Wall clock time and date at job start Tue Mar 31 2020 06:32:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00241 * 2 1 4 4 H 1.48500 * 109.47394 * 270.00199 * 3 2 1 5 5 H 1.48502 * 109.47131 * 30.00011 * 3 2 1 6 6 H 1.48494 * 109.47428 * 149.99872 * 3 2 1 7 7 C 1.37878 * 120.00057 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00202 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99992 * 0.02562 * 7 2 1 10 10 N 1.46501 * 109.47397 * 179.97438 * 9 7 2 11 11 C 1.46497 * 120.00185 * 270.00113 * 10 9 7 12 12 C 1.53001 * 109.47297 * 269.99822 * 11 10 9 13 13 F 1.39896 * 109.46934 * 59.99779 * 12 11 10 14 14 F 1.39898 * 109.47098 * 179.97438 * 12 11 10 15 15 F 1.39905 * 109.46869 * 299.99906 * 12 11 10 16 16 C 1.34781 * 119.99903 * 89.99702 * 10 9 7 17 17 O 1.21280 * 119.99711 * 0.02562 * 16 10 9 18 18 C 1.50706 * 119.99997 * 180.02562 * 16 10 9 19 19 H 1.09000 * 115.54587 * 325.67068 * 18 16 10 20 20 C 1.53068 * 117.51097 * 111.39255 * 18 16 10 21 21 C 1.52995 * 117.49770 * 180.02562 * 18 16 10 22 22 H 1.09001 * 117.50073 * 359.97438 * 21 18 16 23 23 C 1.50696 * 117.49971 * 144.99987 * 21 18 16 24 24 C 1.38248 * 119.97128 * 239.90861 * 23 21 18 25 25 C 1.38196 * 120.02483 * 179.97438 * 24 23 21 26 26 C 1.38458 * 119.97492 * 0.02562 * 25 24 23 27 27 F 1.35104 * 120.02786 * 179.97438 * 26 25 24 28 28 C 1.38465 * 119.94675 * 0.24873 * 26 25 24 29 29 C 1.38196 * 119.97501 * 359.51590 * 28 26 25 30 30 H 0.96998 * 120.00025 * 359.97438 * 1 2 3 31 31 H 1.08997 * 109.47224 * 60.00156 * 9 7 2 32 32 H 1.09005 * 109.47563 * 299.99781 * 9 7 2 33 33 H 1.09005 * 109.47059 * 29.99997 * 11 10 9 34 34 H 1.09006 * 109.47389 * 149.99571 * 11 10 9 35 35 H 1.08996 * 117.49691 * 359.97438 * 20 18 16 36 36 H 1.08997 * 117.51180 * 214.95317 * 20 18 16 37 37 H 1.08002 * 119.98915 * 359.97438 * 24 23 21 38 38 H 1.07996 * 120.01603 * 179.97438 * 25 24 23 39 39 H 1.08007 * 120.01064 * 179.75151 * 28 26 25 40 40 H 1.07993 * 119.98761 * 180.20627 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 2.6790 -4.1695 -1.2681 12 6 1.7483 -5.3007 -1.7099 13 9 0.4528 -4.8001 -1.8771 14 9 2.2026 -5.8320 -2.9217 15 9 1.7384 -6.3039 -0.7348 16 6 2.6410 -4.1249 1.1678 17 8 2.2466 -3.6642 2.2181 18 6 3.6207 -5.2700 1.1678 19 1 3.5049 -5.9876 0.3556 20 6 5.0408 -4.9855 1.6632 21 6 4.0793 -5.8073 2.5249 22 1 3.6727 -5.3323 3.4178 23 6 4.3369 -7.2879 2.6361 24 6 3.6166 -8.0484 3.5384 25 6 3.8516 -9.4064 3.6409 26 6 4.8092 -10.0051 2.8400 27 9 5.0402 -11.3325 2.9397 28 6 5.5340 -9.2414 1.9407 29 6 5.2938 -7.8844 1.8365 30 1 -0.4850 0.8400 0.0004 31 1 0.6248 -2.5571 -0.8897 32 1 0.6240 -2.5568 0.8903 33 1 2.6868 -3.3878 -2.0278 34 1 3.6886 -4.5595 -1.1378 35 1 5.2662 -3.9700 1.9887 36 1 5.8594 -5.5161 1.1770 37 1 2.8700 -7.5811 4.1634 38 1 3.2891 -10.0002 4.3461 39 1 6.2840 -9.7067 1.3183 40 1 5.8567 -7.2892 1.1328 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096444430.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:24 Heat of formation + Delta-G solvation = -183.280308 kcal Electronic energy + Delta-G solvation = -30452.458734 eV Core-core repulsion = 25539.532911 eV Total energy + Delta-G solvation = -4912.925823 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.109 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.87586 -49.07183 -47.44123 -47.30312 -40.18253 -38.97883 -36.35659 -35.25371 -32.81247 -31.37506 -30.38192 -29.36008 -27.40274 -24.57199 -23.97511 -23.32451 -23.00968 -22.06121 -20.63110 -18.94670 -18.33606 -18.20397 -18.01181 -17.66306 -16.81647 -16.38609 -16.16310 -15.79271 -15.70578 -15.44821 -14.85980 -14.53380 -14.31094 -14.19101 -14.05106 -13.80662 -13.78709 -13.73366 -13.49707 -13.47229 -13.21431 -12.90732 -12.74435 -12.44806 -12.24708 -12.01651 -11.94559 -11.65337 -11.34198 -11.17319 -11.02955 -10.76115 -10.60718 -10.45746 -10.27359 -9.81438 -9.33691 -9.23098 -8.59373 -8.52923 -8.08323 -6.14188 -4.20309 0.88360 1.01750 2.69776 3.08380 3.23384 3.24644 3.31882 3.35879 3.48521 3.93105 4.04501 4.12676 4.21405 4.28208 4.36185 4.50085 4.58752 4.65277 4.76711 4.83773 4.97272 5.04052 5.14174 5.20430 5.25505 5.27484 5.51791 5.54242 5.71634 5.78808 5.90630 5.94731 5.95478 6.11243 6.39656 6.67093 6.80354 7.21706 7.31728 7.80100 8.02215 8.08471 8.68661 8.85547 9.45164 10.94171 Molecular weight = 345.11amu Principal moments of inertia in cm(-1) A = 0.014186 B = 0.003138 C = 0.002783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1973.239197 B = 8920.036221 C =10058.446810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.063 3.937 3 Si 0.900 3.100 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.533 4.533 8 H 0.060 0.940 9 C 0.242 3.758 10 N -0.591 5.591 11 C 0.075 3.925 12 C 0.426 3.574 13 F -0.174 7.174 14 F -0.188 7.188 15 F -0.185 7.185 16 C 0.542 3.458 17 O -0.520 6.520 18 C -0.183 4.183 19 H 0.126 0.874 20 C -0.145 4.145 21 C -0.088 4.088 22 H 0.130 0.870 23 C -0.054 4.054 24 C -0.080 4.080 25 C -0.150 4.150 26 C 0.088 3.912 27 F -0.143 7.143 28 C -0.150 4.150 29 C -0.092 4.092 30 H 0.265 0.735 31 H 0.041 0.959 32 H 0.049 0.951 33 H 0.129 0.871 34 H 0.113 0.887 35 H 0.109 0.891 36 H 0.106 0.894 37 H 0.136 0.864 38 H 0.135 0.865 39 H 0.135 0.865 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.552 -16.604 0.083 19.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.140 4.140 3 Si 0.727 3.273 4 H -0.206 1.206 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.572 4.572 8 H 0.078 0.922 9 C 0.124 3.876 10 N -0.322 5.322 11 C -0.053 4.053 12 C 0.370 3.630 13 F -0.156 7.156 14 F -0.170 7.170 15 F -0.167 7.167 16 C 0.329 3.671 17 O -0.395 6.395 18 C -0.205 4.205 19 H 0.144 0.856 20 C -0.182 4.182 21 C -0.106 4.106 22 H 0.148 0.852 23 C -0.055 4.055 24 C -0.098 4.098 25 C -0.169 4.169 26 C 0.069 3.931 27 F -0.122 7.122 28 C -0.169 4.169 29 C -0.110 4.110 30 H 0.075 0.925 31 H 0.059 0.941 32 H 0.067 0.933 33 H 0.147 0.853 34 H 0.131 0.869 35 H 0.127 0.873 36 H 0.124 0.876 37 H 0.154 0.846 38 H 0.153 0.847 39 H 0.152 0.848 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 10.123 -16.264 0.672 19.169 hybrid contribution 0.193 0.401 -0.302 0.537 sum 10.316 -15.863 0.370 18.926 Atomic orbital electron populations 1.69930 1.06030 1.27257 1.49654 1.24936 0.94886 0.99295 0.94841 0.86470 0.79808 0.82921 0.78060 1.20562 1.21047 1.19847 1.21368 0.93369 0.90398 1.52074 0.92211 1.19520 0.87127 0.81561 0.99353 1.48102 1.46445 1.35236 1.02465 1.22612 0.96201 0.94825 0.91647 1.21742 0.82142 0.84413 0.74683 1.93222 1.40114 1.87014 1.95212 1.93157 1.88932 1.88026 1.46853 1.93135 1.96471 1.64095 1.62956 1.19425 0.81265 0.82450 0.83927 1.90690 1.57325 1.60913 1.30570 1.22690 0.97390 1.00707 0.99673 0.85624 1.23162 0.90997 1.02063 1.02004 1.21042 1.03410 0.90543 0.95607 0.85207 1.19245 0.96052 0.93873 0.96287 1.20919 0.98546 0.92491 0.97812 1.21139 0.99039 0.95839 1.00877 1.17739 0.98595 0.77626 0.99131 1.91491 1.93824 1.31475 1.95407 1.21100 1.01444 0.94458 0.99896 1.20952 0.97451 0.93714 0.98886 0.92527 0.94111 0.93297 0.85252 0.86907 0.87296 0.87599 0.84596 0.84694 0.84758 0.84752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.62 13.29 55.43 0.74 -24.88 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 3 Si 0.90 20.95 29.54 -169.99 -5.02 15.93 16 4 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.53 -14.22 9.39 -34.44 -0.32 -14.55 16 8 H 0.06 1.56 7.81 -52.48 -0.41 1.15 16 9 C 0.24 5.99 4.95 -5.20 -0.03 5.96 16 10 N -0.59 -11.55 2.37 -175.05 -0.42 -11.97 16 11 C 0.08 1.09 5.22 -4.04 -0.02 1.07 16 12 C 0.43 6.27 3.29 37.16 0.12 6.40 16 13 F -0.17 -3.04 16.22 2.25 0.04 -3.01 16 14 F -0.19 -2.49 17.32 2.25 0.04 -2.45 16 15 F -0.18 -2.78 14.56 2.25 0.03 -2.74 16 16 C 0.54 10.43 7.12 -10.98 -0.08 10.36 16 17 O -0.52 -12.17 15.84 5.56 0.09 -12.08 16 18 C -0.18 -2.53 4.08 -91.74 -0.37 -2.91 16 19 H 0.13 1.56 5.31 -51.93 -0.28 1.29 16 20 C -0.15 -1.62 9.57 -26.67 -0.26 -1.87 16 21 C -0.09 -1.09 5.55 -91.75 -0.51 -1.59 16 22 H 0.13 1.79 7.67 -51.93 -0.40 1.39 16 23 C -0.05 -0.59 5.61 -104.62 -0.59 -1.18 16 24 C -0.08 -0.83 9.73 -39.59 -0.39 -1.22 16 25 C -0.15 -1.49 10.03 -39.52 -0.40 -1.89 16 26 C 0.09 0.92 7.30 -39.42 -0.29 0.64 16 27 F -0.14 -1.58 17.27 2.25 0.04 -1.54 16 28 C -0.15 -1.41 10.03 -39.51 -0.40 -1.80 16 29 C -0.09 -0.87 9.29 -39.59 -0.37 -1.24 16 30 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 31 H 0.04 1.03 7.25 -51.93 -0.38 0.65 16 32 H 0.05 1.38 7.42 -51.93 -0.39 1.00 16 33 H 0.13 1.81 8.07 -51.93 -0.42 1.39 16 34 H 0.11 1.24 6.64 -51.93 -0.34 0.90 16 35 H 0.11 1.33 8.14 -51.93 -0.42 0.91 16 36 H 0.11 0.86 6.18 -51.93 -0.32 0.54 16 37 H 0.14 1.28 8.06 -52.49 -0.42 0.86 16 38 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 39 H 0.13 0.99 8.06 -52.48 -0.42 0.57 16 40 H 0.13 1.00 6.02 -52.49 -0.32 0.68 16 LS Contribution 357.36 15.07 5.39 5.39 Total: -1.00 -31.64 357.36 -7.14 -38.78 By element: Atomic # 1 Polarization: 4.85 SS G_CDS: -4.07 Total: 0.78 kcal Atomic # 6 Polarization: 1.79 SS G_CDS: -3.98 Total: -2.19 kcal Atomic # 7 Polarization: -37.17 SS G_CDS: 0.32 Total: -36.85 kcal Atomic # 8 Polarization: -12.17 SS G_CDS: 0.09 Total: -12.08 kcal Atomic # 9 Polarization: -9.89 SS G_CDS: 0.15 Total: -9.74 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.64 -7.14 -38.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096444430.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -144.504 kcal (2) G-P(sol) polarization free energy of solvation -31.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds