Wall clock time and date at job start Tue Mar 31 2020 06:12:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 5 5 H 1.07998 * 120.00039 * 119.99581 * 4 2 1 6 6 C 1.37880 * 119.99815 * 300.00179 * 4 2 1 7 7 N 1.31508 * 119.99915 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99777 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47155 * 89.99872 * 8 6 4 10 10 H 1.48495 * 109.46964 * 209.99990 * 8 6 4 11 11 H 1.48499 * 109.46909 * 330.00049 * 8 6 4 12 12 N 1.46506 * 109.47289 * 240.00326 * 2 1 3 13 13 C 1.46499 * 119.99936 * 299.99999 * 12 2 1 14 14 S 1.65603 * 120.00110 * 119.99604 * 12 2 1 15 15 O 1.42103 * 106.39984 * 203.54254 * 14 12 2 16 16 O 1.42101 * 106.40348 * 336.46504 * 14 12 2 17 17 C 1.76204 * 107.21522 * 90.00068 * 14 12 2 18 18 C 1.37974 * 119.86750 * 115.00094 * 17 14 12 19 19 C 1.38343 * 120.33544 * 180.02562 * 18 17 14 20 20 Cl 1.73595 * 120.13414 * 180.22384 * 19 18 17 21 21 C 1.38488 * 119.73814 * 0.21014 * 19 18 17 22 22 C 1.37698 * 119.97181 * 359.92069 * 21 19 18 23 23 C 1.38925 * 120.79194 * 359.44592 * 22 21 19 24 24 O 1.36153 * 111.21793 * 180.88091 * 23 22 21 25 25 C 1.43775 * 109.29563 * 341.20470 * 24 23 22 26 26 C 1.51647 * 132.17103 * 179.46195 * 22 21 19 27 27 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 28 28 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 30 30 H 0.97001 * 119.99839 * 180.02562 * 7 6 4 31 31 H 1.09000 * 109.46842 * 89.99634 * 13 12 2 32 32 H 1.08994 * 109.47173 * 210.00167 * 13 12 2 33 33 H 1.08998 * 109.46730 * 330.00200 * 13 12 2 34 34 H 1.07998 * 119.83328 * 359.97438 * 18 17 14 35 35 H 1.08005 * 120.01783 * 179.90916 * 21 19 18 36 36 H 1.09000 * 110.74981 * 269.27427 * 25 24 23 37 37 H 1.09002 * 110.90510 * 145.99485 * 25 24 23 38 38 H 1.09007 * 110.93752 * 313.63960 * 26 22 21 39 39 H 1.08998 * 110.93460 * 77.27105 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3215 -1.1204 4.0079 9 1 3.6298 -0.5460 4.4123 10 1 1.3433 -0.9494 5.1119 11 1 2.4860 -2.5663 3.7118 12 7 2.0184 -0.6906 -1.1962 13 6 1.6645 -2.0931 -1.4281 14 16 2.9704 0.1143 -2.2863 15 8 2.8227 -0.5644 -3.5260 16 8 2.6904 1.4974 -2.1193 17 6 4.6445 -0.1180 -1.7881 18 6 5.5102 -0.8252 -2.5968 19 6 6.8264 -1.0139 -2.2149 20 17 7.9127 -1.8995 -3.2392 21 6 7.2741 -0.4932 -1.0122 22 6 6.4102 0.2104 -0.2031 23 6 5.0898 0.4173 -0.5825 24 8 4.4186 1.1495 0.3487 25 6 5.1315 1.1000 1.5963 26 6 6.5948 0.8782 1.1458 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 -0.8900 30 1 0.7096 1.1617 3.4844 31 1 0.7376 -2.1442 -1.9994 32 1 2.4629 -2.5818 -1.9864 33 1 1.5295 -2.5968 -0.4710 34 1 5.1584 -1.2342 -3.5324 35 1 8.3004 -0.6391 -0.7089 36 1 4.7846 0.2660 2.2064 37 1 5.0326 2.0405 2.1383 38 1 7.1198 0.2197 1.8379 39 1 7.1190 1.8281 1.0416 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097086258.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:05 Heat of formation + Delta-G solvation = -74.668995 kcal Electronic energy + Delta-G solvation = -27659.749500 eV Core-core repulsion = 23721.337389 eV Total energy + Delta-G solvation = -3938.412111 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 345.063 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.04930 -37.80175 -36.63724 -36.17052 -36.12205 -35.24058 -32.83125 -32.62037 -30.03392 -29.24972 -29.06962 -25.51603 -25.19452 -23.76467 -22.57554 -22.00287 -20.72776 -18.41517 -17.55745 -17.16733 -16.74927 -16.47834 -16.40680 -15.93850 -15.29061 -15.19210 -14.60606 -13.94549 -13.62359 -13.47506 -13.32601 -13.18379 -12.97022 -12.70866 -12.47758 -12.03150 -11.96582 -11.82657 -11.75499 -11.52739 -11.48440 -11.36756 -11.23017 -11.18993 -10.97967 -10.94625 -10.48298 -10.42660 -10.35154 -10.16381 -10.06334 -9.38801 -9.21341 -8.49574 -8.09559 -7.93805 -6.10613 -4.16855 0.73568 1.07315 1.13407 2.04857 3.11458 3.15694 3.24666 3.26440 3.44874 3.68689 4.23919 4.29178 4.33900 4.61604 4.72390 4.87761 5.12913 5.18239 5.19450 5.26619 5.54936 5.64222 5.65520 5.74846 5.79064 5.94003 6.04243 6.08426 6.19116 6.32438 6.36164 6.68259 6.88719 6.91260 7.12162 7.14712 7.48368 7.62240 7.82375 8.05042 8.26656 8.84122 9.46397 10.94732 Molecular weight = 345.06amu Principal moments of inertia in cm(-1) A = 0.011863 B = 0.005728 C = 0.004564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2359.681429 B = 4886.825312 C = 6133.169350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.266 3.734 3 H 0.070 0.930 4 C -0.514 4.514 5 H 0.059 0.941 6 C 0.068 3.932 7 N -0.883 5.883 8 Si 0.882 3.118 9 H -0.281 1.281 10 H -0.285 1.285 11 H -0.275 1.275 12 N -0.977 5.977 13 C 0.104 3.896 14 S 2.688 3.312 15 O -0.976 6.976 16 O -0.949 6.949 17 C -0.688 4.688 18 C 0.017 3.983 19 C -0.096 4.096 20 Cl -0.069 7.069 21 C -0.014 4.014 22 C -0.191 4.191 23 C 0.235 3.765 24 O -0.254 6.254 25 C 0.056 3.944 26 C -0.109 4.109 27 H 0.093 0.907 28 H 0.032 0.968 29 H 0.012 0.988 30 H 0.262 0.738 31 H 0.046 0.954 32 H 0.051 0.949 33 H 0.081 0.919 34 H 0.156 0.844 35 H 0.137 0.863 36 H 0.093 0.907 37 H 0.111 0.889 38 H 0.094 0.906 39 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.371 -2.808 -3.807 12.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.164 3.836 3 H 0.087 0.913 4 C -0.554 4.554 5 H 0.077 0.923 6 C -0.134 4.134 7 N -0.521 5.521 8 Si 0.710 3.290 9 H -0.208 1.208 10 H -0.211 1.211 11 H -0.200 1.200 12 N -0.817 5.817 13 C -0.042 4.042 14 S 2.776 3.224 15 O -0.966 6.966 16 O -0.939 6.939 17 C -0.772 4.772 18 C -0.003 4.003 19 C -0.123 4.123 20 Cl -0.041 7.041 21 C -0.033 4.033 22 C -0.193 4.193 23 C 0.184 3.816 24 O -0.164 6.164 25 C -0.019 4.019 26 C -0.146 4.146 27 H 0.112 0.888 28 H 0.051 0.949 29 H 0.032 0.968 30 H 0.073 0.927 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.099 0.901 34 H 0.173 0.827 35 H 0.155 0.845 36 H 0.111 0.889 37 H 0.129 0.871 38 H 0.112 0.888 39 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 10.905 -2.154 -4.444 11.971 hybrid contribution 1.259 -0.963 1.488 2.174 sum 12.163 -3.117 -2.956 12.900 Atomic orbital electron populations 1.22069 0.97925 0.99648 1.00820 1.18849 0.91639 0.93367 0.79768 0.91253 1.21285 1.31419 1.12527 0.90125 0.92317 1.24821 0.95262 0.94933 0.98401 1.69871 1.36229 1.22506 1.23512 0.86786 0.78621 0.80270 0.83339 1.20756 1.21104 1.19965 1.57436 1.62585 1.21601 1.40121 1.21249 0.99192 0.81731 1.02053 1.02120 0.73065 0.74002 0.73215 1.93502 1.85898 1.75869 1.41370 1.93584 1.83248 1.31008 1.86067 1.30319 1.27651 1.14870 1.04408 1.20535 0.90490 0.91394 0.97890 1.20534 0.92044 1.04910 0.94840 1.98347 1.63727 1.74593 1.67399 1.20238 0.99406 0.92774 0.90865 1.20808 0.94104 1.04957 0.99410 1.18975 0.89786 0.84397 0.88413 1.87162 1.47997 1.62167 1.19056 1.23975 0.87769 1.05075 0.85086 1.21887 0.98773 1.01154 0.92787 0.88819 0.94913 0.96848 0.92739 0.93488 0.93003 0.90052 0.82686 0.84491 0.88929 0.87073 0.88764 0.88918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.37 8.97 37.16 0.33 -3.04 16 2 C 0.27 6.30 2.28 -69.08 -0.16 6.14 16 3 H 0.07 1.83 6.26 -51.93 -0.33 1.51 16 4 C -0.51 -12.37 7.64 -34.44 -0.26 -12.63 16 5 H 0.06 1.40 7.33 -52.49 -0.38 1.02 16 6 C 0.07 1.67 5.30 -17.82 -0.09 1.58 16 7 N -0.88 -22.84 11.32 55.43 0.63 -22.22 16 8 Si 0.88 18.98 29.54 -169.99 -5.02 13.96 16 9 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 10 H -0.29 -6.28 7.11 56.52 0.40 -5.88 16 11 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 12 N -0.98 -20.33 3.06 -115.86 -0.35 -20.69 16 13 C 0.10 1.84 9.28 59.85 0.56 2.40 16 14 S 2.69 55.01 5.53 -107.50 -0.59 54.41 16 15 O -0.98 -19.87 16.02 -57.17 -0.92 -20.79 16 16 O -0.95 -22.24 16.46 -57.17 -0.94 -23.18 16 17 C -0.69 -12.58 5.93 -39.31 -0.23 -12.82 16 18 C 0.02 0.26 9.31 -39.64 -0.37 -0.11 16 19 C -0.10 -1.34 6.33 -39.45 -0.25 -1.59 16 20 Cl -0.07 -0.83 28.97 -51.86 -1.50 -2.34 16 21 C -0.01 -0.18 9.82 -39.69 -0.39 -0.57 16 22 C -0.19 -2.83 6.27 -104.10 -0.65 -3.49 16 23 C 0.23 4.28 6.69 -38.96 -0.26 4.02 16 24 O -0.25 -5.00 9.67 -20.23 -0.20 -5.19 16 25 C 0.06 0.86 8.01 38.05 0.30 1.17 16 26 C -0.11 -1.33 7.12 -26.52 -0.19 -1.52 16 27 H 0.09 2.36 6.07 -51.93 -0.32 2.04 16 28 H 0.03 0.71 7.67 -51.93 -0.40 0.31 16 29 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.26 6.52 8.31 -40.82 -0.34 6.18 16 31 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.05 0.80 7.79 -51.93 -0.40 0.40 16 33 H 0.08 1.45 7.02 -51.93 -0.36 1.08 16 34 H 0.16 2.26 7.30 -52.49 -0.38 1.87 16 35 H 0.14 1.38 8.06 -52.48 -0.42 0.96 16 36 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 37 H 0.11 1.50 8.14 -51.93 -0.42 1.08 16 38 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 LS Contribution 349.52 15.07 5.27 5.27 Total: -1.00 -29.24 349.52 -9.97 -39.20 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: -4.67 Total: 2.00 kcal Atomic # 6 Polarization: -18.79 SS G_CDS: -1.67 Total: -20.45 kcal Atomic # 7 Polarization: -43.18 SS G_CDS: 0.27 Total: -42.90 kcal Atomic # 8 Polarization: -47.10 SS G_CDS: -2.05 Total: -49.16 kcal Atomic # 14 Polarization: 18.98 SS G_CDS: -5.02 Total: 13.96 kcal Atomic # 16 Polarization: 55.01 SS G_CDS: -0.59 Total: 54.41 kcal Atomic # 17 Polarization: -0.83 SS G_CDS: -1.50 Total: -2.34 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -29.24 -9.97 -39.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097086258.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.466 kcal (2) G-P(sol) polarization free energy of solvation -29.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds