Wall clock time and date at job start Tue Mar 31 2020 06:12:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.47616 * 2 1 4 4 C 1.50703 * 109.47328 * 239.99192 * 2 1 3 5 5 H 1.07994 * 120.00256 * 240.00185 * 4 2 1 6 6 C 1.37877 * 119.99396 * 60.00418 * 4 2 1 7 7 N 1.31513 * 120.00225 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99740 * 179.97438 * 6 4 2 9 9 H 1.48493 * 109.47338 * 60.00061 * 8 6 4 10 10 H 1.48505 * 109.47297 * 180.02562 * 8 6 4 11 11 H 1.48499 * 109.47067 * 299.99905 * 8 6 4 12 12 N 1.46504 * 109.46895 * 119.99983 * 2 1 3 13 13 C 1.46496 * 120.00312 * 59.99515 * 12 2 1 14 14 S 1.65608 * 119.99639 * 240.00198 * 12 2 1 15 15 O 1.42100 * 106.40026 * 156.45967 * 14 12 2 16 16 O 1.42100 * 106.40169 * 23.53345 * 14 12 2 17 17 C 1.76204 * 107.21483 * 269.99460 * 14 12 2 18 18 C 1.37975 * 119.86732 * 115.00120 * 17 14 12 19 19 C 1.38342 * 120.33274 * 179.97438 * 18 17 14 20 20 Cl 1.73601 * 120.12862 * 179.83304 * 19 18 17 21 21 C 1.38495 * 119.74452 * 359.85218 * 19 18 17 22 22 C 1.37698 * 119.96197 * 0.02562 * 21 19 18 23 23 C 1.38916 * 120.80129 * 0.33751 * 22 21 19 24 24 O 1.36413 * 111.30835 * 179.08695 * 23 22 21 25 25 C 1.43775 * 109.09736 * 18.73755 * 24 23 22 26 26 C 1.51652 * 132.15747 * 180.33733 * 22 21 19 27 27 H 1.09005 * 109.46755 * 60.00482 * 1 2 3 28 28 H 1.08998 * 109.47616 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47346 * 300.00566 * 1 2 3 30 30 H 0.97007 * 119.99875 * 180.02562 * 7 6 4 31 31 H 1.08999 * 109.47264 * 269.99981 * 13 12 2 32 32 H 1.09001 * 109.46978 * 30.00841 * 13 12 2 33 33 H 1.09000 * 109.46915 * 149.99951 * 13 12 2 34 34 H 1.07998 * 119.83681 * 0.02562 * 18 17 14 35 35 H 1.07993 * 120.01674 * 179.97438 * 21 19 18 36 36 H 1.09002 * 110.74816 * 214.08280 * 25 24 23 37 37 H 1.08999 * 110.74501 * 90.92072 * 25 24 23 38 38 H 1.08998 * 110.93909 * 46.45099 * 26 22 21 39 39 H 1.09000 * 110.96523 * 282.77965 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7106 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.6993 -0.2396 -2.4827 7 7 0.9437 0.8300 -2.6034 8 14 2.3226 -1.1199 -4.0078 9 1 1.8281 -2.5201 -4.0080 10 1 1.8280 -0.4196 -5.2204 11 1 3.8075 -1.1193 -4.0075 12 7 2.0182 -0.6906 1.1962 13 6 1.6642 -2.0931 1.4282 14 16 2.9703 0.1143 2.2863 15 8 2.8226 -0.5644 3.5260 16 8 2.6903 1.4974 2.1192 17 6 4.6444 -0.1182 1.7882 18 6 5.3953 0.9635 1.3764 19 6 6.7107 0.7921 0.9837 20 17 7.6493 2.1562 0.4624 21 6 7.2757 -0.4721 1.0078 22 6 6.5278 -1.5519 1.4211 23 6 5.2038 -1.3930 1.8104 24 8 4.6439 -2.5862 2.1619 25 6 5.6896 -3.5335 2.4379 26 6 6.8584 -3.0254 1.5608 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 0.7090 1.1612 -3.4845 31 1 0.7374 -2.1442 1.9995 32 1 1.5294 -2.5969 0.4710 33 1 2.4627 -2.5818 1.9865 34 1 4.9542 1.9492 1.3612 35 1 8.3021 -0.6111 0.7019 36 1 5.3900 -4.5377 2.1380 37 1 5.9612 -3.5121 3.4933 38 1 7.8139 -3.1640 2.0667 39 1 6.8591 -3.5188 0.5889 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097086259.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:10 Heat of formation + Delta-G solvation = -76.987018 kcal Electronic energy + Delta-G solvation = -27241.494350 eV Core-core repulsion = 23302.981722 eV Total energy + Delta-G solvation = -3938.512628 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 345.063 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.29032 -37.92126 -36.64898 -36.20358 -36.11234 -35.27087 -33.04138 -32.58189 -30.18340 -29.45876 -29.04021 -25.47315 -25.16088 -23.99210 -22.78650 -22.19829 -20.68957 -18.49374 -17.73545 -17.32100 -16.81642 -16.70369 -16.40480 -16.11274 -15.36062 -15.24965 -14.58178 -14.16939 -13.66546 -13.49374 -13.43650 -13.25149 -13.13165 -12.74511 -12.54418 -12.15207 -12.03386 -11.94336 -11.87665 -11.68308 -11.51247 -11.33992 -11.18645 -11.17072 -10.91476 -10.85815 -10.68132 -10.42957 -10.42308 -10.18491 -10.03964 -9.41358 -9.22725 -8.46855 -8.26041 -7.93208 -6.08357 -4.16417 0.68767 1.03859 1.05414 2.05953 2.97246 3.18425 3.25650 3.31362 3.32459 3.65742 4.09111 4.26734 4.35939 4.36901 4.60146 4.77649 4.83504 5.09475 5.14800 5.21142 5.22336 5.45242 5.49205 5.60072 5.69103 5.77827 5.93651 5.98367 6.20227 6.26580 6.45385 6.71639 6.79945 6.89539 6.91243 7.12715 7.48069 7.63444 7.79437 8.05867 8.26796 8.86041 9.49541 10.96763 Molecular weight = 345.06amu Principal moments of inertia in cm(-1) A = 0.009123 B = 0.005622 C = 0.004982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3068.365517 B = 4979.605725 C = 5619.247452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.266 3.734 3 H 0.061 0.939 4 C -0.527 4.527 5 H 0.062 0.938 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.894 3.106 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.278 1.278 12 N -0.973 5.973 13 C 0.102 3.898 14 S 2.687 3.313 15 O -0.966 6.966 16 O -0.957 6.957 17 C -0.670 4.670 18 C 0.024 3.976 19 C -0.084 4.084 20 Cl -0.062 7.062 21 C -0.016 4.016 22 C -0.187 4.187 23 C 0.211 3.789 24 O -0.286 6.286 25 C 0.049 3.951 26 C -0.105 4.105 27 H 0.093 0.907 28 H 0.033 0.967 29 H 0.014 0.986 30 H 0.264 0.736 31 H 0.044 0.956 32 H 0.079 0.921 33 H 0.063 0.937 34 H 0.161 0.839 35 H 0.139 0.861 36 H 0.114 0.886 37 H 0.084 0.916 38 H 0.095 0.905 39 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.375 -6.600 7.934 16.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.163 3.837 3 H 0.079 0.921 4 C -0.566 4.566 5 H 0.080 0.920 6 C -0.136 4.136 7 N -0.524 5.524 8 Si 0.722 3.278 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.203 1.203 12 N -0.814 5.814 13 C -0.044 4.044 14 S 2.774 3.226 15 O -0.956 6.956 16 O -0.948 6.948 17 C -0.754 4.754 18 C 0.005 3.995 19 C -0.111 4.111 20 Cl -0.033 7.033 21 C -0.034 4.034 22 C -0.188 4.188 23 C 0.163 3.837 24 O -0.198 6.198 25 C -0.026 4.026 26 C -0.142 4.142 27 H 0.112 0.888 28 H 0.052 0.948 29 H 0.033 0.967 30 H 0.074 0.926 31 H 0.062 0.938 32 H 0.097 0.903 33 H 0.082 0.918 34 H 0.178 0.822 35 H 0.157 0.843 36 H 0.132 0.868 37 H 0.102 0.898 38 H 0.114 0.886 39 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 11.892 -5.982 8.484 15.786 hybrid contribution 1.248 -0.713 -1.615 2.162 sum 13.140 -6.695 6.869 16.268 Atomic orbital electron populations 1.22044 0.97586 0.99795 1.00868 1.18808 0.92043 0.92849 0.80008 0.92137 1.21339 1.31913 1.13150 0.90195 0.92015 1.24890 0.94939 0.94958 0.98860 1.69864 1.36152 1.22495 1.23903 0.86632 0.79180 0.79739 0.82289 1.20238 1.21155 1.20339 1.57376 1.62300 1.21827 1.39901 1.21342 0.99456 0.81556 1.02074 1.02193 0.73055 0.73717 0.73622 1.93536 1.85624 1.75543 1.40872 1.93551 1.83370 1.31410 1.86452 1.30395 1.28527 0.95023 1.21432 1.20625 0.91083 0.98700 0.89112 1.20617 0.93405 0.89077 1.08014 1.98361 1.72312 1.43315 1.89353 1.20248 0.99664 0.89304 0.94227 1.20651 0.95170 0.95856 1.07154 1.18863 0.91032 0.85636 0.88143 1.87026 1.32652 1.17895 1.82256 1.23968 0.85269 0.93199 1.00176 1.21807 0.99998 0.90551 1.01884 0.88804 0.94766 0.96709 0.92558 0.93751 0.90264 0.91799 0.82185 0.84278 0.86800 0.89804 0.88634 0.88509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.41 8.97 37.15 0.33 -3.08 16 2 C 0.27 6.56 2.62 -69.08 -0.18 6.38 16 3 H 0.06 1.64 6.91 -51.93 -0.36 1.28 16 4 C -0.53 -13.69 7.99 -34.44 -0.28 -13.97 16 5 H 0.06 1.58 7.33 -52.49 -0.38 1.19 16 6 C 0.07 1.76 5.30 -17.82 -0.09 1.66 16 7 N -0.89 -24.40 11.32 55.43 0.63 -23.77 16 8 Si 0.89 20.63 29.54 -169.99 -5.02 15.61 16 9 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 10 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 12 N -0.97 -20.92 3.06 -115.85 -0.35 -21.27 16 13 C 0.10 1.90 9.28 59.84 0.56 2.45 16 14 S 2.69 55.61 5.53 -107.50 -0.59 55.02 16 15 O -0.97 -20.47 17.01 -57.17 -0.97 -21.44 16 16 O -0.96 -21.74 15.51 -57.17 -0.89 -22.63 16 17 C -0.67 -12.37 5.93 -39.31 -0.23 -12.61 16 18 C 0.02 0.42 9.31 -39.64 -0.37 0.05 16 19 C -0.08 -1.25 6.33 -39.45 -0.25 -1.50 16 20 Cl -0.06 -0.83 28.97 -51.86 -1.50 -2.33 16 21 C -0.02 -0.20 9.82 -39.68 -0.39 -0.59 16 22 C -0.19 -2.52 6.27 -104.10 -0.65 -3.17 16 23 C 0.21 3.50 6.70 -38.96 -0.26 3.24 16 24 O -0.29 -4.33 8.89 -21.07 -0.19 -4.52 16 25 C 0.05 0.47 8.00 38.05 0.30 0.77 16 26 C -0.11 -0.97 7.12 -26.52 -0.19 -1.16 16 27 H 0.09 2.42 6.07 -51.93 -0.32 2.11 16 28 H 0.03 0.76 7.67 -51.93 -0.40 0.36 16 29 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 31 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.08 1.49 7.02 -51.93 -0.36 1.12 16 33 H 0.06 1.09 5.49 -51.93 -0.29 0.80 16 34 H 0.16 2.70 7.30 -52.49 -0.38 2.31 16 35 H 0.14 1.37 8.06 -52.49 -0.42 0.94 16 36 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 LS Contribution 347.80 15.07 5.24 5.24 Total: -1.00 -31.56 347.80 -9.94 -41.49 By element: Atomic # 1 Polarization: 4.71 SS G_CDS: -4.58 Total: 0.13 kcal Atomic # 6 Polarization: -19.82 SS G_CDS: -1.70 Total: -21.53 kcal Atomic # 7 Polarization: -45.32 SS G_CDS: 0.27 Total: -45.04 kcal Atomic # 8 Polarization: -46.54 SS G_CDS: -2.05 Total: -48.59 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Atomic # 16 Polarization: 55.61 SS G_CDS: -0.59 Total: 55.02 kcal Atomic # 17 Polarization: -0.83 SS G_CDS: -1.50 Total: -2.33 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.56 -9.94 -41.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097086259.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.494 kcal (2) G-P(sol) polarization free energy of solvation -31.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds