Wall clock time and date at job start Tue Mar 31 2020 06:11:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86798 * 119.99821 * 2 1 4 4 H 1.48497 * 109.47383 * 273.62114 * 3 2 1 5 5 H 1.48506 * 109.47412 * 33.61987 * 3 2 1 6 6 H 1.48503 * 109.47257 * 153.61971 * 3 2 1 7 7 C 1.39930 * 120.00340 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00107 * 342.25767 * 7 2 1 9 9 C 1.41440 * 120.00225 * 162.25737 * 7 2 1 10 10 C 1.40791 * 120.17746 * 331.82527 * 9 7 2 11 11 C 1.37707 * 120.04370 * 180.02562 * 10 9 7 12 12 C 1.38360 * 120.41836 * 359.96925 * 11 10 9 13 13 C 1.39902 * 120.35510 * 0.02562 * 12 11 10 14 14 C 1.47845 * 120.02659 * 179.97438 * 13 12 11 15 15 O 1.21556 * 119.99858 * 180.02562 * 14 13 12 16 16 N 1.34774 * 120.00305 * 0.04610 * 14 13 12 17 17 C 1.39329 * 120.00031 * 184.51773 * 16 14 13 18 18 C 1.39236 * 119.90708 * 145.22847 * 17 16 14 19 19 C 1.37579 * 120.11425 * 180.02562 * 18 17 16 20 20 C 1.39864 * 119.93199 * 359.97438 * 19 18 17 21 21 C 1.47378 * 120.08809 * 179.97438 * 20 19 18 22 22 O 1.21517 * 119.99957 * 180.02562 * 21 20 19 23 23 O 1.34762 * 119.99847 * 359.97438 * 21 20 19 24 24 C 1.39939 * 119.82616 * 0.02562 * 20 19 18 25 25 Cl 1.73594 * 120.05904 * 180.02562 * 24 20 19 26 26 C 1.37834 * 119.88127 * 359.72598 * 24 20 19 27 27 C 1.39051 * 119.94432 * 0.02562 * 13 12 11 28 28 H 0.96999 * 120.00275 * 359.97438 * 1 2 3 29 29 H 1.07997 * 119.97279 * 0.02562 * 10 9 7 30 30 H 1.08004 * 119.79214 * 179.97438 * 11 10 9 31 31 H 1.08000 * 119.82603 * 180.02562 * 12 11 10 32 32 H 0.97001 * 119.99532 * 4.52262 * 16 14 13 33 33 H 1.07996 * 119.94507 * 0.02562 * 18 17 16 34 34 H 1.07997 * 120.03154 * 180.02562 * 19 18 17 35 35 H 0.96697 * 116.99993 * 180.02562 * 23 21 20 36 36 H 1.07998 * 119.96589 * 180.29321 * 26 24 20 37 37 H 1.08003 * 120.20162 * 180.24787 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.4132 2.0907 -1.3972 5 1 1.4800 2.6294 0.7752 6 1 3.5760 1.4194 0.6221 7 6 2.0080 -1.2118 -0.0005 8 1 1.5066 -2.1250 0.2841 9 6 3.3720 -1.2407 -0.3738 10 6 3.8807 -0.2823 -1.2710 11 6 5.2090 -0.3134 -1.6330 12 6 6.0524 -1.2827 -1.1197 13 6 5.5651 -2.2432 -0.2269 14 6 6.4727 -3.2760 0.3167 15 8 6.0486 -4.1106 1.0921 16 7 7.7703 -3.2918 -0.0470 17 6 8.6038 -4.3191 0.3901 18 6 9.6179 -4.7908 -0.4393 19 6 10.4430 -5.8055 -0.0122 20 6 10.2632 -6.3635 1.2577 21 6 11.1448 -7.4509 1.7185 22 8 10.9868 -7.9349 2.8218 23 8 12.1255 -7.9092 0.9158 24 6 9.2432 -5.8874 2.0891 25 17 9.0149 -6.5752 3.6665 26 6 8.4240 -4.8671 1.6556 27 6 4.2261 -2.2264 0.1480 28 1 -0.4850 0.8400 0.0004 29 1 3.2287 0.4776 -1.6755 30 1 5.5948 0.4235 -2.3218 31 1 7.0926 -1.2978 -1.4097 32 1 8.1239 -2.5879 -0.6131 33 1 9.7569 -4.3596 -1.4196 34 1 11.2294 -6.1700 -0.6564 35 1 12.6779 -8.6236 1.2615 36 1 7.6394 -4.4954 2.2980 37 1 3.8464 -2.9635 0.8400 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097016182.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:15 Heat of formation + Delta-G solvation = -75.340894 kcal Electronic energy + Delta-G solvation = -25676.943634 eV Core-core repulsion = 21603.058436 eV Total energy + Delta-G solvation = -4073.885198 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.060 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.93379 -40.20514 -38.63627 -37.47057 -36.65342 -36.17067 -34.84955 -33.82954 -31.41295 -31.07338 -30.34551 -29.77599 -25.62711 -24.87614 -23.50717 -22.94702 -21.52719 -20.84383 -20.32708 -18.68244 -18.16178 -17.81303 -17.32632 -16.54593 -15.92632 -15.88994 -15.54149 -15.17795 -14.82909 -14.77424 -14.41460 -13.98007 -13.83845 -13.68525 -13.49999 -12.97235 -12.91314 -12.84626 -12.21483 -12.07390 -11.79448 -11.76848 -11.69388 -11.52761 -11.20257 -10.94932 -10.69483 -10.49262 -10.20568 -10.10729 -9.86968 -9.66759 -9.32610 -9.07441 -8.52776 -8.04080 -7.93585 -7.13394 -4.68837 0.26502 0.93062 1.63154 1.92468 2.28997 2.37656 2.72672 2.95369 2.99430 3.09075 3.13151 3.23720 3.48197 3.81280 4.31696 4.39766 4.67342 4.80465 4.92334 4.99137 5.11715 5.18598 5.51041 5.65691 5.71523 5.82546 5.84648 5.92803 6.06496 6.21161 6.22793 6.48709 6.50349 6.59545 6.80812 7.01660 7.20295 7.31773 7.37528 7.60660 7.65949 7.78720 8.14282 8.22526 8.37764 8.56922 9.88136 Molecular weight = 345.06amu Principal moments of inertia in cm(-1) A = 0.024617 B = 0.002266 C = 0.002133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.174092 B =12354.953922 C =13125.326338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.081 3.919 3 Si 0.915 3.085 4 H -0.268 1.268 5 H -0.289 1.289 6 H -0.244 1.244 7 C -0.436 4.436 8 H 0.095 0.905 9 C 0.081 3.919 10 C -0.223 4.223 11 C -0.079 4.079 12 C -0.221 4.221 13 C -0.110 4.110 14 C 0.565 3.435 15 O -0.517 6.517 16 N -0.674 5.674 17 C 0.214 3.786 18 C -0.166 4.166 19 C -0.026 4.026 20 C -0.156 4.156 21 C 0.524 3.476 22 O -0.496 6.496 23 O -0.515 6.515 24 C 0.043 3.957 25 Cl -0.028 7.028 26 C -0.135 4.135 27 C -0.132 4.132 28 H 0.289 0.711 29 H 0.106 0.894 30 H 0.101 0.899 31 H 0.096 0.904 32 H 0.418 0.582 33 H 0.142 0.858 34 H 0.149 0.851 35 H 0.413 0.587 36 H 0.163 0.837 37 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.600 -6.516 -1.821 21.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.139 4.139 3 Si 0.741 3.259 4 H -0.195 1.195 5 H -0.216 1.216 6 H -0.167 1.167 7 C -0.463 4.463 8 H 0.113 0.887 9 C 0.077 3.923 10 C -0.243 4.243 11 C -0.097 4.097 12 C -0.241 4.241 13 C -0.113 4.113 14 C 0.358 3.642 15 O -0.393 6.393 16 N -0.319 5.319 17 C 0.116 3.884 18 C -0.186 4.186 19 C -0.045 4.045 20 C -0.159 4.159 21 C 0.368 3.632 22 O -0.385 6.385 23 O -0.328 6.328 24 C 0.015 3.985 25 Cl 0.002 6.998 26 C -0.156 4.156 27 C -0.152 4.152 28 H 0.099 0.901 29 H 0.123 0.877 30 H 0.119 0.881 31 H 0.114 0.886 32 H 0.257 0.743 33 H 0.160 0.840 34 H 0.167 0.833 35 H 0.272 0.728 36 H 0.180 0.820 37 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 19.583 -6.849 -0.963 20.768 hybrid contribution 0.670 0.624 -0.086 0.919 sum 20.252 -6.226 -1.049 21.213 Atomic orbital electron populations 1.69677 1.08140 1.30668 1.33498 1.26224 0.94830 1.01939 0.90928 0.86273 0.81163 0.79485 0.78943 1.19467 1.21638 1.16677 1.19574 0.92683 0.96348 1.37724 0.88688 1.17690 0.93191 0.91075 0.90306 1.21219 0.95722 1.03833 1.03486 1.20495 0.93698 0.97097 0.98395 1.20332 0.98031 1.00161 1.05569 1.19214 0.94054 0.96420 1.01645 1.19086 0.80619 0.84685 0.79819 1.90737 1.75773 1.39138 1.33668 1.43640 1.09649 1.26067 1.52547 1.17918 0.90157 0.89058 0.91284 1.21018 0.97927 0.99466 1.00234 1.21147 0.97202 0.92950 0.93240 1.18706 0.99369 1.00907 0.96928 1.20591 0.78733 0.81567 0.82318 1.90994 1.69474 1.57139 1.20843 1.84539 1.44274 1.54438 1.49527 1.20809 0.94527 0.94865 0.88276 1.98424 1.95974 1.83054 1.22368 1.21250 1.01058 0.97577 0.95755 1.21257 0.90875 1.01611 1.01426 0.90080 0.87684 0.88076 0.88563 0.74335 0.84022 0.83300 0.72802 0.82003 0.86453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.17 13.93 55.55 0.77 -19.39 16 2 C 0.08 2.01 5.42 -17.35 -0.09 1.91 16 3 Si 0.91 19.39 24.46 -169.99 -4.16 15.23 16 4 H -0.27 -5.44 6.61 56.52 0.37 -5.07 16 5 H -0.29 -5.95 7.11 56.52 0.40 -5.55 16 6 H -0.24 -5.26 6.86 56.52 0.39 -4.87 16 7 C -0.44 -11.15 9.58 -37.73 -0.36 -11.51 16 8 H 0.10 2.56 8.06 -52.49 -0.42 2.14 16 9 C 0.08 1.91 5.15 -106.87 -0.55 1.36 16 10 C -0.22 -4.87 7.17 -38.81 -0.28 -5.14 16 11 C -0.08 -1.47 10.01 -39.73 -0.40 -1.87 16 12 C -0.22 -3.81 9.55 -38.91 -0.37 -4.18 16 13 C -0.11 -2.12 5.87 -105.04 -0.62 -2.74 16 14 C 0.57 9.83 7.61 -12.33 -0.09 9.73 16 15 O -0.52 -10.36 13.74 5.32 0.07 -10.29 16 16 N -0.67 -8.71 5.26 -10.72 -0.06 -8.77 16 17 C 0.21 2.64 6.30 -83.77 -0.53 2.11 16 18 C -0.17 -1.53 9.94 -39.45 -0.39 -1.93 16 19 C -0.03 -0.24 9.60 -39.21 -0.38 -0.61 16 20 C -0.16 -1.79 5.88 -104.93 -0.62 -2.41 16 21 C 0.52 5.77 8.25 34.45 0.28 6.05 16 22 O -0.50 -6.75 14.74 -19.28 -0.28 -7.04 16 23 O -0.52 -3.75 12.67 -40.66 -0.52 -4.27 16 24 C 0.04 0.58 6.35 -39.09 -0.25 0.33 16 25 Cl -0.03 -0.39 26.01 -51.86 -1.35 -1.74 16 26 C -0.14 -1.90 8.44 -39.42 -0.33 -2.23 16 27 C -0.13 -2.93 9.34 -38.44 -0.36 -3.29 16 28 H 0.29 6.57 8.30 -40.82 -0.34 6.23 16 29 H 0.11 2.28 4.40 -52.49 -0.23 2.05 16 30 H 0.10 1.58 8.06 -52.48 -0.42 1.16 16 31 H 0.10 1.25 6.39 -52.49 -0.34 0.92 16 32 H 0.42 4.17 6.85 -40.82 -0.28 3.89 16 33 H 0.14 0.91 8.06 -52.49 -0.42 0.48 16 34 H 0.15 0.95 7.60 -52.49 -0.40 0.55 16 35 H 0.41 1.20 9.11 45.56 0.42 1.62 16 36 H 0.16 2.57 6.20 -52.49 -0.33 2.25 16 37 H 0.12 2.67 7.64 -52.48 -0.40 2.26 16 LS Contribution 336.48 15.07 5.07 5.07 Total: -1.00 -29.74 336.48 -7.78 -37.52 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: -2.00 Total: 8.07 kcal Atomic # 6 Polarization: -9.07 SS G_CDS: -5.33 Total: -14.40 kcal Atomic # 7 Polarization: -28.88 SS G_CDS: 0.72 Total: -28.16 kcal Atomic # 8 Polarization: -20.86 SS G_CDS: -0.73 Total: -21.59 kcal Atomic # 14 Polarization: 19.39 SS G_CDS: -4.16 Total: 15.23 kcal Atomic # 17 Polarization: -0.39 SS G_CDS: -1.35 Total: -1.74 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -29.74 -7.78 -37.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097016182.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.822 kcal (2) G-P(sol) polarization free energy of solvation -29.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds