Wall clock time and date at job start Tue Mar 31 2020 06:11:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38312 * 119.84836 * 2 1 4 4 C 1.38119 * 120.12012 * 180.02562 * 3 2 1 5 5 Cl 1.73598 * 120.08776 * 179.97438 * 4 3 2 6 6 C 1.39645 * 119.83020 * 359.97438 * 4 3 2 7 7 C 1.47938 * 120.15126 * 180.02562 * 6 4 3 8 8 O 1.35241 * 120.00221 * 180.02562 * 7 6 4 9 9 N 1.30024 * 119.99659 * 0.02562 * 7 6 4 10 10 S 1.65597 * 119.99909 * 179.97438 * 9 7 6 11 11 O 1.42104 * 104.27970 * 296.07166 * 10 9 7 12 12 O 1.42103 * 104.27490 * 63.93106 * 10 9 7 13 13 C 1.81401 * 104.44817 * 180.02562 * 10 9 7 14 14 C 1.53007 * 109.46892 * 180.02562 * 13 10 9 15 15 C 1.50701 * 109.46673 * 179.97438 * 14 13 10 16 16 H 1.07999 * 120.00457 * 359.97438 * 15 14 13 17 17 C 1.37879 * 119.99337 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99582 * 180.02562 * 17 15 14 19 19 Si 1.86797 * 120.00486 * 359.97438 * 17 15 14 20 20 H 1.48503 * 109.47166 * 90.00132 * 19 17 15 21 21 H 1.48496 * 109.47211 * 210.00117 * 19 17 15 22 22 H 1.48501 * 109.47054 * 330.00369 * 19 17 15 23 23 C 1.39492 * 119.70543 * 0.02562 * 6 4 3 24 24 C 1.37986 * 119.87386 * 359.72508 * 23 6 4 25 25 C 1.50694 * 119.91497 * 180.27023 * 24 23 6 26 26 H 1.09002 * 109.47152 * 90.00333 * 1 2 3 27 27 H 1.09001 * 109.46980 * 330.00434 * 1 2 3 28 28 H 1.09004 * 109.47113 * 210.00415 * 1 2 3 29 29 H 1.07997 * 119.94217 * 359.97295 * 3 2 1 30 30 H 0.96697 * 113.99976 * 180.02562 * 8 7 6 31 31 H 1.09000 * 109.46803 * 299.99846 * 13 10 9 32 32 H 1.08997 * 109.47375 * 60.00174 * 13 10 9 33 33 H 1.08991 * 109.47120 * 299.99730 * 14 13 10 34 34 H 1.09004 * 109.46803 * 60.00113 * 14 13 10 35 35 H 0.97006 * 120.00047 * 180.02562 * 18 17 15 36 36 H 1.07995 * 120.06410 * 179.97438 * 23 6 4 37 37 H 1.09001 * 109.47225 * 270.27569 * 25 24 23 38 38 H 1.08994 * 109.47498 * 30.27811 * 25 24 23 39 39 H 1.08999 * 109.46853 * 150.27739 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1954 1.1996 0.0000 4 6 3.5766 1.2062 -0.0005 5 17 4.4398 2.7124 -0.0012 6 6 4.2770 -0.0019 -0.0005 7 6 5.7564 -0.0032 -0.0005 8 8 6.4316 -1.1750 -0.0011 9 7 6.4074 1.1223 0.0000 10 16 8.0633 1.1210 0.0006 11 8 8.4129 0.5152 1.2376 12 8 8.4137 0.5158 -1.2364 13 6 8.5174 2.8772 0.0020 14 6 10.0417 3.0099 0.0020 15 6 10.4188 4.4690 0.0025 16 1 9.6485 5.2259 0.0023 17 6 11.7475 4.8374 0.0021 18 7 12.0767 6.1107 0.0030 19 14 13.0799 3.5283 0.0016 20 1 13.4326 3.1814 -1.3986 21 1 14.2830 4.0462 0.7013 22 1 12.5834 2.3164 0.7017 23 6 3.5755 -1.2076 -0.0005 24 6 2.1956 -1.1999 0.0052 25 6 1.4369 -2.5019 0.0114 26 1 -0.3633 -0.0001 -1.0277 27 1 -0.3633 0.8900 0.5138 28 1 -0.3633 -0.8900 0.5139 29 1 1.6520 2.1330 -0.0004 30 1 7.3934 -1.0747 -0.0006 31 1 8.1112 3.3582 -0.8879 32 1 8.1106 3.3570 0.8921 33 1 10.4482 2.5289 0.8915 34 1 10.4481 2.5302 -0.8884 35 1 13.0114 6.3701 0.0023 36 1 4.1112 -2.1453 -0.0010 37 1 1.2539 -2.8207 -1.0148 38 1 2.0228 -3.2615 0.5288 39 1 0.4850 -2.3652 0.5246 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097081005.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:26 Heat of formation + Delta-G solvation = -69.058096 kcal Electronic energy + Delta-G solvation = -25242.651631 eV Core-core repulsion = 21304.482827 eV Total energy + Delta-G solvation = -3938.168804 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 345.063 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.64273 -39.42819 -36.81410 -36.64495 -35.75415 -34.49618 -33.98351 -33.06532 -32.69015 -31.49908 -28.53058 -27.13519 -26.03548 -23.92507 -22.82692 -21.47847 -20.55608 -19.66444 -18.20559 -17.55910 -17.10457 -16.37491 -16.14360 -16.11660 -15.72722 -15.21681 -14.83071 -14.68343 -14.31566 -14.13132 -13.97464 -13.71887 -13.34173 -13.28839 -13.01406 -12.81083 -12.76382 -12.44167 -11.99227 -11.91770 -11.80263 -11.78595 -11.66793 -11.32194 -11.27271 -11.26476 -11.24493 -10.87908 -10.45640 -10.15813 -9.68187 -9.46463 -9.38016 -9.30623 -8.87399 -8.66485 -6.16473 -4.17933 0.03506 0.50356 0.74454 1.70206 2.00690 2.55875 2.98963 3.11566 3.26210 3.33337 3.37247 3.59213 4.19100 4.24295 4.35504 4.40325 4.54357 4.66955 4.68246 4.88597 5.01270 5.08327 5.11820 5.14943 5.23673 5.32725 5.40469 5.50212 5.55307 5.58525 5.60516 5.67123 5.71614 6.01311 6.25348 6.25906 6.78662 6.90851 7.00218 7.52896 8.36295 8.84934 9.42549 10.95801 Molecular weight = 345.06amu Principal moments of inertia in cm(-1) A = 0.024465 B = 0.002825 C = 0.002577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.205894 B = 9910.205980 C =10860.735303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.038 4.038 3 C -0.125 4.125 4 C 0.030 3.970 5 Cl -0.005 7.005 6 C -0.072 4.072 7 C 0.531 3.469 8 O -0.496 6.496 9 N -0.966 5.966 10 S 2.492 3.508 11 O -0.983 6.983 12 O -0.983 6.983 13 C -0.525 4.525 14 C -0.009 4.009 15 C -0.519 4.519 16 H 0.080 0.920 17 C 0.073 3.927 18 N -0.894 5.894 19 Si 0.869 3.131 20 H -0.271 1.271 21 H -0.281 1.281 22 H -0.263 1.263 23 C -0.048 4.048 24 C -0.101 4.101 25 C -0.117 4.117 26 H 0.080 0.920 27 H 0.073 0.927 28 H 0.077 0.923 29 H 0.145 0.855 30 H 0.405 0.595 31 H 0.133 0.867 32 H 0.133 0.867 33 H 0.033 0.967 34 H 0.029 0.971 35 H 0.267 0.733 36 H 0.147 0.853 37 H 0.075 0.925 38 H 0.071 0.929 39 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.897 -15.937 -0.024 31.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.039 4.039 3 C -0.143 4.143 4 C 0.001 3.999 5 Cl 0.025 6.975 6 C -0.076 4.076 7 C 0.313 3.687 8 O -0.292 6.292 9 N -0.826 5.826 10 S 2.596 3.404 11 O -0.972 6.972 12 O -0.972 6.972 13 C -0.661 4.661 14 C -0.049 4.049 15 C -0.558 4.558 16 H 0.098 0.902 17 C -0.130 4.130 18 N -0.532 5.532 19 Si 0.696 3.304 20 H -0.196 1.196 21 H -0.207 1.207 22 H -0.187 1.187 23 C -0.068 4.068 24 C -0.101 4.101 25 C -0.173 4.173 26 H 0.098 0.902 27 H 0.092 0.908 28 H 0.096 0.904 29 H 0.162 0.838 30 H 0.265 0.735 31 H 0.151 0.849 32 H 0.152 0.848 33 H 0.052 0.948 34 H 0.047 0.953 35 H 0.077 0.923 36 H 0.165 0.835 37 H 0.094 0.906 38 H 0.090 0.910 39 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -26.641 -16.071 -0.019 31.113 hybrid contribution 1.928 -0.104 -0.033 1.931 sum -24.714 -16.175 -0.052 29.536 Atomic orbital electron populations 1.20984 0.90054 1.03719 1.03195 1.19997 0.96733 0.91836 0.95332 1.20948 0.91258 0.99136 1.02994 1.21036 0.92343 0.88270 0.98254 1.98457 1.76070 1.27569 1.95417 1.17732 0.86018 0.93516 1.10311 1.21513 0.92086 0.78858 0.76200 1.84925 1.25667 1.32461 1.86104 1.74750 1.34205 1.34038 1.39627 1.08282 0.75329 0.81851 0.74937 1.93623 1.83338 1.75193 1.45053 1.93622 1.83341 1.75207 1.45060 1.29568 1.08661 1.16016 1.11807 1.19501 0.86093 1.01300 0.97969 1.20808 0.93519 0.89054 1.52386 0.90172 1.24971 0.98558 0.95390 0.94122 1.69879 1.18129 1.15300 1.49861 0.86924 0.81806 0.82592 0.79121 1.19640 1.20664 1.18714 1.21278 0.93625 0.97132 0.94793 1.19761 0.93024 0.95668 1.01695 1.20879 1.00148 0.93373 1.02927 0.90158 0.90800 0.90397 0.83772 0.73532 0.84879 0.84848 0.94839 0.95293 0.92333 0.83543 0.90614 0.91032 0.90684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.45 9.60 36.01 0.35 -0.10 16 2 C -0.04 -0.25 5.88 -104.55 -0.62 -0.87 16 3 C -0.12 -1.01 9.47 -39.60 -0.37 -1.39 16 4 C 0.03 0.33 6.35 -39.10 -0.25 0.08 16 5 Cl -0.01 -0.07 25.74 -51.86 -1.33 -1.40 16 6 C -0.07 -0.84 5.88 -104.93 -0.62 -1.46 16 7 C 0.53 7.70 7.75 -14.34 -0.11 7.58 16 8 O -0.50 -6.86 12.74 -30.42 -0.39 -7.25 16 9 N -0.97 -15.71 7.34 31.98 0.23 -15.47 16 10 S 2.49 47.18 4.31 -107.50 -0.46 46.72 16 11 O -0.98 -20.27 17.08 -61.04 -1.04 -21.31 16 12 O -0.98 -20.21 17.08 -61.06 -1.04 -21.26 16 13 C -0.52 -10.58 6.12 37.16 0.23 -10.35 16 14 C -0.01 -0.22 4.05 -27.88 -0.11 -0.34 16 15 C -0.52 -14.82 9.66 -34.44 -0.33 -15.16 16 16 H 0.08 2.40 7.99 -52.49 -0.42 1.98 16 17 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 18 N -0.89 -27.34 13.96 55.43 0.77 -26.57 16 19 Si 0.87 21.81 27.47 -169.99 -4.67 17.14 16 20 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.26 -6.39 6.54 56.52 0.37 -6.02 16 23 C -0.05 -0.43 9.26 -39.21 -0.36 -0.79 16 24 C -0.10 -0.70 5.87 -104.68 -0.61 -1.31 16 25 C -0.12 -0.48 9.59 36.00 0.35 -0.13 16 26 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 27 H 0.07 0.22 8.08 -51.93 -0.42 -0.20 16 28 H 0.08 0.20 5.92 -51.93 -0.31 -0.11 16 29 H 0.14 0.89 8.06 -52.49 -0.42 0.46 16 30 H 0.41 5.86 5.41 52.33 0.28 6.14 16 31 H 0.13 2.49 8.14 -51.92 -0.42 2.06 16 32 H 0.13 2.49 8.14 -51.93 -0.42 2.07 16 33 H 0.03 0.82 7.20 -51.93 -0.37 0.45 16 34 H 0.03 0.70 7.57 -51.93 -0.39 0.31 16 35 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 36 H 0.15 1.11 7.61 -52.49 -0.40 0.71 16 37 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 38 H 0.07 0.26 8.08 -51.93 -0.42 -0.16 16 39 H 0.07 0.21 5.92 -51.93 -0.31 -0.10 16 LS Contribution 354.15 15.07 5.34 5.34 Total: -1.00 -35.27 354.15 -9.20 -44.47 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: -4.04 Total: 1.80 kcal Atomic # 6 Polarization: -19.64 SS G_CDS: -2.57 Total: -22.20 kcal Atomic # 7 Polarization: -43.05 SS G_CDS: 1.01 Total: -42.04 kcal Atomic # 8 Polarization: -47.35 SS G_CDS: -2.47 Total: -49.82 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.67 Total: 17.14 kcal Atomic # 16 Polarization: 47.18 SS G_CDS: -0.46 Total: 46.72 kcal Atomic # 17 Polarization: -0.07 SS G_CDS: -1.33 Total: -1.40 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -35.27 -9.20 -44.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097081005.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.591 kcal (2) G-P(sol) polarization free energy of solvation -35.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds