Wall clock time and date at job start Tue Mar 31 2020 06:43:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.30913 * 125.08767 * 2 1 4 4 N 1.37486 * 116.31687 * 179.85002 * 3 2 1 5 5 C 1.35145 * 113.93536 * 0.43969 * 4 3 2 6 6 N 1.32357 * 108.82187 * 179.77322 * 5 4 3 7 7 C 1.33871 * 109.14023 * 359.97438 * 6 5 4 8 8 C 1.50700 * 125.80908 * 179.97438 * 7 6 5 9 9 C 1.34338 * 108.38493 * 0.02562 * 7 6 5 10 10 C 1.50698 * 126.43847 * 180.02562 * 9 7 6 11 11 N 1.46894 * 109.47643 * 269.97666 * 10 9 7 12 12 C 1.46896 * 111.00290 * 190.00252 * 11 10 9 13 13 C 1.50693 * 109.47441 * 75.52570 * 12 11 10 14 14 H 1.08004 * 120.00264 * 4.79022 * 13 12 11 15 15 C 1.37881 * 120.00077 * 184.79078 * 13 12 11 16 16 N 1.31516 * 120.00099 * 179.97438 * 15 13 12 17 17 Si 1.86794 * 120.00167 * 0.02562 * 15 13 12 18 18 H 1.48499 * 109.47520 * 89.99490 * 17 15 13 19 19 H 1.48501 * 109.47590 * 210.00019 * 17 15 13 20 20 H 1.48507 * 109.47057 * 329.99658 * 17 15 13 21 21 C 1.46899 * 111.00361 * 66.04154 * 11 10 9 22 22 C 1.50696 * 109.47407 * 190.34682 * 21 11 10 23 23 C 1.34508 * 125.79366 * 90.00087 * 22 21 11 24 24 C 1.41379 * 106.84441 * 180.02562 * 23 22 21 25 25 C 1.34518 * 106.83774 * 359.97438 * 24 23 22 26 26 O 1.34296 * 108.41975 * 359.73982 * 25 24 23 27 27 S 1.75779 * 125.09177 * 180.30742 * 2 1 3 28 28 H 1.09003 * 109.47418 * 179.71964 * 1 2 3 29 29 H 1.09000 * 109.47150 * 59.71955 * 1 2 3 30 30 H 1.09001 * 109.47147 * 299.71834 * 1 2 3 31 31 H 1.07998 * 121.84227 * 0.04337 * 3 2 1 32 32 H 1.09000 * 109.47179 * 270.00016 * 8 7 6 33 33 H 1.08993 * 109.47101 * 30.00009 * 8 7 6 34 34 H 1.08998 * 109.47216 * 150.00486 * 8 7 6 35 35 H 1.09008 * 109.47154 * 29.97889 * 10 9 7 36 36 H 1.09005 * 109.47391 * 149.97305 * 10 9 7 37 37 H 1.09001 * 109.47083 * 195.52401 * 12 11 10 38 38 H 1.09002 * 109.47279 * 315.52266 * 12 11 10 39 39 H 0.97000 * 120.00155 * 180.02562 * 16 15 13 40 40 H 1.09002 * 109.47137 * 310.34996 * 21 11 10 41 41 H 1.09006 * 109.46725 * 70.33996 * 21 11 10 42 42 H 1.08008 * 126.57949 * 0.03701 * 23 22 21 43 43 H 1.08002 * 126.58092 * 179.97438 * 24 23 22 44 44 H 1.08002 * 125.78268 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2595 1.0712 0.0000 4 7 3.6183 0.8616 0.0032 5 6 3.9719 -0.4428 -0.0035 6 7 5.2928 -0.5272 -0.0046 7 6 5.8115 0.7069 0.0008 8 6 7.2797 1.0463 0.0021 9 6 4.8004 1.5915 0.0059 10 6 4.9250 3.0933 0.0125 11 7 4.9666 3.5753 1.3994 12 6 4.8491 5.0386 1.4521 13 6 3.4186 5.4372 1.1961 14 1 2.6573 4.6785 1.0896 15 6 3.0814 6.7705 1.0979 16 7 1.8331 7.1184 0.8740 17 14 4.3981 8.0828 1.2814 18 1 4.9816 8.3882 -0.0495 19 1 3.7940 9.3139 1.8514 20 1 5.4655 7.5896 2.1885 21 6 6.1873 3.1204 2.0785 22 6 6.0799 3.4114 3.5532 23 6 5.5699 2.5842 4.4832 24 6 5.6651 3.2546 5.7242 25 6 6.2282 4.4513 5.4785 26 8 6.4828 4.5382 4.1627 27 16 2.5175 -1.4383 -0.0077 28 1 -0.3634 -1.0277 -0.0050 29 1 -0.3633 0.5182 -0.8875 30 1 -0.3633 0.5095 0.8925 31 1 1.8363 2.0648 0.0007 32 1 7.6339 1.1235 1.0300 33 1 7.8340 0.2633 -0.5153 34 1 7.4333 1.9975 -0.5075 35 1 5.8416 3.3841 -0.5009 36 1 4.0677 3.5313 -0.4988 37 1 5.1542 5.3924 2.4369 38 1 5.4916 5.4823 0.6915 39 1 1.5959 8.0564 0.8045 40 1 6.3087 2.0477 1.9277 41 1 7.0493 3.6450 1.6663 42 1 5.1654 1.5970 4.3143 43 1 5.3469 2.8782 6.6852 44 1 6.4428 5.2114 6.2151 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097032531.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:22 Heat of formation + Delta-G solvation = 121.291863 kcal Electronic energy + Delta-G solvation = -28287.050697 eV Core-core repulsion = 24527.694781 eV Total energy + Delta-G solvation = -3759.355915 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.54081 -42.14311 -37.46874 -36.64034 -32.84277 -32.57694 -32.50911 -31.47562 -30.33897 -28.88067 -27.64376 -26.32266 -25.13016 -23.88416 -22.91663 -21.46066 -20.94255 -20.06458 -19.65182 -19.39854 -17.92564 -17.14900 -16.86210 -16.17242 -15.88622 -15.64334 -14.92818 -14.74314 -14.44464 -14.07783 -13.92428 -13.81081 -13.57629 -13.33195 -13.02780 -12.72316 -12.56214 -12.47853 -12.42292 -12.34611 -12.23152 -11.88134 -11.79815 -11.61453 -11.41468 -11.08741 -11.04759 -10.70829 -10.55364 -10.11720 -9.94709 -9.88027 -9.54393 -9.42471 -8.65478 -8.45621 -8.12437 -7.65571 -7.44075 -6.14629 -4.11981 0.97635 1.03915 1.67007 2.10294 2.40310 2.72929 2.91587 3.01328 3.21725 3.30641 3.35103 3.39435 4.34986 4.45815 4.74687 4.81360 4.92598 5.02929 5.11138 5.16087 5.18459 5.29742 5.36964 5.38519 5.42693 5.54763 5.63894 5.66520 5.69263 5.76403 5.81805 5.94567 6.00310 6.07261 6.14980 6.29427 6.44440 6.47457 6.68049 6.68542 6.76936 6.88192 7.02598 7.48629 7.54215 7.67482 7.77518 7.87266 8.53019 8.91758 9.47529 10.98218 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.008923 B = 0.004432 C = 0.003645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3137.366253 B = 6316.109641 C = 7680.322772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.198 4.198 3 C 0.066 3.934 4 N -0.388 5.388 5 C 0.133 3.867 6 N -0.456 5.456 7 C 0.032 3.968 8 C -0.071 4.071 9 C 0.012 3.988 10 C 0.133 3.867 11 N -0.517 5.517 12 C 0.159 3.841 13 C -0.507 4.507 14 H 0.078 0.922 15 C 0.071 3.929 16 N -0.898 5.898 17 Si 0.870 3.130 18 H -0.276 1.276 19 H -0.285 1.285 20 H -0.265 1.265 21 C 0.122 3.878 22 C 0.014 3.986 23 C -0.200 4.200 24 C -0.215 4.215 25 C -0.048 4.048 26 O -0.174 6.174 27 S 0.162 5.838 28 H 0.072 0.928 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.186 0.814 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.056 0.944 36 H 0.100 0.900 37 H 0.037 0.963 38 H -0.010 1.010 39 H 0.264 0.736 40 H 0.102 0.898 41 H 0.043 0.957 42 H 0.140 0.860 43 H 0.142 0.858 44 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.986 -13.021 0.502 13.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.317 4.317 3 C -0.062 4.062 4 N -0.065 5.065 5 C -0.233 4.233 6 N -0.180 5.180 7 C -0.099 4.099 8 C -0.129 4.129 9 C -0.103 4.103 10 C 0.005 3.995 11 N -0.242 5.242 12 C 0.034 3.966 13 C -0.546 4.546 14 H 0.096 0.904 15 C -0.131 4.131 16 N -0.537 5.537 17 Si 0.697 3.303 18 H -0.202 1.202 19 H -0.211 1.211 20 H -0.189 1.189 21 C -0.006 4.006 22 C -0.036 4.036 23 C -0.220 4.220 24 C -0.234 4.234 25 C -0.116 4.116 26 O -0.070 6.070 27 S 0.410 5.590 28 H 0.091 0.909 29 H 0.101 0.899 30 H 0.103 0.897 31 H 0.203 0.797 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.074 0.926 36 H 0.118 0.882 37 H 0.055 0.945 38 H 0.008 0.992 39 H 0.074 0.926 40 H 0.120 0.880 41 H 0.061 0.939 42 H 0.158 0.842 43 H 0.160 0.840 44 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 3.773 -14.811 0.555 15.294 hybrid contribution 0.821 3.270 0.058 3.372 sum 4.595 -11.541 0.613 12.437 Atomic orbital electron populations 1.20252 0.85482 1.03274 1.03969 1.23686 1.01185 0.94346 1.12493 1.20437 0.80162 1.02169 1.03411 1.43494 1.05177 1.07479 1.50379 1.25965 0.97637 0.86782 1.12954 1.70418 1.01887 1.24110 1.21626 1.20445 0.95939 0.87551 1.05941 1.20242 0.87998 1.02008 1.02668 1.21253 0.81754 0.95324 1.11985 1.20404 1.02831 0.85483 0.90829 1.62032 1.33995 1.14947 1.13244 1.20314 0.98243 0.81468 0.96605 1.20915 0.92005 0.92811 1.48847 0.90428 1.24855 0.95187 0.98326 0.94683 1.69874 1.16957 1.17293 1.49602 0.86931 0.82642 0.81844 0.78898 1.20218 1.21082 1.18925 1.20805 0.92966 1.01329 0.85485 1.22233 1.01505 0.84744 0.95153 1.21414 1.06442 1.02000 0.92123 1.21729 1.06535 0.95900 0.99216 1.23884 1.04914 0.99837 0.82976 1.84048 1.64862 1.37792 1.20292 1.84431 0.87673 1.03479 1.83454 0.90871 0.89911 0.89750 0.79681 0.90739 0.90701 0.90793 0.92610 0.88162 0.94465 0.99197 0.92607 0.87993 0.93867 0.84169 0.83973 0.78688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.62 10.36 36.01 0.37 -0.24 16 2 C -0.20 -2.44 6.42 -36.00 -0.23 -2.67 16 3 C 0.07 0.99 11.11 -16.71 -0.19 0.81 16 4 N -0.39 -6.55 3.19 -59.61 -0.19 -6.74 16 5 C 0.13 2.20 8.92 -88.71 -0.79 1.41 16 6 N -0.46 -7.98 11.32 -9.77 -0.11 -8.09 16 7 C 0.03 0.52 6.14 -83.08 -0.51 0.01 16 8 C -0.07 -0.88 9.09 36.01 0.33 -0.56 16 9 C 0.01 0.20 6.16 -80.75 -0.50 -0.30 16 10 C 0.13 2.38 5.12 -4.98 -0.03 2.35 16 11 N -0.52 -10.37 4.41 -238.97 -1.05 -11.42 16 12 C 0.16 3.73 3.68 -4.98 -0.02 3.72 16 13 C -0.51 -13.81 9.10 -34.44 -0.31 -14.12 16 14 H 0.08 2.28 8.06 -52.48 -0.42 1.86 16 15 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 16 N -0.90 -26.59 13.96 55.43 0.77 -25.81 16 17 Si 0.87 21.10 27.38 -169.99 -4.65 16.45 16 18 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 19 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 20 H -0.26 -6.31 6.68 56.52 0.38 -5.93 16 21 C 0.12 2.11 4.77 -4.98 -0.02 2.09 16 22 C 0.01 0.26 5.94 -35.63 -0.21 0.05 16 23 C -0.20 -3.46 10.81 -39.71 -0.43 -3.89 16 24 C -0.21 -3.32 10.91 -39.70 -0.43 -3.75 16 25 C -0.05 -0.75 12.09 29.42 0.36 -0.39 16 26 O -0.17 -3.26 9.63 5.72 0.06 -3.21 16 27 S 0.16 2.05 23.35 -107.50 -2.51 -0.46 16 28 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.19 2.78 8.06 -52.49 -0.42 2.36 16 32 H 0.07 0.86 6.77 -51.93 -0.35 0.51 16 33 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.07 0.82 7.12 -51.93 -0.37 0.45 16 35 H 0.06 0.89 7.11 -51.92 -0.37 0.52 16 36 H 0.10 1.97 7.43 -51.93 -0.39 1.59 16 37 H 0.04 0.93 5.48 -51.93 -0.28 0.65 16 38 H -0.01 -0.22 7.17 -51.93 -0.37 -0.60 16 39 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 40 H 0.10 1.64 4.13 -51.93 -0.21 1.42 16 41 H 0.04 0.70 8.12 -51.93 -0.42 0.28 16 42 H 0.14 2.31 8.06 -52.48 -0.42 1.89 16 43 H 0.14 1.79 8.06 -52.49 -0.42 1.37 16 44 H 0.20 2.21 8.06 -52.49 -0.42 1.79 16 LS Contribution 374.69 15.07 5.65 5.65 Total: -1.00 -33.15 374.69 -10.49 -43.64 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -5.73 Total: 3.56 kcal Atomic # 6 Polarization: -10.86 SS G_CDS: -2.71 Total: -13.57 kcal Atomic # 7 Polarization: -51.49 SS G_CDS: -0.58 Total: -52.07 kcal Atomic # 8 Polarization: -3.26 SS G_CDS: 0.06 Total: -3.21 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.65 Total: 16.45 kcal Atomic # 16 Polarization: 2.05 SS G_CDS: -2.51 Total: -0.46 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.15 -10.49 -43.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097032531.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.933 kcal (2) G-P(sol) polarization free energy of solvation -33.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.641 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds