Wall clock time and date at job start Tue Mar 31 2020 05:49:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31558 * 1 3 3 Si 1.86802 * 120.00112 * 2 1 4 4 H 1.48497 * 109.46864 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46611 * 299.99587 * 3 2 1 6 6 H 1.48497 * 109.47365 * 59.99262 * 3 2 1 7 7 C 1.38652 * 119.99994 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00078 * 180.02562 * 7 2 1 9 9 O 1.34836 * 120.00285 * 0.02562 * 7 2 1 10 10 C 1.35743 * 117.00178 * 185.03764 * 9 7 2 11 11 C 1.38901 * 120.07279 * 354.68365 * 10 9 7 12 12 C 1.38072 * 119.93200 * 179.72573 * 11 10 9 13 13 C 1.38322 * 120.07177 * 0.50944 * 12 11 10 14 14 C 1.38289 * 120.13600 * 359.48609 * 13 12 11 15 15 C 1.50701 * 119.96550 * 180.23768 * 14 13 12 16 16 N 1.46496 * 109.46985 * 90.00169 * 15 14 13 17 17 C 1.34786 * 119.99716 * 180.02562 * 16 15 14 18 18 O 1.21583 * 119.99520 * 4.98318 * 17 16 15 19 19 N 1.34778 * 119.99554 * 184.98975 * 17 16 15 20 20 C 1.47955 * 122.26986 * 355.51583 * 19 17 16 21 21 C 1.52698 * 110.99125 * 231.67485 * 20 19 17 22 22 C 1.53826 * 111.69112 * 311.59899 * 21 20 19 23 23 C 1.51542 * 107.20298 * 57.54999 * 22 21 20 24 24 H 1.08999 * 110.18568 * 54.29841 * 23 22 21 25 25 C 1.53014 * 116.91177 * 181.13255 * 23 22 21 26 26 C 1.55461 * 102.74671 * 157.85308 * 25 23 22 27 27 C 1.55058 * 106.32638 * 335.96292 * 26 25 23 28 28 C 1.45295 * 122.26151 * 175.23875 * 19 17 16 29 29 H 1.08996 * 109.69686 * 238.25763 * 28 19 17 30 30 C 1.38125 * 120.06745 * 0.25945 * 14 13 12 31 31 H 0.96993 * 120.00010 * 0.02562 * 1 2 3 32 32 H 1.08000 * 120.03149 * 359.97438 * 11 10 9 33 33 H 1.08000 * 119.96879 * 180.25171 * 12 11 10 34 34 H 1.07998 * 119.93744 * 179.76761 * 13 12 11 35 35 H 1.08995 * 109.46721 * 210.00275 * 15 14 13 36 36 H 1.08999 * 109.46748 * 329.99715 * 15 14 13 37 37 H 0.96996 * 120.00506 * 359.97438 * 16 15 14 38 38 H 1.08994 * 109.17114 * 352.07082 * 20 19 17 39 39 H 1.09006 * 109.16744 * 111.29006 * 20 19 17 40 40 H 1.09004 * 109.03305 * 72.17224 * 21 20 19 41 41 H 1.09002 * 109.03818 * 191.10505 * 21 20 19 42 42 H 1.08999 * 109.90454 * 176.97179 * 22 21 20 43 43 H 1.08991 * 109.90850 * 298.04577 * 22 21 20 44 44 H 1.09009 * 110.75462 * 276.16283 * 25 23 22 45 45 H 1.08994 * 110.75647 * 39.34579 * 25 23 22 46 46 H 1.08997 * 110.08647 * 95.18103 * 26 25 23 47 47 H 1.09005 * 110.08196 * 216.69280 * 26 25 23 48 48 H 1.08994 * 110.30058 * 114.96675 * 27 26 25 49 49 H 1.08994 * 110.29947 * 237.02033 * 27 26 25 50 50 H 1.08001 * 120.03337 * 179.97438 * 30 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.7096 1.3463 0.0006 5 1 1.8909 2.3963 -1.2126 6 1 1.8908 2.3966 1.2124 7 6 2.0088 -1.2008 0.0005 8 1 3.0888 -1.2008 0.0010 9 8 1.3347 -2.3685 0.0005 10 6 2.0700 -3.5046 0.1073 11 6 3.4574 -3.4391 0.0990 12 6 4.2024 -4.5959 0.2135 13 6 3.5686 -5.8202 0.3257 14 6 2.1874 -5.8888 0.3343 15 6 1.5009 -7.2243 0.4621 16 7 1.2805 -7.5264 1.8785 17 6 0.6776 -8.6777 2.2361 18 8 0.3986 -9.5058 1.3907 19 7 0.3841 -8.9108 3.5307 20 6 0.7869 -7.9839 4.6113 21 6 1.5192 -8.7280 5.7256 22 6 0.7589 -9.9928 6.1597 23 6 0.5918 -10.8601 4.9283 24 1 1.5604 -11.0436 4.4633 25 6 -0.1672 -12.1767 5.1063 26 6 -0.6482 -12.4933 3.6623 27 6 -0.6985 -11.1370 2.9125 28 6 -0.3544 -10.0865 3.9590 29 1 -1.2565 -9.7807 4.4889 30 6 1.4365 -4.7347 0.2254 31 1 -0.4850 0.8400 -0.0004 32 1 3.9529 -2.4838 0.0072 33 1 5.2812 -4.5453 0.2112 34 1 4.1535 -6.7241 0.4113 35 1 0.5424 -7.1910 -0.0558 36 1 2.1269 -7.9985 0.0184 37 1 1.5691 -6.8984 2.5591 38 1 1.4445 -7.2183 4.1995 39 1 -0.1023 -7.5068 5.0235 40 1 2.5100 -9.0126 5.3715 41 1 1.6256 -8.0659 6.5849 42 1 1.3319 -10.5288 6.9163 43 1 -0.2181 -9.7200 6.5584 44 1 0.4975 -12.9594 5.4723 45 1 -1.0147 -12.0461 5.7791 46 1 0.0556 -13.1660 3.1723 47 1 -1.6402 -12.9443 3.6887 48 1 0.0339 -11.1238 2.1054 49 1 -1.6989 -10.9601 2.5176 50 1 0.3579 -4.7889 0.2318 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096440242.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:09 Heat of formation + Delta-G solvation = -29.758060 kcal Electronic energy + Delta-G solvation = -29916.148818 eV Core-core repulsion = 25908.749021 eV Total energy + Delta-G solvation = -4007.399797 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -40.93739 -39.25202 -38.49818 -36.78204 -35.69336 -34.35224 -33.06535 -32.34694 -30.75284 -29.18771 -29.10648 -27.98054 -26.03945 -25.29468 -24.51123 -21.96951 -21.75701 -21.43191 -20.71343 -20.40548 -19.87698 -17.97048 -17.39141 -16.91764 -16.41660 -15.73144 -15.46785 -15.21413 -14.98332 -14.81083 -14.64897 -14.45095 -14.01632 -13.92458 -13.78835 -13.65361 -13.53593 -13.35017 -12.90318 -12.71823 -12.37811 -12.31343 -12.13444 -11.69125 -11.63488 -11.51416 -11.37425 -11.14757 -11.01983 -10.95513 -10.86413 -10.83099 -10.78914 -10.69531 -10.61196 -10.47089 -9.43514 -9.38975 -9.00288 -8.91078 -8.47337 -8.25464 -7.33987 -6.50796 -4.10265 1.86474 2.25615 2.72895 3.08316 3.09781 3.15376 3.23222 3.84004 3.91405 4.24739 4.41436 4.47997 4.53618 4.65777 4.80912 4.92647 4.95541 5.05602 5.10488 5.14926 5.18767 5.27926 5.32047 5.40467 5.42557 5.53019 5.55033 5.59528 5.66059 5.71572 5.77464 5.80105 5.82869 5.84868 5.87430 5.95026 6.06227 6.11183 6.19640 6.22307 6.25080 6.53790 6.57581 6.77074 6.81122 6.97257 7.02433 7.18935 7.26604 7.34614 7.69902 7.93502 7.99857 8.67305 8.94709 9.63591 10.67064 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.018445 B = 0.002112 C = 0.002059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.636172 B =13254.265665 C =13595.744755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.039 3.961 3 Si 0.941 3.059 4 H -0.267 1.267 5 H -0.275 1.275 6 H -0.276 1.276 7 C -0.393 4.393 8 H 0.093 0.907 9 O -0.176 6.176 10 C 0.150 3.850 11 C -0.225 4.225 12 C -0.077 4.077 13 C -0.194 4.194 14 C -0.072 4.072 15 C 0.186 3.814 16 N -0.738 5.738 17 C 0.712 3.288 18 O -0.587 6.587 19 N -0.624 5.624 20 C 0.113 3.887 21 C -0.133 4.133 22 C -0.108 4.108 23 C -0.113 4.113 24 H 0.078 0.922 25 C -0.116 4.116 26 C -0.123 4.123 27 C -0.136 4.136 28 C 0.158 3.842 29 H 0.070 0.930 30 C -0.170 4.170 31 H 0.270 0.730 32 H 0.128 0.872 33 H 0.109 0.891 34 H 0.107 0.893 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.397 0.603 38 H 0.079 0.921 39 H 0.069 0.931 40 H 0.066 0.934 41 H 0.077 0.923 42 H 0.065 0.935 43 H 0.066 0.934 44 H 0.065 0.935 45 H 0.067 0.933 46 H 0.063 0.937 47 H 0.061 0.939 48 H 0.117 0.883 49 H 0.062 0.938 50 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.468 -19.184 12.103 22.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.165 4.165 3 Si 0.766 3.234 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.469 4.469 8 H 0.110 0.890 9 O -0.080 6.080 10 C 0.096 3.904 11 C -0.245 4.245 12 C -0.095 4.095 13 C -0.214 4.214 14 C -0.073 4.073 15 C 0.063 3.937 16 N -0.394 5.394 17 C 0.414 3.586 18 O -0.466 6.466 19 N -0.361 5.361 20 C -0.010 4.010 21 C -0.172 4.172 22 C -0.145 4.145 23 C -0.132 4.132 24 H 0.097 0.903 25 C -0.154 4.154 26 C -0.161 4.161 27 C -0.174 4.174 28 C 0.054 3.946 29 H 0.088 0.912 30 C -0.190 4.190 31 H 0.080 0.920 32 H 0.145 0.855 33 H 0.127 0.873 34 H 0.125 0.875 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.233 0.767 38 H 0.097 0.903 39 H 0.087 0.913 40 H 0.084 0.916 41 H 0.095 0.905 42 H 0.084 0.916 43 H 0.084 0.916 44 H 0.084 0.916 45 H 0.085 0.915 46 H 0.082 0.918 47 H 0.080 0.920 48 H 0.135 0.865 49 H 0.081 0.919 50 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 1.813 -19.524 11.394 22.678 hybrid contribution 0.697 1.361 0.402 1.581 sum 2.510 -18.163 11.796 21.802 Atomic orbital electron populations 1.70045 1.05968 1.27656 1.45888 1.25301 0.95851 0.98869 0.96495 0.85643 0.79124 0.80333 0.78305 1.19088 1.20100 1.20116 1.21372 0.91817 0.80754 1.52936 0.88987 1.83984 1.34280 1.11415 1.78306 1.19330 0.90259 0.88068 0.92706 1.21240 0.93834 0.99106 1.10320 1.20744 0.98557 0.92258 0.97930 1.20486 0.93362 0.97081 1.10449 1.19297 0.93483 0.92914 1.01621 1.19990 0.99903 0.93393 0.80421 1.45493 1.64092 1.20837 1.09014 1.15865 0.78462 0.82326 0.81899 1.90773 1.60580 1.45510 1.49721 1.46995 1.59333 1.25214 1.04545 1.21637 0.99634 0.91670 0.88101 1.21903 0.99642 0.97516 0.98121 1.21363 1.00655 0.95409 0.97096 1.22310 0.99616 0.94693 0.96627 0.90345 1.22119 0.99615 0.96564 0.97109 1.22577 1.00978 0.97622 0.94939 1.22494 1.03998 0.91848 0.99016 1.21451 0.93232 0.84687 0.95261 0.91240 1.20094 0.99438 0.89791 1.09716 0.91999 0.85474 0.87310 0.87523 0.91125 0.91100 0.76718 0.90261 0.91317 0.91557 0.90483 0.91607 0.91560 0.91626 0.91466 0.91801 0.92027 0.86549 0.91914 0.86413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.83 13.67 55.48 0.76 -24.07 16 2 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 3 Si 0.94 20.08 29.55 -169.99 -5.02 15.05 16 4 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 5 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 6 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 7 C -0.39 -10.69 9.49 30.89 0.29 -10.39 16 8 H 0.09 2.31 5.20 -52.49 -0.27 2.04 16 9 O -0.18 -4.90 9.76 0.05 0.00 -4.90 16 10 C 0.15 3.48 6.65 -39.10 -0.26 3.22 16 11 C -0.23 -4.68 9.17 -39.40 -0.36 -5.04 16 12 C -0.08 -1.33 10.04 -39.61 -0.40 -1.73 16 13 C -0.19 -3.17 9.70 -39.53 -0.38 -3.55 16 14 C -0.07 -1.22 5.25 -104.64 -0.55 -1.77 16 15 C 0.19 2.80 5.80 -5.20 -0.03 2.77 16 16 N -0.74 -10.19 5.48 -66.42 -0.36 -10.56 16 17 C 0.71 10.34 8.35 -86.91 -0.73 9.62 16 18 O -0.59 -10.10 13.02 5.29 0.07 -10.03 16 19 N -0.62 -7.24 2.92 -170.30 -0.50 -7.74 16 20 C 0.11 1.01 6.37 -3.40 -0.02 0.99 16 21 C -0.13 -0.97 5.95 -26.46 -0.16 -1.12 16 22 C -0.11 -0.75 5.70 -27.04 -0.15 -0.91 16 23 C -0.11 -0.97 2.45 -89.75 -0.22 -1.18 16 24 H 0.08 0.79 8.13 -51.93 -0.42 0.37 16 25 C -0.12 -0.87 6.50 -25.42 -0.17 -1.03 16 26 C -0.12 -1.06 6.88 -24.34 -0.17 -1.23 16 27 C -0.14 -1.55 5.55 -26.04 -0.14 -1.69 16 28 C 0.16 1.67 2.91 -67.37 -0.20 1.47 16 29 H 0.07 0.70 8.01 -51.93 -0.42 0.28 16 30 C -0.17 -3.44 9.65 -39.39 -0.38 -3.82 16 31 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 32 H 0.13 2.65 5.64 -52.49 -0.30 2.36 16 33 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 34 H 0.11 1.51 8.06 -52.49 -0.42 1.08 16 35 H 0.07 1.11 8.08 -51.93 -0.42 0.69 16 36 H 0.07 1.04 8.08 -51.93 -0.42 0.62 16 37 H 0.40 4.99 6.11 -40.82 -0.25 4.74 16 38 H 0.08 0.69 5.84 -51.93 -0.30 0.39 16 39 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 43 H 0.07 0.44 8.01 -51.93 -0.42 0.02 16 44 H 0.06 0.44 8.14 -51.92 -0.42 0.02 16 45 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 48 H 0.12 1.66 5.31 -51.95 -0.28 1.39 16 49 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 50 H 0.12 2.37 8.06 -52.49 -0.42 1.94 16 LS Contribution 391.76 15.07 5.90 5.90 Total: -1.00 -30.91 391.76 -10.97 -41.88 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: -7.70 Total: 8.90 kcal Atomic # 6 Polarization: -10.33 SS G_CDS: -4.12 Total: -14.45 kcal Atomic # 7 Polarization: -42.26 SS G_CDS: -0.10 Total: -42.36 kcal Atomic # 8 Polarization: -15.00 SS G_CDS: 0.07 Total: -14.93 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.05 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -30.91 -10.97 -41.88 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096440242.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.120 kcal (2) G-P(sol) polarization free energy of solvation -30.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds