Wall clock time and date at job start Tue Mar 31 2020 05:49:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31549 * 1 3 3 Si 1.86804 * 120.00158 * 2 1 4 4 H 1.48502 * 109.47292 * 240.00606 * 3 2 1 5 5 H 1.48505 * 109.46691 * 0.02562 * 3 2 1 6 6 H 1.48490 * 109.47267 * 120.00086 * 3 2 1 7 7 C 1.38663 * 120.00166 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99645 * 179.97438 * 7 2 1 9 9 O 1.34822 * 119.99761 * 359.97438 * 7 2 1 10 10 C 1.35759 * 116.99924 * 185.05528 * 9 7 2 11 11 C 1.38901 * 120.06538 * 354.46825 * 10 9 7 12 12 C 1.38075 * 119.92646 * 179.97438 * 11 10 9 13 13 C 1.38332 * 120.07026 * 359.97438 * 12 11 10 14 14 C 1.38268 * 120.13666 * 359.97438 * 13 12 11 15 15 C 1.50707 * 119.96490 * 179.97438 * 14 13 12 16 16 N 1.46500 * 109.46890 * 90.00097 * 15 14 13 17 17 C 1.34775 * 119.99691 * 180.27840 * 16 15 14 18 18 O 1.21583 * 120.00359 * 359.72049 * 17 16 15 19 19 N 1.34779 * 119.99550 * 179.72630 * 17 16 15 20 20 C 1.45342 * 116.78119 * 359.73730 * 19 17 16 21 21 C 1.53347 * 109.87423 * 154.39701 * 20 19 17 22 22 C 1.53274 * 107.50605 * 53.17785 * 21 20 19 23 23 C 1.52570 * 109.12999 * 290.71997 * 22 21 20 24 24 H 1.08999 * 109.90128 * 290.66241 * 23 22 21 25 25 C 1.54292 * 108.79002 * 170.40588 * 23 22 21 26 26 C 1.54018 * 105.04046 * 266.15302 * 25 23 22 27 27 C 1.53824 * 105.83094 * 331.59833 * 26 25 23 28 28 C 1.43771 * 116.77446 * 180.02562 * 19 17 16 29 29 H 1.08997 * 107.07725 * 309.02044 * 28 19 17 30 30 C 1.38128 * 120.07297 * 0.27277 * 14 13 12 31 31 H 0.96994 * 120.00456 * 359.97438 * 1 2 3 32 32 H 1.07996 * 120.03570 * 359.97438 * 11 10 9 33 33 H 1.07999 * 119.96195 * 180.02562 * 12 11 10 34 34 H 1.07994 * 119.92442 * 179.97438 * 13 12 11 35 35 H 1.08995 * 109.47049 * 330.00047 * 15 14 13 36 36 H 1.08995 * 109.47122 * 209.99852 * 15 14 13 37 37 H 0.96996 * 120.00254 * 0.02562 * 16 15 14 38 38 H 1.08990 * 109.38642 * 274.72869 * 20 19 17 39 39 H 1.09001 * 109.37808 * 34.40988 * 20 19 17 40 40 H 1.08990 * 110.01980 * 293.60734 * 21 20 19 41 41 H 1.09007 * 109.76488 * 172.59267 * 21 20 19 42 42 H 1.09000 * 109.52963 * 170.82953 * 22 21 20 43 43 H 1.08993 * 109.53064 * 50.62314 * 22 21 20 44 44 H 1.08998 * 110.32605 * 147.26147 * 25 23 22 45 45 H 1.09001 * 110.32557 * 25.04631 * 25 23 22 46 46 H 1.08996 * 110.18154 * 212.50339 * 26 25 23 47 47 H 1.09010 * 110.18034 * 90.68439 * 26 25 23 48 48 H 1.08999 * 109.99638 * 259.60917 * 27 26 25 49 49 H 1.09000 * 110.03993 * 138.27806 * 27 26 25 50 50 H 1.08000 * 120.03631 * 179.70268 * 30 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.1032 1.6965 -1.2126 5 1 1.2845 2.7464 0.0006 6 1 3.1033 1.6964 1.2124 7 6 2.0088 -1.2008 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3347 -2.3684 -0.0005 10 6 2.0701 -3.5047 0.1055 11 6 3.4575 -3.4394 0.0921 12 6 4.2026 -4.5968 0.2006 13 6 3.5688 -5.8203 0.3232 14 6 2.1878 -5.8883 0.3380 15 6 1.5013 -7.2233 0.4712 16 7 1.2870 -7.5229 1.8891 17 6 0.6900 -8.6755 2.2516 18 8 0.3246 -9.4644 1.4016 19 7 0.4978 -8.9536 3.5563 20 6 0.9667 -7.9646 4.5126 21 6 0.1608 -8.0736 5.8127 22 6 0.2275 -9.5333 6.2755 23 6 -0.5738 -10.4011 5.3098 24 1 -1.6373 -10.1860 5.4128 25 6 -0.3065 -11.8852 5.6365 26 6 0.8447 -12.2993 4.7008 27 6 0.7189 -11.4018 3.4579 28 6 -0.1450 -10.2021 3.8645 29 1 -1.0534 -10.2512 3.2642 30 6 1.4368 -4.7346 0.2247 31 1 -0.4850 0.8400 0.0004 32 1 3.9529 -2.4845 -0.0032 33 1 5.2814 -4.5467 0.1907 34 1 4.1538 -6.7241 0.4076 35 1 2.1250 -7.9985 0.0263 36 1 0.5406 -7.1906 -0.0425 37 1 1.5782 -6.8934 2.5672 38 1 2.0225 -8.1359 4.7219 39 1 0.8399 -6.9668 4.0926 40 1 -0.8761 -7.7895 5.6339 41 1 0.5970 -7.4248 6.5723 42 1 -0.1944 -9.6177 7.2770 43 1 1.2658 -9.8647 6.2875 44 1 -1.1943 -12.4837 5.4324 45 1 -0.0059 -11.9953 6.6784 46 1 0.7422 -13.3474 4.4196 47 1 1.8049 -12.1326 5.1893 48 1 0.2375 -11.9509 2.6488 49 1 1.7048 -11.0609 3.1420 50 1 0.3581 -4.7889 0.2314 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096440243.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:14 Heat of formation + Delta-G solvation = -36.830469 kcal Electronic energy + Delta-G solvation = -29937.146810 eV Core-core repulsion = 25929.440330 eV Total energy + Delta-G solvation = -4007.706479 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.11446 -39.25496 -38.58435 -36.79287 -35.63992 -34.40153 -33.27454 -32.34265 -30.78820 -29.39661 -29.14599 -28.12480 -25.94162 -25.27627 -24.73481 -22.41761 -21.73923 -21.35859 -20.75750 -20.38586 -18.93941 -18.17385 -17.54747 -16.94117 -16.58238 -16.15278 -15.62786 -15.28158 -15.08752 -14.75997 -14.56351 -14.33780 -14.31516 -13.88220 -13.69118 -13.62174 -13.57039 -13.15714 -12.90254 -12.67745 -12.36574 -12.33058 -12.15322 -11.80815 -11.66799 -11.51230 -11.39419 -11.35266 -11.04141 -10.94241 -10.92233 -10.81511 -10.70495 -10.58134 -10.49996 -10.49405 -9.99063 -9.42054 -9.01280 -8.89768 -8.50755 -8.25116 -7.33417 -6.49827 -4.09413 1.87748 2.26523 2.78086 3.09833 3.10603 3.13682 3.25071 3.90768 3.94356 4.21704 4.29798 4.40035 4.53429 4.63163 4.66323 4.88146 4.95167 5.06350 5.10066 5.17123 5.20977 5.25463 5.29518 5.33017 5.44525 5.50291 5.54579 5.57781 5.59864 5.65449 5.72177 5.78361 5.80600 5.85518 5.89551 5.96709 5.98593 6.07326 6.11281 6.16565 6.25243 6.55339 6.59302 6.70578 6.81826 6.89389 6.99545 7.19656 7.27056 7.35115 7.70642 7.94093 7.98822 8.65854 8.95342 9.64247 10.67856 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.018069 B = 0.002156 C = 0.002042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.237461 B =12982.399087 C =13705.950722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.040 3.960 3 Si 0.941 3.059 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.394 4.394 8 H 0.092 0.908 9 O -0.176 6.176 10 C 0.150 3.850 11 C -0.225 4.225 12 C -0.077 4.077 13 C -0.194 4.194 14 C -0.072 4.072 15 C 0.185 3.815 16 N -0.737 5.737 17 C 0.696 3.304 18 O -0.589 6.589 19 N -0.613 5.613 20 C 0.109 3.891 21 C -0.131 4.131 22 C -0.112 4.112 23 C -0.090 4.090 24 H 0.078 0.922 25 C -0.117 4.117 26 C -0.123 4.123 27 C -0.125 4.125 28 C 0.172 3.828 29 H 0.065 0.935 30 C -0.171 4.171 31 H 0.271 0.729 32 H 0.127 0.873 33 H 0.109 0.891 34 H 0.107 0.893 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.399 0.601 38 H 0.062 0.938 39 H 0.076 0.924 40 H 0.072 0.928 41 H 0.080 0.920 42 H 0.067 0.933 43 H 0.067 0.933 44 H 0.067 0.933 45 H 0.069 0.931 46 H 0.064 0.936 47 H 0.061 0.939 48 H 0.072 0.928 49 H 0.065 0.935 50 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.541 -18.943 12.960 23.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.165 4.165 3 Si 0.765 3.235 4 H -0.195 1.195 5 H -0.202 1.202 6 H -0.195 1.195 7 C -0.470 4.470 8 H 0.109 0.891 9 O -0.079 6.079 10 C 0.096 3.904 11 C -0.245 4.245 12 C -0.095 4.095 13 C -0.214 4.214 14 C -0.073 4.073 15 C 0.062 3.938 16 N -0.394 5.394 17 C 0.397 3.603 18 O -0.468 6.468 19 N -0.349 5.349 20 C -0.015 4.015 21 C -0.169 4.169 22 C -0.150 4.150 23 C -0.109 4.109 24 H 0.097 0.903 25 C -0.155 4.155 26 C -0.161 4.161 27 C -0.164 4.164 28 C 0.068 3.932 29 H 0.084 0.916 30 C -0.191 4.191 31 H 0.081 0.919 32 H 0.145 0.855 33 H 0.127 0.873 34 H 0.125 0.875 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.235 0.765 38 H 0.080 0.920 39 H 0.095 0.905 40 H 0.091 0.909 41 H 0.099 0.901 42 H 0.086 0.914 43 H 0.085 0.915 44 H 0.086 0.914 45 H 0.088 0.912 46 H 0.083 0.917 47 H 0.080 0.920 48 H 0.091 0.909 49 H 0.084 0.916 50 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 1.796 -19.298 12.329 22.971 hybrid contribution 0.749 1.306 0.263 1.528 sum 2.545 -17.993 12.591 22.108 Atomic orbital electron populations 1.70020 1.05971 1.27879 1.45702 1.25294 0.95841 0.98850 0.96471 0.85783 0.78716 0.79751 0.79202 1.19467 1.20249 1.19492 1.21273 0.91761 0.80785 1.53163 0.89099 1.83984 1.34240 1.11392 1.78314 1.19331 0.90261 0.88063 0.92719 1.21236 0.93833 0.99084 1.10354 1.20746 0.98551 0.92260 0.97925 1.20480 0.93356 0.97101 1.10445 1.19289 0.93483 0.92911 1.01597 1.19996 0.99934 0.93407 0.80467 1.45501 1.64178 1.20597 1.09078 1.16010 0.79255 0.82232 0.82756 1.90898 1.56932 1.49284 1.49647 1.46111 1.64013 1.20235 1.04577 1.21397 0.98065 0.91726 0.90289 1.21896 1.01179 0.97332 0.96444 1.21531 1.00738 0.94411 0.98316 1.21538 1.00210 0.95886 0.93308 0.90314 1.22279 0.98820 0.94712 0.99691 1.22112 0.98499 0.99478 0.96011 1.22357 1.00713 0.95756 0.97552 1.19977 0.95393 0.82260 0.95613 0.91648 1.20092 0.99444 0.89802 1.09718 0.91894 0.85485 0.87309 0.87526 0.91172 0.91085 0.76475 0.92030 0.90550 0.90916 0.90139 0.91393 0.91451 0.91432 0.91190 0.91689 0.91995 0.90912 0.91615 0.86406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.85 13.67 55.48 0.76 -24.09 16 2 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 3 Si 0.94 20.07 29.55 -169.99 -5.02 15.05 16 4 H -0.27 -5.58 7.11 56.52 0.40 -5.17 16 5 H -0.28 -5.81 7.11 56.52 0.40 -5.40 16 6 H -0.27 -5.56 7.11 56.52 0.40 -5.15 16 7 C -0.39 -10.73 9.49 30.89 0.29 -10.43 16 8 H 0.09 2.27 5.20 -52.48 -0.27 2.00 16 9 O -0.18 -4.89 9.76 0.04 0.00 -4.89 16 10 C 0.15 3.49 6.65 -39.11 -0.26 3.23 16 11 C -0.23 -4.68 9.17 -39.40 -0.36 -5.04 16 12 C -0.08 -1.33 10.04 -39.61 -0.40 -1.73 16 13 C -0.19 -3.18 9.70 -39.54 -0.38 -3.56 16 14 C -0.07 -1.23 5.25 -104.65 -0.55 -1.77 16 15 C 0.19 2.83 5.80 -5.19 -0.03 2.80 16 16 N -0.74 -10.31 5.35 -66.42 -0.36 -10.67 16 17 C 0.70 10.32 7.70 -86.92 -0.67 9.65 16 18 O -0.59 -10.62 15.20 5.29 0.08 -10.54 16 19 N -0.61 -7.19 2.89 -174.85 -0.51 -7.70 16 20 C 0.11 1.01 5.63 -4.48 -0.03 0.98 16 21 C -0.13 -0.98 6.15 -26.41 -0.16 -1.14 16 22 C -0.11 -0.78 4.99 -26.81 -0.13 -0.91 16 23 C -0.09 -0.72 2.94 -90.64 -0.27 -0.98 16 24 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 25 C -0.12 -0.79 6.33 -25.52 -0.16 -0.95 16 26 C -0.12 -0.96 6.81 -25.77 -0.18 -1.14 16 27 C -0.12 -1.32 5.52 -26.14 -0.14 -1.47 16 28 C 0.17 1.87 2.53 -69.69 -0.18 1.69 16 29 H 0.07 0.83 7.75 -51.93 -0.40 0.43 16 30 C -0.17 -3.46 9.64 -39.39 -0.38 -3.84 16 31 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 32 H 0.13 2.64 5.64 -52.49 -0.30 2.35 16 33 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 34 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 35 H 0.07 1.04 8.08 -51.93 -0.42 0.62 16 36 H 0.07 1.14 8.08 -51.93 -0.42 0.72 16 37 H 0.40 5.05 5.98 -40.82 -0.24 4.80 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.08 0.73 6.26 -51.93 -0.33 0.40 16 40 H 0.07 0.59 8.12 -51.93 -0.42 0.17 16 41 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.07 0.49 8.05 -51.93 -0.42 0.07 16 44 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 45 H 0.07 0.40 7.80 -51.93 -0.41 0.00 16 46 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 47 H 0.06 0.47 8.14 -51.92 -0.42 0.05 16 48 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 49 H 0.07 0.80 7.76 -51.93 -0.40 0.40 16 50 H 0.12 2.38 8.06 -52.49 -0.42 1.95 16 LS Contribution 393.91 15.07 5.94 5.94 Total: -1.00 -31.44 393.91 -11.00 -42.44 By element: Atomic # 1 Polarization: 15.93 SS G_CDS: -7.81 Total: 8.11 kcal Atomic # 6 Polarization: -9.57 SS G_CDS: -4.08 Total: -13.65 kcal Atomic # 7 Polarization: -42.36 SS G_CDS: -0.10 Total: -42.46 kcal Atomic # 8 Polarization: -15.51 SS G_CDS: 0.08 Total: -15.43 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.05 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -31.44 -11.00 -42.44 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096440243.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.613 kcal (2) G-P(sol) polarization free energy of solvation -31.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds