Wall clock time and date at job start Tue Mar 31 2020 06:32:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48499 * 109.47094 * 269.99976 * 3 2 1 5 5 H 1.48505 * 109.47195 * 29.99857 * 3 2 1 6 6 H 1.48493 * 109.47449 * 149.99822 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.46992 * 179.97438 * 9 7 2 11 11 C 1.46502 * 119.99658 * 90.00121 * 10 9 7 12 12 C 1.52998 * 109.47482 * 90.00117 * 11 10 9 13 13 F 1.39904 * 109.47161 * 59.99722 * 12 11 10 14 14 F 1.39902 * 109.47423 * 179.97438 * 12 11 10 15 15 F 1.39905 * 109.46867 * 300.00151 * 12 11 10 16 16 C 1.34775 * 120.00337 * 269.99986 * 10 9 7 17 17 O 1.21285 * 119.99996 * 359.97438 * 16 10 9 18 18 C 1.50698 * 120.00318 * 180.02562 * 16 10 9 19 19 H 1.09005 * 115.54912 * 34.27158 * 18 16 10 20 20 C 1.53001 * 117.49848 * 248.60899 * 18 16 10 21 21 C 1.52997 * 117.50265 * 179.97438 * 18 16 10 22 22 H 1.08998 * 117.50233 * 214.97721 * 21 18 16 23 23 C 1.50707 * 117.49546 * 359.97438 * 21 18 16 24 24 C 1.38237 * 119.97266 * 59.72842 * 23 21 18 25 25 C 1.38200 * 120.02430 * 179.72141 * 24 23 21 26 26 C 1.38455 * 119.97350 * 0.52941 * 25 24 23 27 27 F 1.35099 * 120.02823 * 179.72169 * 26 25 24 28 28 C 1.38458 * 119.95047 * 359.74537 * 26 25 24 29 29 C 1.38201 * 119.97087 * 0.02562 * 28 26 25 30 30 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 31 31 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 32 32 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 33 33 H 1.08998 * 109.46888 * 209.99779 * 11 10 9 34 34 H 1.08994 * 109.47490 * 329.99842 * 11 10 9 35 35 H 1.09003 * 117.49719 * 359.97438 * 20 18 16 36 36 H 1.08995 * 117.50307 * 144.99565 * 20 18 16 37 37 H 1.08004 * 119.99164 * 359.97438 * 24 23 21 38 38 H 1.08000 * 120.01391 * 180.24859 * 25 24 23 39 39 H 1.08000 * 120.02052 * 179.97438 * 28 26 25 40 40 H 1.08004 * 119.98912 * 179.97438 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 2.6788 -4.1694 1.2693 12 6 1.7482 -5.3006 1.7110 13 9 1.7382 -6.3039 0.7361 14 9 2.2030 -5.8326 2.9224 15 9 0.4525 -4.8000 1.8782 16 6 2.6408 -4.1250 -1.1666 17 8 2.2465 -3.6644 -2.2170 18 6 3.6197 -5.2708 -1.1666 19 1 3.5038 -5.9880 -0.3540 20 6 5.0394 -4.9871 -1.6613 21 6 4.0783 -5.8082 -2.5237 22 1 4.2643 -6.8792 -2.6042 23 6 3.5162 -5.1515 -3.7582 24 6 3.7235 -3.8025 -3.9781 25 6 3.2133 -3.2004 -5.1126 26 6 2.4851 -3.9465 -6.0237 27 9 1.9812 -3.3578 -7.1304 28 6 2.2733 -5.2963 -5.7996 29 6 2.7884 -5.8972 -4.6667 30 1 -0.4850 0.8401 0.0004 31 1 0.6239 -2.5567 0.8903 32 1 0.6246 -2.5571 -0.8897 33 1 3.6883 -4.5595 1.1390 34 1 2.6866 -3.3878 2.0289 35 1 5.2653 -3.9717 -1.9872 36 1 5.8575 -5.5177 -1.1744 37 1 4.2877 -3.2197 -3.2650 38 1 3.3788 -2.1474 -5.2862 39 1 1.7051 -5.8792 -6.5093 40 1 2.6230 -6.9500 -4.4913 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096444432.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:34 Heat of formation + Delta-G solvation = -170.882152 kcal Electronic energy + Delta-G solvation = -31315.933210 eV Core-core repulsion = 26403.545012 eV Total energy + Delta-G solvation = -4912.388199 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.109 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.88427 -48.58859 -47.45044 -47.31093 -40.28847 -38.39962 -36.22313 -35.20274 -32.80831 -30.83323 -29.95799 -29.36809 -27.36446 -24.49494 -23.69791 -23.31635 -22.62967 -22.03898 -20.45492 -18.91526 -18.33788 -18.19551 -17.83160 -17.29491 -16.78180 -16.20128 -15.82084 -15.71483 -15.27881 -14.91487 -14.82987 -14.42206 -14.24683 -14.19767 -14.01203 -13.81184 -13.71843 -13.49597 -13.45540 -13.29093 -12.89726 -12.84658 -12.49041 -12.37774 -12.27526 -11.94201 -11.81700 -11.37075 -11.33588 -11.02022 -10.78225 -10.68299 -10.44720 -10.40286 -10.26923 -9.80772 -9.29999 -8.61067 -8.52868 -8.04683 -7.87200 -6.14016 -4.20174 1.41285 1.62730 2.72259 3.10704 3.24663 3.30888 3.31801 3.42739 3.75812 4.03077 4.17519 4.21548 4.34954 4.36537 4.58907 4.63424 4.81472 4.87902 5.00106 5.06323 5.17873 5.18842 5.21165 5.30687 5.49998 5.52607 5.64149 5.68697 5.82633 6.01815 6.19680 6.31185 6.44063 6.58756 6.80898 6.83834 7.22188 7.24224 7.32831 7.80000 8.04619 8.08939 8.71963 8.86741 9.45323 10.94248 Molecular weight = 345.11amu Principal moments of inertia in cm(-1) A = 0.007718 B = 0.005304 C = 0.003582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3626.867078 B = 5278.040376 C = 7814.047166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.064 3.936 3 Si 0.898 3.102 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.532 4.532 8 H 0.059 0.941 9 C 0.244 3.756 10 N -0.592 5.592 11 C 0.075 3.925 12 C 0.427 3.573 13 F -0.186 7.186 14 F -0.188 7.188 15 F -0.174 7.174 16 C 0.536 3.464 17 O -0.502 6.502 18 C -0.190 4.190 19 H 0.127 0.873 20 C -0.150 4.150 21 C -0.081 4.081 22 H 0.120 0.880 23 C -0.057 4.057 24 C -0.016 4.016 25 C -0.156 4.156 26 C 0.094 3.906 27 F -0.148 7.148 28 C -0.167 4.167 29 C -0.085 4.085 30 H 0.265 0.735 31 H 0.039 0.961 32 H 0.049 0.951 33 H 0.113 0.887 34 H 0.128 0.872 35 H 0.105 0.895 36 H 0.108 0.892 37 H 0.124 0.876 38 H 0.129 0.871 39 H 0.127 0.873 40 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.698 -13.488 -1.328 16.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.139 4.139 3 Si 0.725 3.275 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.571 4.571 8 H 0.077 0.923 9 C 0.126 3.874 10 N -0.323 5.323 11 C -0.053 4.053 12 C 0.371 3.629 13 F -0.167 7.167 14 F -0.170 7.170 15 F -0.156 7.156 16 C 0.323 3.677 17 O -0.377 6.377 18 C -0.211 4.211 19 H 0.145 0.855 20 C -0.187 4.187 21 C -0.100 4.100 22 H 0.138 0.862 23 C -0.057 4.057 24 C -0.034 4.034 25 C -0.175 4.175 26 C 0.075 3.925 27 F -0.127 7.127 28 C -0.186 4.186 29 C -0.103 4.103 30 H 0.075 0.925 31 H 0.057 0.943 32 H 0.067 0.933 33 H 0.131 0.869 34 H 0.146 0.854 35 H 0.123 0.877 36 H 0.126 0.874 37 H 0.142 0.858 38 H 0.147 0.853 39 H 0.145 0.855 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 9.237 -13.070 -1.947 16.123 hybrid contribution -0.090 0.859 0.241 0.897 sum 9.146 -12.211 -1.706 15.352 Atomic orbital electron populations 1.69930 1.06019 1.27213 1.49614 1.24924 0.94853 0.99225 0.94872 0.86507 0.79642 0.83056 0.78258 1.20538 1.21082 1.19881 1.21344 0.93266 0.90390 1.52093 0.92313 1.19489 0.87128 0.81551 0.99280 1.48190 1.46414 1.35237 1.02462 1.22599 0.96165 0.94783 0.91765 1.21756 0.82150 0.84399 0.74632 1.93124 1.96478 1.64129 1.63014 1.93157 1.88912 1.88003 1.46943 1.93225 1.40127 1.87013 1.95211 1.19531 0.81591 0.82609 0.83940 1.90756 1.56624 1.60830 1.29477 1.22660 0.97389 1.01196 0.99895 0.85532 1.23151 0.91210 1.02256 1.02120 1.20984 1.01842 0.98852 0.88291 0.86208 1.18855 0.98881 0.93717 0.94260 1.20622 0.95673 0.93480 0.93630 1.20974 1.01011 1.00369 0.95187 1.17677 0.98342 0.91697 0.84770 1.91453 1.85674 1.84514 1.51038 1.20868 1.04358 0.93301 1.00059 1.20584 0.96964 0.99592 0.93209 0.92547 0.94271 0.93317 0.86943 0.85377 0.87671 0.87402 0.85778 0.85331 0.85520 0.85781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.66 13.29 55.43 0.74 -24.93 16 2 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 3 Si 0.90 20.98 29.54 -169.99 -5.02 15.96 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 7 C -0.53 -14.05 9.39 -34.44 -0.32 -14.37 16 8 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 9 C 0.24 5.96 4.96 -5.19 -0.03 5.94 16 10 N -0.59 -11.32 2.37 -175.06 -0.42 -11.74 16 11 C 0.07 1.07 5.22 -4.04 -0.02 1.05 16 12 C 0.43 6.17 3.29 37.16 0.12 6.29 16 13 F -0.19 -2.70 14.56 2.25 0.03 -2.67 16 14 F -0.19 -2.45 17.32 2.25 0.04 -2.41 16 15 F -0.17 -3.03 16.23 2.25 0.04 -3.00 16 16 C 0.54 9.94 6.97 -10.99 -0.08 9.86 16 17 O -0.50 -11.05 11.26 5.55 0.06 -10.98 16 18 C -0.19 -2.53 4.45 -91.77 -0.41 -2.94 16 19 H 0.13 1.46 5.31 -51.93 -0.28 1.19 16 20 C -0.15 -1.61 9.58 -26.72 -0.26 -1.87 16 21 C -0.08 -0.97 6.04 -91.76 -0.55 -1.53 16 22 H 0.12 1.11 8.14 -51.93 -0.42 0.68 16 23 C -0.06 -0.83 4.38 -104.62 -0.46 -1.29 16 24 C -0.02 -0.26 6.15 -39.60 -0.24 -0.50 16 25 C -0.16 -2.60 10.03 -39.52 -0.40 -3.00 16 26 C 0.09 1.54 7.30 -39.42 -0.29 1.25 16 27 F -0.15 -2.45 17.27 2.25 0.04 -2.41 16 28 C -0.17 -2.41 10.03 -39.51 -0.40 -2.80 16 29 C -0.09 -1.17 9.73 -39.59 -0.39 -1.55 16 30 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 31 H 0.04 0.99 7.26 -51.93 -0.38 0.61 16 32 H 0.05 1.38 7.42 -51.93 -0.39 0.99 16 33 H 0.11 1.21 6.64 -51.93 -0.34 0.87 16 34 H 0.13 1.79 8.07 -51.93 -0.42 1.37 16 35 H 0.11 1.24 6.18 -51.93 -0.32 0.92 16 36 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.12 1.99 5.76 -52.48 -0.30 1.69 16 38 H 0.13 2.03 8.06 -52.49 -0.42 1.60 16 39 H 0.13 1.53 8.06 -52.49 -0.42 1.11 16 40 H 0.12 1.35 8.06 -52.48 -0.42 0.93 16 LS Contribution 349.34 15.07 5.26 5.26 Total: -1.00 -31.38 349.34 -7.12 -38.50 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: -4.08 Total: 2.21 kcal Atomic # 6 Polarization: 0.01 SS G_CDS: -3.81 Total: -3.80 kcal Atomic # 7 Polarization: -36.99 SS G_CDS: 0.32 Total: -36.67 kcal Atomic # 8 Polarization: -11.05 SS G_CDS: 0.06 Total: -10.98 kcal Atomic # 9 Polarization: -10.63 SS G_CDS: 0.15 Total: -10.48 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.38 -7.12 -38.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096444432.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.384 kcal (2) G-P(sol) polarization free energy of solvation -31.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds