Wall clock time and date at job start Tue Mar 31 2020 04:58:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86799 * 119.99758 * 2 1 4 4 H 1.48500 * 109.47191 * 269.99710 * 3 2 1 5 5 H 1.48498 * 109.47443 * 30.00008 * 3 2 1 6 6 H 1.48503 * 109.47490 * 150.00113 * 3 2 1 7 7 C 1.38944 * 120.00379 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00392 * 180.02562 * 7 2 1 9 9 N 1.37104 * 119.99869 * 359.97438 * 7 2 1 10 10 C 1.34777 * 119.99856 * 180.02562 * 9 7 2 11 11 O 1.21289 * 120.00032 * 0.02562 * 10 9 7 12 12 C 1.50699 * 119.99701 * 180.02562 * 10 9 7 13 13 O 1.42901 * 109.47017 * 180.02562 * 12 10 9 14 14 C 1.35913 * 116.99973 * 179.97438 * 13 12 10 15 15 C 1.38748 * 120.04955 * 0.26087 * 14 13 12 16 16 C 1.38115 * 119.95819 * 180.27436 * 15 14 13 17 17 C 1.38365 * 120.04292 * 359.46231 * 16 15 14 18 18 Br 1.89105 * 119.95394 * 180.23688 * 17 16 15 19 19 C 1.38321 * 120.09222 * 0.25863 * 17 16 15 20 20 C 1.38159 * 120.04578 * 0.02562 * 19 17 16 21 21 N 1.48012 * 120.02211 * 179.97438 * 20 19 17 22 22 O 1.21800 * 120.00174 * 359.97438 * 21 20 19 23 23 O 1.21799 * 119.99842 * 179.97438 * 21 20 19 24 24 H 0.96993 * 120.00086 * 0.02562 * 1 2 3 25 25 H 0.96997 * 119.99875 * 0.02562 * 9 7 2 26 26 H 1.08997 * 109.47294 * 59.99847 * 12 10 9 27 27 H 1.08996 * 109.46934 * 299.99842 * 12 10 9 28 28 H 1.08004 * 120.02169 * 359.97438 * 15 14 13 29 29 H 1.08002 * 119.98157 * 179.74764 * 16 15 14 30 30 H 1.08004 * 119.97885 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4455 2.6527 0.7000 6 1 3.5457 1.4403 0.7000 7 6 2.0089 -1.2032 -0.0005 8 1 3.0890 -1.2032 -0.0001 9 7 1.3234 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0005 11 8 3.2103 -3.5577 -0.0001 12 6 1.2439 -4.8629 -0.0011 13 8 2.1726 -5.9490 -0.0004 14 6 1.6531 -7.2050 -0.0003 15 6 0.2778 -7.3880 -0.0063 16 6 -0.2481 -8.6651 -0.0004 17 6 0.5957 -9.7617 0.0002 18 35 -0.1270 -11.5092 0.0015 19 6 1.9672 -9.5815 0.0004 20 6 2.4972 -8.3056 0.0005 21 7 3.9648 -8.1134 0.0012 22 8 4.7056 -9.0802 0.0022 23 8 4.4316 -6.9885 0.0008 24 1 -0.4850 0.8400 -0.0004 25 1 0.3535 -2.3906 -0.0005 26 1 0.6176 -4.9205 -0.8913 27 1 0.6170 -4.9208 0.8886 28 1 -0.3812 -6.5323 -0.0107 29 1 -1.3186 -8.8080 -0.0010 30 1 2.6241 -10.4388 0.0013 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096424968.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:58:07 Heat of formation + Delta-G solvation = -39.825504 kcal Electronic energy + Delta-G solvation = -21080.056126 eV Core-core repulsion = 17312.026858 eV Total energy + Delta-G solvation = -3768.029267 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 343.989 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.09055 -40.54603 -38.67875 -37.53123 -36.22851 -34.10466 -32.76138 -32.19087 -31.46029 -29.69747 -28.28052 -26.53450 -24.87295 -23.02642 -22.41478 -19.75301 -19.51860 -18.50939 -18.28975 -17.85768 -17.40892 -16.59068 -16.24957 -15.91166 -15.52469 -14.97093 -14.69357 -14.08787 -14.08145 -13.56578 -13.14568 -12.81093 -12.47321 -11.96357 -11.76244 -11.66520 -11.32720 -11.15818 -10.98601 -10.84906 -10.77494 -10.77351 -10.47718 -10.35190 -10.09641 -9.66532 -8.85642 -8.61109 -8.15018 -6.56917 -3.98562 -0.26333 0.40346 0.93273 1.24582 1.50225 2.53304 2.76536 3.09429 3.20967 3.27621 3.62415 3.90223 4.06610 4.09525 4.26646 4.42869 4.70507 4.77902 4.95301 5.01009 5.05958 5.29206 5.35441 5.38243 5.64877 5.92449 6.43217 6.79706 7.42709 7.82950 7.86293 8.40515 9.01209 9.30400 9.80448 10.60321 Molecular weight = 343.99amu Principal moments of inertia in cm(-1) A = 0.022585 B = 0.002522 C = 0.002271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.485976 B =11101.021691 C =12325.362206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.026 3.974 3 Si 0.933 3.067 4 H -0.276 1.276 5 H -0.283 1.283 6 H -0.267 1.267 7 C -0.301 4.301 8 H 0.107 0.893 9 N -0.552 5.552 10 C 0.437 3.563 11 O -0.558 6.558 12 C 0.038 3.962 13 O -0.241 6.241 14 C 0.219 3.781 15 C -0.211 4.211 16 C 0.002 3.998 17 C -0.145 4.145 18 Br -0.025 7.025 19 C 0.011 3.989 20 C -0.081 4.081 21 N 0.030 4.970 22 O -0.189 6.189 23 O -0.102 6.102 24 H 0.274 0.726 25 H 0.393 0.607 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.164 0.836 29 H 0.154 0.846 30 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.992 -22.081 0.004 23.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.177 4.177 3 Si 0.760 3.240 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.192 1.192 7 C -0.430 4.430 8 H 0.125 0.875 9 N -0.190 5.190 10 C 0.221 3.779 11 O -0.440 6.440 12 C -0.040 4.040 13 O -0.148 6.148 14 C 0.167 3.833 15 C -0.231 4.231 16 C -0.018 4.018 17 C -0.225 4.225 18 Br 0.060 6.940 19 C -0.010 4.010 20 C -0.167 4.167 21 N 0.550 4.450 22 O -0.394 6.394 23 O -0.329 6.329 24 H 0.084 0.916 25 H 0.227 0.773 26 H 0.106 0.894 27 H 0.106 0.894 28 H 0.181 0.819 29 H 0.172 0.828 30 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -8.039 -22.657 0.011 24.040 hybrid contribution -0.095 1.255 -0.009 1.258 sum -8.134 -21.402 0.001 22.895 Atomic orbital electron populations 1.69596 1.06011 1.28548 1.49814 1.25294 0.95693 0.99878 0.96787 0.85796 0.79320 0.80308 0.78580 1.20212 1.20809 1.19162 1.19750 0.93575 0.81608 1.48064 0.87478 1.41667 1.09203 1.03989 1.64156 1.19082 0.88438 0.83678 0.86727 1.90656 1.13005 1.86241 1.54094 1.22912 0.91962 0.86209 1.02946 1.86576 1.34502 1.10100 1.83605 1.18972 0.91436 0.85522 0.87386 1.21463 0.92686 0.99479 1.09436 1.21321 1.00908 0.90170 0.89410 1.21432 0.93790 0.93009 1.14306 1.96787 1.84406 1.14901 1.97929 1.20765 0.94448 0.95488 0.90301 1.20409 0.80838 0.93648 1.21817 1.43264 1.02294 1.01068 0.98397 1.94496 1.56440 1.32984 1.55503 1.94782 1.78556 1.09023 1.50517 0.91619 0.77327 0.89417 0.89425 0.81883 0.82835 0.81673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.11 13.05 55.50 0.72 -22.39 16 2 C 0.03 0.66 5.50 -17.47 -0.10 0.56 16 3 Si 0.93 20.26 29.55 -169.99 -5.02 15.23 16 4 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 5 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 6 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 7 C -0.30 -8.02 9.68 -14.93 -0.14 -8.16 16 8 H 0.11 3.02 7.16 -52.48 -0.38 2.65 16 9 N -0.55 -13.07 5.29 -10.96 -0.06 -13.13 16 10 C 0.44 9.86 7.86 -10.99 -0.09 9.77 16 11 O -0.56 -15.27 16.07 -14.36 -0.23 -15.50 16 12 C 0.04 0.60 5.22 36.01 0.19 0.79 16 13 O -0.24 -4.18 7.68 -49.82 -0.38 -4.56 16 14 C 0.22 2.98 6.67 -39.22 -0.26 2.71 16 15 C -0.21 -1.98 9.04 -39.44 -0.36 -2.33 16 16 C 0.00 0.01 9.78 -39.58 -0.39 -0.37 16 17 C -0.14 -1.27 6.22 -39.50 -0.25 -1.52 16 18 Br -0.03 -0.19 33.70 -68.01 -2.29 -2.48 16 19 C 0.01 0.11 9.29 -39.58 -0.37 -0.25 16 20 C -0.08 -1.14 6.86 -79.81 -0.55 -1.68 16 21 N 0.03 0.51 4.45 34.03 0.15 0.66 16 22 O -0.19 -3.14 18.45 -29.46 -0.54 -3.68 16 23 O -0.10 -2.08 17.24 -36.49 -0.63 -2.71 16 24 H 0.27 6.67 8.31 -40.82 -0.34 6.33 16 25 H 0.39 8.57 7.90 -40.82 -0.32 8.25 16 26 H 0.09 1.09 7.65 -51.93 -0.40 0.69 16 27 H 0.09 1.09 7.67 -51.93 -0.40 0.69 16 28 H 0.16 1.15 6.30 -52.48 -0.33 0.82 16 29 H 0.15 0.73 8.06 -52.49 -0.42 0.30 16 30 H 0.17 1.55 7.61 -52.48 -0.40 1.15 16 LS Contribution 303.59 15.07 4.57 4.57 Total: -1.00 -32.35 303.59 -7.80 -40.15 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: -1.78 Total: 4.32 kcal Atomic # 6 Polarization: 1.82 SS G_CDS: -2.31 Total: -0.49 kcal Atomic # 7 Polarization: -35.67 SS G_CDS: 0.82 Total: -34.85 kcal Atomic # 8 Polarization: -24.67 SS G_CDS: -1.79 Total: -26.46 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.23 kcal Atomic # 35 Polarization: -0.19 SS G_CDS: -2.29 Total: -2.48 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -32.35 -7.80 -40.15 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096424968.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.323 kcal (2) G-P(sol) polarization free energy of solvation -32.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds