * 109.47083 * 180.02562 * 25 24 23 42 42 H 1.08996 * 109.47390 * 59.99949 * 26 24 23 43 43 H 1.09005 * 109.47515 * 180.02562 * 26 24 23 44 44 H 1.09006 * 109.47350 * 300.00158 * 26 24 23 45 45 H 1.08001 * 119.99877 * 179.73012 * 27 22 21 46 46 H 1.08005 * 120.00392 * 180.29869 * 28 27 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.2127 2.2218 1.0931 5 6 1.9481 1.8423 2.4928 6 8 1.5316 0.7295 2.7528 7 7 2.1676 2.7284 3.4843 8 6 1.9212 2.3760 4.7846 9 1 1.5514 1.3879 5.0154 10 6 2.1471 3.2900 5.8071 11 7 2.5975 4.4920 5.5262 12 14 1.8117 2.8091 7.5807 13 1 3.0383 2.2186 8.1739 14 1 1.4183 4.0140 8.3544 15 1 0.7118 1.8123 7.6237 16 7 2.6727 3.4140 0.6755 17 7 2.7950 3.4045 -0.6061 18 7 2.3904 2.1485 -1.0801 19 6 2.3676 1.7269 -2.4181 20 6 1.8682 2.5685 -3.4029 21 6 1.8456 2.1529 -4.7194 22 6 2.3212 0.8943 -5.0581 23 8 2.2982 0.4854 -6.3542 24 6 1.8493 1.4326 -7.3254 25 6 3.0097 2.3493 -7.7180 26 6 1.3431 0.6916 -8.5645 27 6 2.8147 0.0505 -4.0733 28 6 2.8431 0.4674 -2.7574 29 1 -0.3633 -1.0238 0.0895 30 1 -0.3634 0.5893 0.8418 31 1 -0.3633 0.4343 -0.9315 32 1 1.8934 -0.5139 -0.8899 33 1 1.8932 -0.5137 0.8901 34 1 2.4994 3.6160 3.2769 35 1 2.7548 5.1300 6.2397 36 1 1.4979 3.5481 -3.1394 37 1 1.4567 2.8074 -5.4855 38 1 1.0409 2.0300 -6.9038 39 1 3.3703 2.8773 -6.8352 40 1 3.8180 1.7520 -8.1395 41 1 2.6672 3.0721 -8.4584 42 1 0.5165 0.0386 -8.2850 43 1 1.0011 1.4142 -9.3056 44 1 2.1515 0.0942 -8.9862 45 1 3.1808 -0.9308 -4.3368 46 1 3.2317 -0.1875 -1.9916 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096420722.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:35 Heat of formation + Delta-G solvation = 42.791254 kcal Electronic energy + Delta-G solvation = -29295.636645 eV Core-core repulsion = 25187.842479 eV Total energy + Delta-G solvation = -4107.794166 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.02555 -40.66200 -38.38318 -37.73584 -34.85382 -34.09583 -33.60684 -32.82212 -31.45121 -31.24213 -29.38955 -28.98647 -27.75889 -25.45526 -24.31982 -23.81711 -23.42350 -22.16245 -21.45090 -20.47342 -19.36506 -18.76710 -17.99478 -17.66560 -16.55402 -16.00589 -15.67011 -15.43290 -15.09884 -14.71656 -14.58920 -14.51100 -14.27042 -13.93795 -13.82645 -13.75713 -13.33336 -13.15571 -12.96243 -12.85166 -12.75692 -12.73987 -12.40042 -12.35740 -11.98476 -11.73126 -11.58675 -11.49823 -11.24767 -11.10930 -10.97794 -10.95418 -10.53921 -10.39294 -10.24938 -10.20080 -9.55522 -9.46654 -8.70821 -8.54836 -8.27167 -7.99324 -6.46026 -3.82403 0.63031 0.88527 1.70194 2.26927 2.42374 2.71656 3.21844 3.25927 3.27342 3.31965 4.13815 4.20534 4.30349 4.33002 4.38598 4.45380 4.52627 4.57542 4.71865 4.81145 4.91816 4.96169 5.02976 5.08058 5.20444 5.22520 5.24841 5.33745 5.35491 5.50729 5.52801 5.55353 5.60996 5.66093 5.67289 5.73137 5.87723 5.91736 6.04973 6.13892 6.15643 6.35748 6.50807 6.67108 6.88906 7.04951 7.50630 8.00741 8.38081 8.61382 9.11409 9.52483 10.03342 10.70310 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.030627 B = 0.002091 C = 0.002004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.996643 B =13389.307618 C =13970.448997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.059 4.059 3 C 0.102 3.898 4 C -0.056 4.056 5 C 0.506 3.494 6 O -0.592 6.592 7 N -0.530 5.530 8 C -0.299 4.299 9 H 0.109 0.891 10 C 0.025 3.975 11 N -0.884 5.884 12 Si 0.935 3.065 13 H -0.276 1.276 14 H -0.282 1.282 15 H -0.267 1.267 16 N -0.205 5.205 17 N -0.079 5.079 18 N -0.323 5.323 19 C 0.105 3.895 20 C -0.058 4.058 21 C -0.196 4.196 22 C 0.139 3.861 23 O -0.307 6.307 24 C 0.073 3.927 25 C -0.182 4.182 26 C -0.148 4.148 27 C -0.135 4.135 28 C -0.076 4.076 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.043 0.957 32 H 0.071 0.929 33 H 0.117 0.883 34 H 0.402 0.598 35 H 0.275 0.725 36 H 0.138 0.862 37 H 0.140 0.860 38 H 0.076 0.924 39 H 0.064 0.936 40 H 0.068 0.932 41 H 0.073 0.927 42 H 0.066 0.934 43 H 0.077 0.923 44 H 0.067 0.933 45 H 0.143 0.857 46 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.719 -6.622 -27.126 27.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.098 4.098 3 C -0.032 4.032 4 C -0.194 4.194 5 C 0.291 3.709 6 O -0.478 6.478 7 N -0.163 5.163 8 C -0.429 4.429 9 H 0.127 0.873 10 C -0.179 4.179 11 N -0.523 5.523 12 Si 0.761 3.239 13 H -0.202 1.202 14 H -0.208 1.208 15 H -0.192 1.192 16 N -0.078 5.078 17 N -0.056 5.056 18 N -0.105 5.105 19 C 0.014 3.986 20 C -0.078 4.078 21 C -0.215 4.215 22 C 0.092 3.908 23 O -0.221 6.221 24 C 0.018 3.982 25 C -0.239 4.239 26 C -0.206 4.206 27 C -0.154 4.154 28 C -0.097 4.097 29 H 0.084 0.916 30 H 0.089 0.911 31 H 0.063 0.937 32 H 0.090 0.910 33 H 0.135 0.865 34 H 0.237 0.763 35 H 0.085 0.915 36 H 0.156 0.844 37 H 0.157 0.843 38 H 0.094 0.906 39 H 0.083 0.917 40 H 0.087 0.913 41 H 0.092 0.908 42 H 0.085 0.915 43 H 0.096 0.904 44 H 0.086 0.914 45 H 0.160 0.840 46 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -1.357 -5.910 -27.228 27.895 hybrid contribution -0.229 -0.062 0.853 0.886 sum -1.586 -5.972 -26.375 27.089 Atomic orbital electron populations 1.21614 0.93454 1.02546 1.01904 1.20481 0.97359 0.87462 1.04521 1.21914 0.98791 0.96815 0.85671 1.21845 1.10265 0.90417 0.96912 1.16258 0.86816 0.86283 0.81567 1.90582 1.53407 1.21359 1.82499 1.41772 1.54441 1.14453 1.05642 1.19812 1.41118 1.00852 0.81082 0.87339 1.25410 0.96679 0.94968 1.00876 1.69655 1.43195 1.05078 1.34415 0.85789 0.78970 0.78051 0.81078 1.20217 1.20796 1.19191 1.74656 1.10396 1.19391 1.03332 1.82004 1.21687 0.97663 1.04241 1.47381 1.46108 1.12391 1.04600 1.17339 1.05304 0.95381 0.80621 1.20842 0.96079 0.99639 0.91211 1.21148 1.06570 0.96890 0.96920 1.19039 0.94813 0.92784 0.84115 1.86152 1.81484 1.41125 1.13304 1.22516 0.96772 0.90431 0.88529 1.22384 0.98946 0.99853 1.02705 1.21850 1.02031 1.01219 0.95458 1.20255 1.04166 1.00878 0.90090 1.21003 0.97532 0.94653 0.96475 0.91628 0.91073 0.93745 0.91033 0.86510 0.76344 0.91488 0.84439 0.84261 0.90595 0.91673 0.91295 0.90827 0.91512 0.90379 0.91360 0.83955 0.83907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 9.89 37.16 0.37 -1.60 16 2 C -0.06 -0.89 5.42 -27.88 -0.15 -1.04 16 3 C 0.10 1.87 6.10 -81.72 -0.50 1.37 16 4 C -0.06 -1.23 6.99 -83.54 -0.58 -1.82 16 5 C 0.51 12.84 7.77 -12.52 -0.10 12.74 16 6 O -0.59 -15.58 14.31 5.25 0.08 -15.50 16 7 N -0.53 -14.39 5.28 -11.95 -0.06 -14.46 16 8 C -0.30 -8.40 9.68 -14.98 -0.15 -8.55 16 9 H 0.11 3.10 7.15 -52.49 -0.38 2.72 16 10 C 0.02 0.66 5.50 -17.46 -0.10 0.57 16 11 N -0.88 -24.60 13.05 55.50 0.72 -23.88 16 12 Si 0.93 20.88 29.55 -169.99 -5.02 15.86 16 13 H -0.28 -6.09 7.11 56.52 0.40 -5.68 16 14 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 15 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 16 N -0.21 -4.54 12.03 32.85 0.40 -4.14 16 17 N -0.08 -1.55 13.66 60.35 0.82 -0.73 16 18 N -0.32 -5.46 3.70 -6.68 -0.02 -5.48 16 19 C 0.10 1.39 6.21 -83.54 -0.52 0.87 16 20 C -0.06 -0.66 9.88 -39.42 -0.39 -1.05 16 21 C -0.20 -1.78 8.35 -39.46 -0.33 -2.11 16 22 C 0.14 1.29 6.54 -39.20 -0.26 1.03 16 23 O -0.31 -2.62 9.81 -19.51 -0.19 -2.81 16 24 C 0.07 0.44 2.87 -26.74 -0.08 0.36 16 25 C -0.18 -0.96 9.27 37.16 0.34 -0.62 16 26 C -0.15 -0.65 9.56 37.15 0.36 -0.30 16 27 C -0.13 -1.25 9.98 -39.45 -0.39 -1.64 16 28 C -0.08 -0.83 8.39 -39.43 -0.33 -1.16 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.07 1.23 8.04 -51.93 -0.42 0.81 16 31 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.84 5.03 -51.93 -0.26 0.58 16 33 H 0.12 1.97 6.72 -51.93 -0.35 1.62 16 34 H 0.40 10.99 7.58 -40.82 -0.31 10.68 16 35 H 0.28 7.16 8.31 -40.82 -0.34 6.82 16 36 H 0.14 1.56 8.06 -52.49 -0.42 1.13 16 37 H 0.14 0.94 5.70 -52.48 -0.30 0.64 16 38 H 0.08 0.40 5.97 -51.93 -0.31 0.09 16 39 H 0.06 0.41 7.37 -51.93 -0.38 0.02 16 40 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 42 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 43 H 0.08 0.22 8.14 -51.93 -0.42 -0.21 16 44 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 45 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 46 H 0.14 1.44 6.45 -52.48 -0.34 1.10 16 LS Contribution 386.53 15.07 5.82 5.82 Total: -1.00 -32.25 386.53 -6.24 -38.50 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: -5.98 Total: 9.77 kcal Atomic # 6 Polarization: -0.13 SS G_CDS: -2.80 Total: -2.93 kcal Atomic # 7 Polarization: -50.55 SS G_CDS: 1.86 Total: -48.69 kcal Atomic # 8 Polarization: -18.20 SS G_CDS: -0.12 Total: -18.32 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.25 -6.24 -38.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096420722.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.287 kcal (2) G-P(sol) polarization free energy of solvation -32.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.495 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds