Wall clock time and date at job start Tue Mar 31 2020 05:49:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31563 * 1 3 3 Si 1.86794 * 119.99727 * 2 1 4 4 H 1.48503 * 109.47288 * 239.99861 * 3 2 1 5 5 H 1.48502 * 109.47328 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47257 * 120.00129 * 3 2 1 7 7 C 1.38649 * 120.00105 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00202 * 179.97438 * 7 2 1 9 9 O 1.34827 * 120.00079 * 0.02562 * 7 2 1 10 10 C 1.35757 * 117.00190 * 185.05916 * 9 7 2 11 11 C 1.38895 * 120.06627 * 354.48270 * 10 9 7 12 12 C 1.38081 * 119.92853 * 179.97438 * 11 10 9 13 13 C 1.38319 * 120.06975 * 359.74692 * 12 11 10 14 14 C 1.38280 * 120.13797 * 0.51000 * 13 12 11 15 15 C 1.50696 * 119.96659 * 179.76833 * 14 13 12 16 16 N 1.46497 * 109.46863 * 269.72402 * 15 14 13 17 17 C 1.34785 * 120.00274 * 179.97438 * 16 15 14 18 18 O 1.21588 * 119.99172 * 0.02562 * 17 16 15 19 19 N 1.34777 * 120.00409 * 179.97438 * 17 16 15 20 20 C 1.45598 * 117.25466 * 359.97438 * 19 17 16 21 21 C 1.53253 * 108.94116 * 206.21339 * 20 19 17 22 22 C 1.52731 * 107.82768 * 302.47480 * 21 20 19 23 23 C 1.51388 * 111.53676 * 65.19485 * 22 21 20 24 24 H 1.08996 * 108.15383 * 84.32320 * 23 22 21 25 25 C 1.54735 * 109.46189 * 202.36626 * 23 22 21 26 26 C 1.55144 * 103.70336 * 149.08514 * 25 23 22 27 27 C 1.55217 * 102.17414 * 320.98818 * 26 25 23 28 28 C 1.43785 * 117.25391 * 179.97438 * 19 17 16 29 29 H 1.08995 * 107.44552 * 60.89422 * 28 19 17 30 30 C 1.38125 * 120.06941 * 359.49072 * 14 13 12 31 31 H 0.96994 * 120.00140 * 359.97438 * 1 2 3 32 32 H 1.08006 * 120.03675 * 359.95797 * 11 10 9 33 33 H 1.08004 * 119.95933 * 180.02562 * 12 11 10 34 34 H 1.07997 * 119.93177 * 180.27720 * 13 12 11 35 35 H 1.08996 * 109.47567 * 149.72346 * 15 14 13 36 36 H 1.09002 * 109.47429 * 29.72173 * 15 14 13 37 37 H 0.96996 * 120.00526 * 359.97438 * 16 15 14 38 38 H 1.09005 * 109.57697 * 326.08534 * 20 19 17 39 39 H 1.09003 * 109.57473 * 86.33995 * 20 19 17 40 40 H 1.08997 * 109.78485 * 61.93178 * 21 20 19 41 41 H 1.08997 * 109.78366 * 182.76541 * 21 20 19 42 42 H 1.09005 * 108.97464 * 304.70045 * 22 21 20 43 43 H 1.08992 * 109.03293 * 185.73348 * 22 21 20 44 44 H 1.09008 * 110.57070 * 30.53175 * 25 23 22 45 45 H 1.08998 * 110.57701 * 267.64622 * 25 23 22 46 46 H 1.09006 * 110.86407 * 202.81996 * 26 25 23 47 47 H 1.08999 * 110.86223 * 79.16245 * 26 25 23 48 48 H 1.08999 * 110.63261 * 281.05570 * 27 26 25 49 49 H 1.09000 * 110.63095 * 158.01776 * 27 26 25 50 50 H 1.07996 * 120.03760 * 180.23780 * 30 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.1033 1.6965 -1.2125 5 1 1.2845 2.7465 -0.0006 6 1 3.1033 1.6965 1.2125 7 6 2.0089 -1.2007 0.0005 8 1 3.0889 -1.2007 0.0001 9 8 1.3348 -2.3684 0.0005 10 6 2.0701 -3.5046 0.1077 11 6 3.4574 -3.4393 0.0957 12 6 4.2025 -4.5967 0.2055 13 6 3.5687 -5.8195 0.3326 14 6 2.1876 -5.8883 0.3395 15 6 1.5011 -7.2231 0.4729 16 7 1.2726 -7.7899 -0.8585 17 6 0.6683 -8.9879 -0.9864 18 8 0.3124 -9.5979 0.0034 19 7 0.4576 -9.5091 -2.2113 20 6 0.9062 -8.7274 -3.3547 21 6 0.0542 -9.0956 -4.5742 22 6 0.1898 -10.5997 -4.8024 23 6 -0.4029 -11.3914 -3.6562 24 1 -1.4742 -11.4913 -3.8306 25 6 0.2241 -12.8057 -3.6278 26 6 0.2114 -13.1833 -2.1231 27 6 0.5817 -11.8372 -1.4447 28 6 -0.1912 -10.7905 -2.2789 29 1 -1.1764 -10.6823 -1.8255 30 6 1.4366 -4.7342 0.2301 31 1 -0.4850 0.8400 0.0004 32 1 3.9530 -2.4844 0.0004 33 1 5.2813 -4.5465 0.1966 34 1 4.1536 -6.7229 0.4228 35 1 0.5455 -7.0912 0.9805 36 1 2.1300 -7.8990 1.0525 37 1 1.5562 -7.3032 -1.6481 38 1 0.7935 -7.6651 -3.1377 39 1 1.9534 -8.9490 -3.5604 40 1 -0.9896 -8.8457 -4.3841 41 1 0.4104 -8.5539 -5.4503 42 1 1.2464 -10.8496 -4.8994 43 1 -0.3258 -10.8672 -5.7246 44 1 1.2455 -12.7795 -4.0077 45 1 -0.3820 -13.5051 -4.2036 46 1 0.9604 -13.9454 -1.9077 47 1 -0.7803 -13.5138 -1.8142 48 1 1.6555 -11.6595 -1.5047 49 1 0.2466 -11.8248 -0.4076 50 1 0.3581 -4.7881 0.2395 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096440244.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:21 Heat of formation + Delta-G solvation = -35.272919 kcal Electronic energy + Delta-G solvation = -29900.029470 eV Core-core repulsion = 25892.390531 eV Total energy + Delta-G solvation = -4007.638939 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.07109 -39.24425 -38.53698 -36.78641 -35.71654 -34.38694 -33.34927 -32.33780 -30.76954 -29.33796 -29.14016 -27.96780 -25.92372 -25.23079 -24.62094 -22.39659 -21.72064 -21.23360 -20.91968 -20.59805 -18.92915 -18.12167 -17.58289 -16.96929 -16.38641 -16.13013 -15.71227 -15.24835 -14.96930 -14.73897 -14.47826 -14.38130 -14.22961 -14.07098 -13.91991 -13.60937 -13.57664 -13.12993 -12.88599 -12.63829 -12.39932 -12.37691 -12.07369 -11.73948 -11.66654 -11.38230 -11.35967 -11.20625 -10.98104 -10.92225 -10.85559 -10.82922 -10.77104 -10.72710 -10.67243 -10.49686 -9.88023 -9.41780 -8.99988 -8.89311 -8.48647 -8.24927 -7.33268 -6.49502 -4.09189 1.87717 2.26549 2.78209 3.09819 3.11230 3.14023 3.25897 3.92039 3.93452 4.21449 4.28738 4.38901 4.53668 4.62295 4.67377 4.93445 4.97235 5.02177 5.06976 5.16808 5.19154 5.29372 5.32601 5.36827 5.36919 5.47709 5.53356 5.54875 5.60741 5.66623 5.71874 5.78603 5.81613 5.85619 5.87998 5.94911 6.05284 6.07289 6.16341 6.17031 6.25466 6.55387 6.61198 6.69269 6.81928 6.90183 6.99812 7.19780 7.27172 7.35298 7.70742 7.94419 7.99584 8.66940 8.95672 9.64425 10.68172 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.019488 B = 0.002101 C = 0.002013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.413238 B =13321.064288 C =13909.316023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.040 3.960 3 Si 0.941 3.059 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.394 4.394 8 H 0.092 0.908 9 O -0.176 6.176 10 C 0.150 3.850 11 C -0.225 4.225 12 C -0.077 4.077 13 C -0.194 4.194 14 C -0.072 4.072 15 C 0.186 3.814 16 N -0.737 5.737 17 C 0.698 3.302 18 O -0.589 6.589 19 N -0.614 5.614 20 C 0.108 3.892 21 C -0.130 4.130 22 C -0.112 4.112 23 C -0.091 4.091 24 H 0.075 0.925 25 C -0.118 4.118 26 C -0.128 4.128 27 C -0.127 4.127 28 C 0.173 3.827 29 H 0.060 0.940 30 C -0.171 4.171 31 H 0.271 0.729 32 H 0.127 0.873 33 H 0.109 0.891 34 H 0.107 0.893 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.398 0.602 38 H 0.077 0.923 39 H 0.062 0.938 40 H 0.071 0.929 41 H 0.081 0.919 42 H 0.064 0.936 43 H 0.066 0.934 44 H 0.068 0.932 45 H 0.066 0.934 46 H 0.067 0.933 47 H 0.068 0.932 48 H 0.063 0.937 49 H 0.084 0.916 50 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.479 -21.218 -9.421 23.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.165 4.165 3 Si 0.766 3.234 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.195 1.195 7 C -0.470 4.470 8 H 0.109 0.891 9 O -0.079 6.079 10 C 0.096 3.904 11 C -0.245 4.245 12 C -0.095 4.095 13 C -0.214 4.214 14 C -0.073 4.073 15 C 0.062 3.938 16 N -0.393 5.393 17 C 0.399 3.601 18 O -0.467 6.467 19 N -0.351 5.351 20 C -0.015 4.015 21 C -0.168 4.168 22 C -0.149 4.149 23 C -0.110 4.110 24 H 0.093 0.907 25 C -0.156 4.156 26 C -0.166 4.166 27 C -0.166 4.166 28 C 0.069 3.931 29 H 0.078 0.922 30 C -0.191 4.191 31 H 0.081 0.919 32 H 0.145 0.855 33 H 0.127 0.873 34 H 0.125 0.875 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.235 0.765 38 H 0.095 0.905 39 H 0.081 0.919 40 H 0.090 0.910 41 H 0.100 0.900 42 H 0.083 0.917 43 H 0.085 0.915 44 H 0.086 0.914 45 H 0.085 0.915 46 H 0.086 0.914 47 H 0.087 0.913 48 H 0.082 0.918 49 H 0.103 0.897 50 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 1.738 -21.446 -8.739 23.223 hybrid contribution 0.707 1.251 -0.430 1.500 sum 2.445 -20.195 -9.169 22.313 Atomic orbital electron populations 1.70027 1.05963 1.27872 1.45724 1.25294 0.95849 0.98856 0.96475 0.85780 0.78711 0.79744 0.79198 1.19498 1.20252 1.19465 1.21270 0.91759 0.80784 1.53154 0.89101 1.83984 1.34255 1.11391 1.78320 1.19327 0.90263 0.88071 0.92722 1.21239 0.93837 0.99073 1.10352 1.20745 0.98551 0.92268 0.97927 1.20482 0.93359 0.97114 1.10399 1.19290 0.93481 0.92889 1.01625 1.19990 0.99873 0.90917 0.82995 1.45480 1.64007 1.19898 1.09951 1.15968 0.79170 0.81375 0.83549 1.90882 1.57473 1.61708 1.36633 1.46174 1.64014 1.20156 1.04804 1.21457 0.98182 0.95408 0.86445 1.21758 1.00916 0.96495 0.97614 1.21190 1.01482 0.94621 0.97646 1.21240 1.00918 0.95444 0.93413 0.90664 1.22662 1.00811 0.95153 0.96976 1.22601 1.01594 0.97453 0.94980 1.22925 1.00179 0.93021 1.00453 1.20175 0.95907 0.81880 0.95168 0.92177 1.20093 0.99442 0.89832 1.09685 0.91900 0.85487 0.87309 0.87520 0.91083 0.91164 0.76545 0.90452 0.91937 0.90995 0.90040 0.91687 0.91483 0.91366 0.91504 0.91435 0.91319 0.91800 0.89746 0.86412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.89 13.67 55.48 0.76 -24.13 16 2 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 3 Si 0.94 20.12 29.55 -169.99 -5.02 15.09 16 4 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 5 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 6 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 7 C -0.39 -10.74 9.49 30.88 0.29 -10.44 16 8 H 0.09 2.28 5.20 -52.48 -0.27 2.00 16 9 O -0.18 -4.90 9.76 0.04 0.00 -4.90 16 10 C 0.15 3.49 6.65 -39.11 -0.26 3.23 16 11 C -0.23 -4.68 9.17 -39.40 -0.36 -5.04 16 12 C -0.08 -1.33 10.04 -39.61 -0.40 -1.73 16 13 C -0.19 -3.17 9.70 -39.54 -0.38 -3.56 16 14 C -0.07 -1.23 5.25 -104.65 -0.55 -1.77 16 15 C 0.19 2.82 5.80 -5.20 -0.03 2.79 16 16 N -0.74 -10.24 5.36 -66.42 -0.36 -10.60 16 17 C 0.70 10.26 7.84 -86.91 -0.68 9.58 16 18 O -0.59 -10.45 14.28 5.29 0.08 -10.37 16 19 N -0.61 -7.19 3.00 -174.11 -0.52 -7.71 16 20 C 0.11 0.99 5.70 -4.40 -0.03 0.97 16 21 C -0.13 -0.97 6.10 -26.74 -0.16 -1.13 16 22 C -0.11 -0.77 5.27 -27.68 -0.15 -0.91 16 23 C -0.09 -0.72 2.90 -91.16 -0.26 -0.99 16 24 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 25 C -0.12 -0.82 6.31 -24.68 -0.16 -0.98 16 26 C -0.13 -1.03 6.94 -24.42 -0.17 -1.20 16 27 C -0.13 -1.38 5.24 -24.74 -0.13 -1.51 16 28 C 0.17 1.87 2.63 -69.19 -0.18 1.69 16 29 H 0.06 0.74 8.11 -51.93 -0.42 0.32 16 30 C -0.17 -3.45 9.65 -39.39 -0.38 -3.83 16 31 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 32 H 0.13 2.64 5.64 -52.48 -0.30 2.35 16 33 H 0.11 1.58 8.06 -52.48 -0.42 1.16 16 34 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 35 H 0.07 1.14 8.08 -51.93 -0.42 0.72 16 36 H 0.07 1.04 8.08 -51.93 -0.42 0.62 16 37 H 0.40 4.99 6.02 -40.82 -0.25 4.75 16 38 H 0.08 0.72 6.31 -51.93 -0.33 0.39 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.06 0.45 7.52 -51.93 -0.39 0.06 16 43 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.07 0.47 7.54 -51.92 -0.39 0.08 16 45 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 46 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 49 H 0.08 1.11 7.04 -51.93 -0.37 0.74 16 50 H 0.12 2.38 8.06 -52.49 -0.42 1.95 16 LS Contribution 392.39 15.07 5.91 5.91 Total: -1.00 -31.34 392.39 -10.99 -42.33 By element: Atomic # 1 Polarization: 15.99 SS G_CDS: -7.76 Total: 8.23 kcal Atomic # 6 Polarization: -9.78 SS G_CDS: -4.08 Total: -13.86 kcal Atomic # 7 Polarization: -42.32 SS G_CDS: -0.12 Total: -42.44 kcal Atomic # 8 Polarization: -15.34 SS G_CDS: 0.08 Total: -15.27 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.09 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -31.34 -10.99 -42.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096440244.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.058 kcal (2) G-P(sol) polarization free energy of solvation -31.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds