Wall clock time and date at job start Tue Mar 31 2020 06:32:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99774 * 2 1 4 4 H 1.48504 * 109.47209 * 269.99978 * 3 2 1 5 5 H 1.48506 * 109.47294 * 29.99826 * 3 2 1 6 6 H 1.48501 * 109.47275 * 149.99729 * 3 2 1 7 7 C 1.37871 * 120.00481 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00205 * 359.72747 * 7 2 1 9 9 C 1.50706 * 120.00436 * 180.02562 * 7 2 1 10 10 N 1.46493 * 109.47128 * 179.72498 * 9 7 2 11 11 C 1.46497 * 120.00235 * 269.99530 * 10 9 7 12 12 C 1.53008 * 109.46926 * 90.00466 * 11 10 9 13 13 F 1.39903 * 109.47044 * 59.99764 * 12 11 10 14 14 F 1.39898 * 109.47051 * 180.02562 * 12 11 10 15 15 F 1.39897 * 109.46810 * 300.00386 * 12 11 10 16 16 C 1.34783 * 120.00107 * 90.00402 * 10 9 7 17 17 O 1.21284 * 119.99626 * 359.97438 * 16 10 9 18 18 C 1.50696 * 120.00310 * 179.97438 * 16 10 9 19 19 H 1.09000 * 115.54855 * 325.58001 * 18 16 10 20 20 C 1.53000 * 117.49873 * 111.25030 * 18 16 10 21 21 C 1.53005 * 117.49975 * 179.90867 * 18 16 10 22 22 H 1.08993 * 117.49309 * 145.01831 * 21 18 16 23 23 C 1.50694 * 117.49816 * 0.02562 * 21 18 16 24 24 C 1.38248 * 119.97259 * 299.71950 * 23 21 18 25 25 C 1.38202 * 120.02480 * 179.77059 * 24 23 21 26 26 C 1.38458 * 119.97314 * 0.50478 * 25 24 23 27 27 F 1.35097 * 120.02451 * 179.76842 * 26 25 24 28 28 C 1.38454 * 119.94956 * 359.74950 * 26 25 24 29 29 C 1.38204 * 119.97697 * 359.97438 * 28 26 25 30 30 H 0.96995 * 120.00207 * 0.02562 * 1 2 3 31 31 H 1.09001 * 109.46564 * 299.72974 * 9 7 2 32 32 H 1.08998 * 109.47012 * 59.72028 * 9 7 2 33 33 H 1.08998 * 109.47569 * 210.00215 * 11 10 9 34 34 H 1.08997 * 109.47185 * 330.00886 * 11 10 9 35 35 H 1.09009 * 117.49336 * 214.97819 * 20 18 16 36 36 H 1.08993 * 117.50071 * 359.97438 * 20 18 16 37 37 H 1.07997 * 119.98937 * 0.02747 * 24 23 21 38 38 H 1.07999 * 120.01140 * 180.26343 * 25 24 23 39 39 H 1.08004 * 120.01616 * 179.97438 * 28 26 25 40 40 H 1.07995 * 119.99071 * 180.02562 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1939 0.0005 8 1 1.4647 -2.1293 0.0054 9 6 3.5117 -1.1939 0.0011 10 7 4.0000 -2.5751 0.0082 11 6 4.2438 -3.2593 1.2805 12 6 2.9686 -3.9784 1.7253 13 9 2.5992 -4.9160 0.7548 14 9 3.2012 -4.6314 2.9405 15 9 1.9393 -3.0450 1.8874 16 6 4.2252 -3.2163 -1.1557 17 8 4.0230 -2.6499 -2.2090 18 6 4.7280 -4.6368 -1.1484 19 1 5.4087 -4.8904 -0.3357 20 6 3.7715 -5.7273 -1.6350 21 6 4.9621 -5.3104 -2.5022 22 1 5.7965 -6.0072 -2.5799 23 6 4.6726 -4.5022 -3.7407 24 6 3.3976 -4.0181 -3.9672 25 6 3.1321 -3.2728 -5.1003 26 6 4.1411 -3.0199 -6.0141 27 9 3.8815 -2.2955 -7.1245 28 6 5.4163 -3.5097 -5.7888 29 6 5.6810 -4.2500 -4.6522 30 1 -0.4850 0.8400 -0.0004 31 1 3.8752 -0.6845 -0.8913 32 1 3.8746 -0.6756 0.8886 33 1 5.0457 -3.9866 1.1541 34 1 4.5315 -2.5288 2.0366 35 1 3.8233 -6.6985 -1.1427 36 1 2.7784 -5.4174 -1.9600 37 1 2.6098 -4.2189 -3.2563 38 1 2.1370 -2.8912 -5.2749 39 1 6.2041 -3.3134 -6.5011 40 1 6.6757 -4.6318 -4.4760 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096444429.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:19 Heat of formation + Delta-G solvation = -159.035666 kcal Electronic energy + Delta-G solvation = -31769.822003 eV Core-core repulsion = 26857.947507 eV Total energy + Delta-G solvation = -4911.874496 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.109 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.53845 -48.60531 -47.16306 -46.84773 -40.32775 -38.46478 -36.26143 -35.27810 -32.65206 -30.84477 -30.01023 -29.60513 -27.69993 -24.49564 -23.70074 -23.08362 -22.62386 -21.76530 -20.43558 -18.88311 -18.14244 -18.02110 -17.61354 -17.21506 -16.95390 -16.44495 -15.86322 -15.74748 -15.29163 -14.93391 -14.71179 -14.33109 -14.05887 -14.00492 -13.81796 -13.64105 -13.43983 -13.31784 -13.14374 -13.05380 -12.95123 -12.84201 -12.56237 -12.44719 -12.32281 -11.91979 -11.83637 -11.63217 -11.37865 -11.00605 -10.77597 -10.61197 -10.46870 -10.36848 -10.20918 -9.53761 -9.34672 -8.64349 -8.59778 -8.09613 -7.91319 -6.08931 -4.07719 1.39642 1.60596 2.76678 3.17896 3.27004 3.31337 3.33737 3.40994 3.77891 4.15461 4.26042 4.36032 4.37377 4.41662 4.57184 4.71421 4.82603 4.87476 4.99682 5.00859 5.16387 5.18551 5.22959 5.32255 5.40724 5.51166 5.64478 5.74428 5.80909 6.05608 6.19536 6.30177 6.42318 6.48618 6.59268 6.78444 6.82474 7.00492 7.20972 7.52740 7.85350 8.41215 8.68735 8.96560 9.49489 11.03951 Molecular weight = 345.11amu Principal moments of inertia in cm(-1) A = 0.009581 B = 0.005205 C = 0.003748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2921.675329 B = 5378.447129 C = 7468.216677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.076 3.924 3 Si 0.870 3.130 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.267 1.267 7 C -0.526 4.526 8 H 0.084 0.916 9 C 0.214 3.786 10 N -0.589 5.589 11 C 0.076 3.924 12 C 0.424 3.576 13 F -0.184 7.184 14 F -0.197 7.197 15 F -0.147 7.147 16 C 0.539 3.461 17 O -0.502 6.502 18 C -0.185 4.185 19 H 0.122 0.878 20 C -0.136 4.136 21 C -0.086 4.086 22 H 0.120 0.880 23 C -0.056 4.056 24 C -0.018 4.018 25 C -0.154 4.154 26 C 0.093 3.907 27 F -0.148 7.148 28 C -0.167 4.167 29 C -0.087 4.087 30 H 0.264 0.736 31 H 0.043 0.957 32 H 0.031 0.969 33 H 0.110 0.890 34 H 0.118 0.882 35 H 0.107 0.893 36 H 0.106 0.894 37 H 0.126 0.874 38 H 0.130 0.870 39 H 0.126 0.874 40 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.511 -12.512 -1.368 17.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.126 4.126 3 Si 0.697 3.303 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.192 1.192 7 C -0.565 4.565 8 H 0.102 0.898 9 C 0.094 3.906 10 N -0.320 5.320 11 C -0.051 4.051 12 C 0.368 3.632 13 F -0.166 7.166 14 F -0.179 7.179 15 F -0.128 7.128 16 C 0.326 3.674 17 O -0.377 6.377 18 C -0.206 4.206 19 H 0.140 0.860 20 C -0.173 4.173 21 C -0.104 4.104 22 H 0.138 0.862 23 C -0.056 4.056 24 C -0.036 4.036 25 C -0.173 4.173 26 C 0.074 3.926 27 F -0.127 7.127 28 C -0.186 4.186 29 C -0.105 4.105 30 H 0.074 0.926 31 H 0.061 0.939 32 H 0.049 0.951 33 H 0.128 0.872 34 H 0.136 0.864 35 H 0.126 0.874 36 H 0.124 0.876 37 H 0.144 0.856 38 H 0.148 0.852 39 H 0.144 0.856 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 12.191 -12.009 -1.990 17.228 hybrid contribution 0.036 1.123 0.280 1.158 sum 12.228 -10.886 -1.710 16.460 Atomic orbital electron populations 1.69880 1.06110 1.26847 1.50276 1.24792 0.94684 0.98599 0.94569 0.86967 0.80182 0.84374 0.78796 1.20006 1.21082 1.19218 1.21344 0.88618 0.95276 1.51237 0.89816 1.19858 0.96438 0.76433 0.97869 1.47876 1.65291 1.15901 1.02958 1.22577 0.92852 0.99144 0.90552 1.21419 0.89241 0.78040 0.74472 1.93158 1.93085 1.67174 1.63184 1.93131 1.94787 1.82899 1.47113 1.93428 1.60758 1.63637 1.94953 1.19532 0.77658 0.86478 0.83723 1.90762 1.50710 1.67033 1.29196 1.22441 1.05547 0.93230 0.99397 0.86028 1.23108 0.95544 0.97624 1.01055 1.21060 1.01024 1.00178 0.88146 0.86209 1.18862 0.93613 0.98864 0.94240 1.20687 0.96404 0.92715 0.93805 1.21009 0.99275 1.01884 0.95113 1.17685 0.94662 0.95631 0.84647 1.91453 1.94826 1.75676 1.50734 1.20863 0.95304 1.02442 0.99999 1.20569 0.98473 0.98279 0.93226 0.92601 0.93914 0.95077 0.87240 0.86378 0.87420 0.87594 0.85633 0.85224 0.85569 0.85828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.98 13.96 55.43 0.77 -26.21 16 2 C 0.08 2.15 5.47 -17.82 -0.10 2.05 16 3 Si 0.87 21.04 27.47 -169.99 -4.67 16.37 16 4 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.27 -6.03 6.53 56.52 0.37 -5.66 16 7 C -0.53 -14.21 8.24 -34.44 -0.28 -14.49 16 8 H 0.08 2.49 6.67 -52.49 -0.35 2.14 16 9 C 0.21 4.81 4.21 -5.19 -0.02 4.79 16 10 N -0.59 -10.74 2.40 -175.06 -0.42 -11.16 16 11 C 0.08 1.05 5.38 -4.04 -0.02 1.03 16 12 C 0.42 6.76 3.29 37.16 0.12 6.89 16 13 F -0.18 -2.97 14.28 2.25 0.03 -2.93 16 14 F -0.20 -2.81 17.32 2.25 0.04 -2.77 16 15 F -0.15 -3.07 13.87 2.25 0.03 -3.04 16 16 C 0.54 9.58 6.99 -10.98 -0.08 9.50 16 17 O -0.50 -10.64 11.31 5.55 0.06 -10.58 16 18 C -0.19 -2.35 4.41 -91.77 -0.41 -2.75 16 19 H 0.12 1.17 6.44 -51.93 -0.33 0.83 16 20 C -0.14 -1.59 7.99 -26.69 -0.21 -1.80 16 21 C -0.09 -0.99 6.04 -91.73 -0.55 -1.54 16 22 H 0.12 1.02 8.14 -51.93 -0.42 0.60 16 23 C -0.06 -0.79 4.35 -104.62 -0.46 -1.24 16 24 C -0.02 -0.29 6.19 -39.59 -0.24 -0.54 16 25 C -0.15 -2.58 10.03 -39.51 -0.40 -2.97 16 26 C 0.09 1.49 7.30 -39.42 -0.29 1.20 16 27 F -0.15 -2.42 17.27 2.25 0.04 -2.38 16 28 C -0.17 -2.33 10.03 -39.51 -0.40 -2.72 16 29 C -0.09 -1.14 9.73 -39.59 -0.39 -1.52 16 30 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 31 H 0.04 1.04 6.86 -51.93 -0.36 0.68 16 32 H 0.03 0.67 6.93 -51.93 -0.36 0.31 16 33 H 0.11 1.05 6.00 -51.93 -0.31 0.74 16 34 H 0.12 1.42 7.89 -51.93 -0.41 1.01 16 35 H 0.11 0.98 8.14 -51.92 -0.42 0.55 16 36 H 0.11 1.45 6.18 -51.93 -0.32 1.13 16 37 H 0.13 2.13 5.80 -52.49 -0.30 1.83 16 38 H 0.13 2.10 8.06 -52.49 -0.42 1.68 16 39 H 0.13 1.46 8.06 -52.48 -0.42 1.03 16 40 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 LS Contribution 339.81 15.07 5.12 5.12 Total: -1.00 -32.92 339.81 -6.74 -39.66 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -4.03 Total: 2.05 kcal Atomic # 6 Polarization: -0.41 SS G_CDS: -3.72 Total: -4.13 kcal Atomic # 7 Polarization: -37.72 SS G_CDS: 0.35 Total: -37.37 kcal Atomic # 8 Polarization: -10.64 SS G_CDS: 0.06 Total: -10.58 kcal Atomic # 9 Polarization: -11.27 SS G_CDS: 0.14 Total: -11.13 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -4.67 Total: 16.37 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.92 -6.74 -39.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096444429.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.378 kcal (2) G-P(sol) polarization free energy of solvation -32.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds