Wall clock time and date at job start Tue Mar 31 2020 05:49:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31554 * 1 3 3 Si 1.86793 * 120.00436 * 2 1 4 4 H 1.48502 * 109.47311 * 270.00278 * 3 2 1 5 5 H 1.48502 * 109.47107 * 29.99999 * 3 2 1 6 6 H 1.48496 * 109.47332 * 150.00117 * 3 2 1 7 7 C 1.38660 * 119.99680 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99736 * 180.02562 * 7 2 1 9 9 O 1.34828 * 119.99844 * 359.97438 * 7 2 1 10 10 C 1.35756 * 116.99782 * 174.97567 * 9 7 2 11 11 C 1.38904 * 120.06929 * 5.25621 * 10 9 7 12 12 C 1.38075 * 119.92976 * 180.02562 * 11 10 9 13 13 C 1.38323 * 120.07059 * 0.02562 * 12 11 10 14 14 C 1.38281 * 120.13806 * 0.02562 * 13 12 11 15 15 C 1.50697 * 119.96480 * 180.02562 * 14 13 12 16 16 N 1.46505 * 109.47535 * 89.99842 * 15 14 13 17 17 C 1.34770 * 119.99765 * 180.02562 * 16 15 14 18 18 O 1.21593 * 120.00369 * 5.05826 * 17 16 15 19 19 N 1.34785 * 119.99683 * 185.05997 * 17 16 15 20 20 C 1.47907 * 122.26705 * 354.53872 * 19 17 16 21 21 C 1.52703 * 111.06409 * 127.94286 * 20 19 17 22 22 C 1.53867 * 111.62928 * 48.39914 * 21 20 19 23 23 C 1.51329 * 107.21966 * 302.84152 * 22 21 20 24 24 H 1.09000 * 109.12482 * 307.47380 * 23 22 21 25 25 C 1.52208 * 117.79046 * 181.73766 * 23 22 21 26 26 C 1.55059 * 105.12494 * 212.11752 * 25 23 22 27 27 C 1.55466 * 106.32211 * 3.91131 * 26 25 23 28 28 C 1.45519 * 122.26746 * 174.55959 * 19 17 16 29 29 H 1.09007 * 110.93745 * 120.47668 * 28 19 17 30 30 C 1.38122 * 120.06762 * 0.26981 * 14 13 12 31 31 H 0.97002 * 119.99995 * 359.97438 * 1 2 3 32 32 H 1.07993 * 120.03481 * 359.97438 * 11 10 9 33 33 H 1.07995 * 119.96242 * 180.02562 * 12 11 10 34 34 H 1.07995 * 119.93387 * 180.02562 * 13 12 11 35 35 H 1.09000 * 109.47238 * 329.99269 * 15 14 13 36 36 H 1.09000 * 109.47234 * 209.99866 * 15 14 13 37 37 H 0.96993 * 119.99881 * 359.97438 * 16 15 14 38 38 H 1.08992 * 109.16364 * 7.53651 * 20 19 17 39 39 H 1.09004 * 109.15936 * 248.35241 * 20 19 17 40 40 H 1.09001 * 109.04861 * 287.84857 * 21 20 19 41 41 H 1.08995 * 108.99345 * 168.90963 * 21 20 19 42 42 H 1.09006 * 109.90405 * 183.41671 * 22 21 20 43 43 H 1.08994 * 109.90488 * 62.27288 * 22 21 20 44 44 H 1.09002 * 110.31127 * 331.02890 * 25 23 22 45 45 H 1.09004 * 110.30839 * 93.09986 * 25 23 22 46 46 H 1.09000 * 110.08664 * 123.12825 * 26 25 23 47 47 H 1.09003 * 110.08574 * 244.64041 * 26 25 23 48 48 H 1.08995 * 110.74412 * 265.76875 * 27 26 25 49 49 H 1.08993 * 110.74405 * 142.42095 * 27 26 25 50 50 H 1.08007 * 120.03351 * 179.70704 * 30 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6176 0.0000 4 1 2.4971 2.0463 -1.4001 5 1 1.4471 2.6526 0.7000 6 1 3.5472 1.4400 0.7000 7 6 2.0088 -1.2009 -0.0005 8 1 3.0888 -1.2009 -0.0001 9 8 1.3345 -2.3685 -0.0005 10 6 2.0698 -3.5047 -0.1070 11 6 3.4573 -3.4391 -0.0997 12 6 4.2023 -4.5965 -0.2087 13 6 3.5684 -5.8203 -0.3256 14 6 2.1873 -5.8889 -0.3342 15 6 1.5007 -7.2243 -0.4612 16 7 1.2761 -7.7868 0.8728 17 6 0.6725 -8.9844 1.0062 18 8 0.3974 -9.6399 0.0197 19 7 0.3738 -9.4555 2.2332 20 6 0.7897 -8.7584 3.4695 21 6 -0.3997 -8.5362 4.4010 22 6 -1.2225 -9.8230 4.5871 23 6 -1.6608 -10.2773 3.2118 24 1 -2.1512 -9.4485 2.7013 25 6 -2.5330 -11.5213 3.1199 26 6 -2.1452 -12.1889 1.7752 27 6 -0.9798 -11.3440 1.1880 28 6 -0.3794 -10.6848 2.4312 29 1 0.2010 -11.4095 3.0023 30 6 1.4364 -4.7341 -0.2317 31 1 -0.4850 0.8401 0.0004 32 1 3.9528 -2.4838 -0.0098 33 1 5.2810 -4.5461 -0.2027 34 1 4.1532 -6.7242 -0.4103 35 1 2.1282 -7.9019 -1.0403 36 1 0.5437 -7.0943 -0.9665 37 1 1.5624 -7.2977 1.6599 38 1 1.2239 -7.7936 3.2075 39 1 1.5397 -9.3592 3.9840 40 1 -1.0411 -7.7616 3.9804 41 1 -0.0326 -8.2052 5.3724 42 1 -2.0960 -9.6187 5.2064 43 1 -0.6074 -10.5925 5.0536 44 1 -2.3215 -12.1940 3.9511 45 1 -3.5874 -11.2447 3.1167 46 1 -1.8152 -13.2134 1.9473 47 1 -2.9958 -12.1796 1.0936 48 1 -1.3587 -10.5913 0.4967 49 1 -0.2466 -11.9851 0.6987 50 1 0.3578 -4.7878 -0.2433 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096440245.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:27 Heat of formation + Delta-G solvation = -33.730042 kcal Electronic energy + Delta-G solvation = -29981.066453 eV Core-core repulsion = 25973.494418 eV Total energy + Delta-G solvation = -4007.572035 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -40.92071 -39.25269 -38.50788 -36.77690 -35.66524 -34.34306 -33.04918 -32.34380 -30.74694 -29.18806 -29.09801 -27.99520 -26.03605 -25.28472 -24.50113 -21.93244 -21.77169 -21.54787 -20.73804 -20.19120 -19.78610 -18.05193 -17.42106 -16.90103 -16.47736 -15.73700 -15.39006 -15.15660 -15.03776 -14.70833 -14.64431 -14.46222 -14.20460 -13.77098 -13.67683 -13.63455 -13.53354 -13.42950 -12.87157 -12.65655 -12.40628 -12.31291 -12.11340 -11.69383 -11.60309 -11.48650 -11.36068 -11.14610 -10.96726 -10.94459 -10.85373 -10.80226 -10.76330 -10.69508 -10.57075 -10.48493 -9.68182 -9.42076 -8.98022 -8.90298 -8.48093 -8.25546 -7.33893 -6.50381 -4.09907 1.86528 2.25781 2.73135 3.09068 3.10302 3.14691 3.25655 3.86840 3.91473 4.25098 4.42762 4.49627 4.53741 4.68559 4.81634 4.93057 4.95601 5.06147 5.07960 5.15014 5.16905 5.28802 5.35541 5.37854 5.44019 5.53326 5.55001 5.61365 5.68555 5.73353 5.77868 5.84204 5.85064 5.85557 5.89397 5.95344 6.06654 6.13164 6.20005 6.24453 6.25542 6.54188 6.58165 6.62838 6.81201 6.96786 7.02195 7.19137 7.26713 7.34706 7.70085 7.93737 8.00709 8.67367 8.95024 9.63776 10.67424 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.016099 B = 0.002230 C = 0.002104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1738.802025 B =12554.211808 C =13304.260024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.040 3.960 3 Si 0.941 3.059 4 H -0.273 1.273 5 H -0.277 1.277 6 H -0.267 1.267 7 C -0.393 4.393 8 H 0.092 0.908 9 O -0.176 6.176 10 C 0.150 3.850 11 C -0.225 4.225 12 C -0.077 4.077 13 C -0.194 4.194 14 C -0.072 4.072 15 C 0.186 3.814 16 N -0.738 5.738 17 C 0.711 3.289 18 O -0.587 6.587 19 N -0.625 5.625 20 C 0.113 3.887 21 C -0.135 4.135 22 C -0.106 4.106 23 C -0.115 4.115 24 H 0.075 0.925 25 C -0.114 4.114 26 C -0.128 4.128 27 C -0.107 4.107 28 C 0.156 3.844 29 H 0.074 0.926 30 C -0.170 4.170 31 H 0.271 0.729 32 H 0.128 0.872 33 H 0.109 0.891 34 H 0.107 0.893 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.396 0.604 38 H 0.079 0.921 39 H 0.066 0.934 40 H 0.068 0.932 41 H 0.077 0.923 42 H 0.066 0.934 43 H 0.065 0.935 44 H 0.064 0.936 45 H 0.065 0.935 46 H 0.062 0.938 47 H 0.065 0.935 48 H 0.089 0.911 49 H 0.069 0.931 50 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.018 -19.879 8.967 21.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.165 4.165 3 Si 0.766 3.234 4 H -0.198 1.198 5 H -0.202 1.202 6 H -0.192 1.192 7 C -0.469 4.469 8 H 0.110 0.890 9 O -0.080 6.080 10 C 0.096 3.904 11 C -0.245 4.245 12 C -0.095 4.095 13 C -0.214 4.214 14 C -0.073 4.073 15 C 0.063 3.937 16 N -0.395 5.395 17 C 0.413 3.587 18 O -0.466 6.466 19 N -0.362 5.362 20 C -0.010 4.010 21 C -0.174 4.174 22 C -0.143 4.143 23 C -0.134 4.134 24 H 0.093 0.907 25 C -0.152 4.152 26 C -0.167 4.167 27 C -0.145 4.145 28 C 0.051 3.949 29 H 0.092 0.908 30 C -0.190 4.190 31 H 0.081 0.919 32 H 0.145 0.855 33 H 0.127 0.873 34 H 0.125 0.875 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.233 0.767 38 H 0.097 0.903 39 H 0.085 0.915 40 H 0.087 0.913 41 H 0.095 0.905 42 H 0.085 0.915 43 H 0.083 0.917 44 H 0.083 0.917 45 H 0.084 0.916 46 H 0.081 0.919 47 H 0.084 0.916 48 H 0.107 0.893 49 H 0.088 0.912 50 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -0.619 -20.094 8.208 21.715 hybrid contribution 0.745 1.287 0.469 1.560 sum 0.126 -18.807 8.678 20.713 Atomic orbital electron populations 1.70036 1.05976 1.27761 1.45811 1.25296 0.95846 0.98859 0.96475 0.85709 0.78903 0.80039 0.78774 1.19826 1.20229 1.19195 1.21323 0.91788 0.80771 1.53058 0.89047 1.83985 1.34263 1.11397 1.78333 1.19327 0.90260 0.88073 0.92720 1.21241 0.93838 0.99083 1.10328 1.20746 0.98563 0.92261 0.97927 1.20488 0.93367 0.97100 1.10397 1.19292 0.93486 0.92882 1.01645 1.19985 0.99863 0.90952 0.82881 1.45447 1.64202 1.19976 1.09837 1.15806 0.78629 0.81396 0.82893 1.90894 1.60197 1.58732 1.36734 1.47081 1.59355 1.25667 1.04103 1.21615 0.96728 0.97347 0.85287 1.21931 0.97386 0.98446 0.99622 1.21316 0.99549 0.97062 0.96408 1.22007 0.96203 0.98439 0.96792 0.90669 1.21823 0.99335 0.96328 0.97684 1.22633 0.98660 0.99019 0.96346 1.22339 0.96732 0.99234 0.96216 1.21592 0.90738 0.85150 0.97396 0.90782 1.20089 0.99419 0.89836 1.09697 0.91950 0.85476 0.87300 0.87502 0.91093 0.91181 0.76737 0.90304 0.91520 0.91284 0.90476 0.91531 0.91674 0.91692 0.91637 0.91895 0.91644 0.89257 0.91200 0.86441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.87 13.67 55.48 0.76 -24.11 16 2 C 0.04 1.07 5.49 -17.51 -0.10 0.98 16 3 Si 0.94 20.11 29.55 -169.99 -5.02 15.08 16 4 H -0.27 -5.71 7.11 56.52 0.40 -5.30 16 5 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 6 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 7 C -0.39 -10.72 9.49 30.89 0.29 -10.43 16 8 H 0.09 2.30 5.20 -52.48 -0.27 2.02 16 9 O -0.18 -4.90 9.76 0.04 0.00 -4.90 16 10 C 0.15 3.48 6.65 -39.11 -0.26 3.22 16 11 C -0.23 -4.68 9.17 -39.39 -0.36 -5.04 16 12 C -0.08 -1.33 10.04 -39.61 -0.40 -1.73 16 13 C -0.19 -3.18 9.70 -39.53 -0.38 -3.56 16 14 C -0.07 -1.23 5.25 -104.65 -0.55 -1.78 16 15 C 0.19 2.82 5.80 -5.19 -0.03 2.79 16 16 N -0.74 -10.22 5.48 -66.41 -0.36 -10.58 16 17 C 0.71 10.36 8.28 -86.92 -0.72 9.64 16 18 O -0.59 -10.21 13.39 5.28 0.07 -10.14 16 19 N -0.62 -7.22 2.92 -170.05 -0.50 -7.72 16 20 C 0.11 1.00 6.41 -3.42 -0.02 0.98 16 21 C -0.14 -1.06 5.93 -26.43 -0.16 -1.22 16 22 C -0.11 -0.78 5.72 -27.12 -0.16 -0.94 16 23 C -0.11 -1.03 2.29 -90.55 -0.21 -1.23 16 24 H 0.07 0.83 8.08 -51.93 -0.42 0.41 16 25 C -0.11 -0.88 6.53 -26.05 -0.17 -1.05 16 26 C -0.13 -1.09 6.88 -24.33 -0.17 -1.26 16 27 C -0.11 -1.21 4.81 -25.43 -0.12 -1.34 16 28 C 0.16 1.62 3.02 -67.15 -0.20 1.42 16 29 H 0.07 0.70 8.08 -51.93 -0.42 0.28 16 30 C -0.17 -3.45 9.64 -39.39 -0.38 -3.83 16 31 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 32 H 0.13 2.65 5.64 -52.49 -0.30 2.35 16 33 H 0.11 1.59 8.06 -52.49 -0.42 1.16 16 34 H 0.11 1.52 8.06 -52.49 -0.42 1.09 16 35 H 0.07 1.05 8.08 -51.93 -0.42 0.63 16 36 H 0.07 1.11 8.08 -51.93 -0.42 0.69 16 37 H 0.40 4.98 6.08 -40.82 -0.25 4.73 16 38 H 0.08 0.69 5.76 -51.93 -0.30 0.40 16 39 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.06 0.43 8.07 -51.93 -0.42 0.01 16 44 H 0.06 0.43 8.11 -51.93 -0.42 0.01 16 45 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 48 H 0.09 1.26 6.54 -51.93 -0.34 0.92 16 49 H 0.07 0.84 8.11 -51.93 -0.42 0.42 16 50 H 0.12 2.36 8.06 -52.48 -0.42 1.94 16 LS Contribution 392.49 15.07 5.91 5.91 Total: -1.00 -31.08 392.49 -10.99 -42.07 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: -7.76 Total: 8.75 kcal Atomic # 6 Polarization: -10.28 SS G_CDS: -4.09 Total: -14.37 kcal Atomic # 7 Polarization: -42.31 SS G_CDS: -0.10 Total: -42.41 kcal Atomic # 8 Polarization: -15.11 SS G_CDS: 0.07 Total: -15.04 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.08 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -31.08 -10.99 -42.07 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096440245.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.339 kcal (2) G-P(sol) polarization free energy of solvation -31.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds