Wall clock time and date at job start Tue Mar 31 2020 06:12:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.47616 * 2 1 4 4 C 1.50703 * 109.47328 * 239.99192 * 2 1 3 5 5 H 1.07994 * 120.00256 * 240.00185 * 4 2 1 6 6 C 1.37877 * 119.99396 * 60.00418 * 4 2 1 7 7 N 1.31513 * 120.00225 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99740 * 179.97438 * 6 4 2 9 9 H 1.48493 * 109.47338 * 60.00061 * 8 6 4 10 10 H 1.48505 * 109.47297 * 180.02562 * 8 6 4 11 11 H 1.48499 * 109.47067 * 299.99905 * 8 6 4 12 12 N 1.46504 * 109.46895 * 119.99983 * 2 1 3 13 13 C 1.46496 * 120.00312 * 59.99515 * 12 2 1 14 14 S 1.65608 * 119.99639 * 240.00198 * 12 2 1 15 15 O 1.42100 * 106.40026 * 156.45967 * 14 12 2 16 16 O 1.42100 * 106.40169 * 23.53345 * 14 12 2 17 17 C 1.76204 * 107.21483 * 269.99460 * 14 12 2 18 18 C 1.37975 * 119.86732 * 115.00120 * 17 14 12 19 19 C 1.38342 * 120.33274 * 179.97438 * 18 17 14 20 20 Cl 1.73601 * 120.12862 * 179.83304 * 19 18 17 21 21 C 1.38495 * 119.74452 * 359.85218 * 19 18 17 22 22 C 1.37698 * 119.96197 * 0.02562 * 21 19 18 23 23 C 1.38916 * 120.80129 * 0.33751 * 22 21 19 24 24 O 1.36413 * 111.30835 * 179.08695 * 23 22 21 25 25 C 1.43775 * 109.09736 * 18.73755 * 24 23 22 26 26 C 1.51652 * 132.15747 * 180.33733 * 22 21 19 27 27 H 1.09005 * 109.46755 * 60.00482 * 1 2 3 28 28 H 1.08998 * 109.47616 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47346 * 300.00566 * 1 2 3 30 30 H 0.97007 * 119.99875 * 180.02562 * 7 6 4 31 31 H 1.08999 * 109.47264 * 269.99981 * 13 12 2 32 32 H 1.09001 * 109.46978 * 30.00841 * 13 12 2 33 33 H 1.09000 * 109.46915 * 149.99951 * 13 12 2 34 34 H 1.07998 * 119.83681 * 0.02562 * 18 17 14 35 35 H 1.07993 * 120.01674 * 179.97438 * 21 19 18 36 36 H 1.09002 * 110.74816 * 214.08280 * 25 24 23 37 37 H 1.08999 * 110.74501 * 90.92072 * 25 24 23 38 38 H 1.08998 * 110.93909 * 46.45099 * 26 22 21 39 39 H 1.09000 * 110.96523 * 282.77965 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7106 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.6993 -0.2396 -2.4827 7 7 0.9437 0.8300 -2.6034 8 14 2.3226 -1.1199 -4.0078 9 1 1.8281 -2.5201 -4.0080 10 1 1.8280 -0.4196 -5.2204 11 1 3.8075 -1.1193 -4.0075 12 7 2.0182 -0.6906 1.1962 13 6 1.6642 -2.0931 1.4282 14 16 2.9703 0.1143 2.2863 15 8 2.8226 -0.5644 3.5260 16 8 2.6903 1.4974 2.1192 17 6 4.6444 -0.1182 1.7882 18 6 5.3953 0.9635 1.3764 19 6 6.7107 0.7921 0.9837 20 17 7.6493 2.1562 0.4624 21 6 7.2757 -0.4721 1.0078 22 6 6.5278 -1.5519 1.4211 23 6 5.2038 -1.3930 1.8104 24 8 4.6439 -2.5862 2.1619 25 6 5.6896 -3.5335 2.4379 26 6 6.8584 -3.0254 1.5608 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 0.7090 1.1612 -3.4845 31 1 0.7374 -2.1442 1.9995 32 1 1.5294 -2.5969 0.4710 33 1 2.4627 -2.5818 1.9865 34 1 4.9542 1.9492 1.3612 35 1 8.3021 -0.6111 0.7019 36 1 5.3900 -4.5377 2.1380 37 1 5.9612 -3.5121 3.4933 38 1 7.8139 -3.1640 2.0667 39 1 6.8591 -3.5188 0.5889 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097086259.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:10 Heat of formation + Delta-G solvation = -97.605865 kcal Electronic energy + Delta-G solvation = -27242.388450 eV Core-core repulsion = 23302.981722 eV Total energy + Delta-G solvation = -3939.406728 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 345.063 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.32023 -39.05013 -38.31544 -37.91124 -37.30033 -36.96124 -34.53118 -34.02940 -31.30125 -30.94356 -30.40629 -27.26239 -27.02430 -25.03332 -23.80598 -23.29816 -22.53944 -19.97251 -19.07379 -18.55579 -18.37260 -18.27105 -17.85484 -17.18485 -17.02791 -16.54181 -16.32285 -15.37722 -15.12909 -14.88838 -14.76946 -14.49753 -14.43150 -14.03530 -13.74834 -13.71334 -13.41070 -13.30504 -13.22528 -13.16139 -12.99507 -12.95732 -12.74191 -12.70594 -12.59152 -12.32585 -12.22916 -12.13161 -11.91599 -11.68900 -11.65587 -11.17824 -10.50742 -10.49464 -9.68908 -9.34181 -8.09753 -6.24507 -0.65510 -0.38710 -0.11258 0.93657 1.43790 1.44428 1.52045 1.88446 1.98382 2.19063 2.44750 2.67887 3.17048 3.18376 3.36089 3.56953 3.69885 3.90830 4.02025 4.14974 4.17609 4.35017 4.46456 4.66815 4.71210 4.77671 4.79362 4.83547 4.89085 4.93192 4.98808 5.05056 5.14642 5.16257 5.23553 5.59898 5.68899 5.75509 5.83503 6.09114 6.27679 6.83204 7.44491 8.94861 Molecular weight = 345.06amu Principal moments of inertia in cm(-1) A = 0.009123 B = 0.005622 C = 0.004982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3068.365517 B = 4979.605725 C = 5619.247452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.271 3.729 3 H 0.027 0.973 4 C -0.532 4.532 5 H 0.064 0.936 6 C 0.019 3.981 7 N -0.916 5.916 8 Si 0.955 3.045 9 H -0.266 1.266 10 H -0.286 1.286 11 H -0.275 1.275 12 N -0.981 5.981 13 C 0.098 3.902 14 S 2.693 3.307 15 O -0.977 6.977 16 O -0.991 6.991 17 C -0.692 4.692 18 C -0.002 4.002 19 C -0.088 4.088 20 Cl -0.050 7.050 21 C -0.006 4.006 22 C -0.180 4.180 23 C 0.195 3.805 24 O -0.309 6.309 25 C 0.036 3.964 26 C -0.096 4.096 27 H 0.072 0.928 28 H 0.045 0.955 29 H 0.021 0.979 30 H 0.264 0.736 31 H 0.055 0.945 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.147 0.853 35 H 0.179 0.821 36 H 0.143 0.857 37 H 0.099 0.901 38 H 0.132 0.868 39 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.013 -9.385 7.573 19.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.167 3.833 3 H 0.045 0.955 4 C -0.571 4.571 5 H 0.083 0.917 6 C -0.181 4.181 7 N -0.555 5.555 8 Si 0.780 3.220 9 H -0.191 1.191 10 H -0.211 1.211 11 H -0.200 1.200 12 N -0.821 5.821 13 C -0.047 4.047 14 S 2.785 3.215 15 O -0.967 6.967 16 O -0.982 6.982 17 C -0.781 4.781 18 C -0.022 4.022 19 C -0.116 4.116 20 Cl -0.021 7.021 21 C -0.025 4.025 22 C -0.182 4.182 23 C 0.147 3.853 24 O -0.222 6.222 25 C -0.037 4.037 26 C -0.133 4.133 27 H 0.091 0.909 28 H 0.064 0.936 29 H 0.040 0.960 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.095 0.905 33 H 0.098 0.902 34 H 0.165 0.835 35 H 0.197 0.803 36 H 0.161 0.839 37 H 0.118 0.882 38 H 0.150 0.850 39 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 14.485 -8.787 8.155 18.802 hybrid contribution 0.534 0.118 -1.432 1.533 sum 15.019 -8.669 6.722 18.598 Atomic orbital electron populations 1.21929 0.97285 1.00277 1.00173 1.18494 0.92295 0.91473 0.81081 0.95534 1.21553 1.31695 1.13103 0.90763 0.91737 1.25650 0.95161 0.95610 1.01669 1.70001 1.37241 1.23790 1.24430 0.85666 0.78600 0.79010 0.78714 1.19107 1.21141 1.20005 1.57254 1.63389 1.22758 1.38728 1.21501 1.00689 0.80135 1.02375 1.01584 0.73827 0.72765 0.73288 1.93504 1.86410 1.75481 1.41325 1.93498 1.84508 1.33369 1.86813 1.29868 1.26785 0.96934 1.24474 1.20615 0.92571 0.98087 0.90949 1.20745 0.92710 0.90504 1.07645 1.98362 1.71620 1.43013 1.89153 1.20700 1.01242 0.88066 0.92460 1.21224 0.93645 0.98350 1.05018 1.19104 0.92421 0.85406 0.88411 1.86985 1.35181 1.17993 1.82061 1.24461 0.84440 0.93297 1.01550 1.21978 1.01353 0.86961 1.02999 0.90913 0.93564 0.95964 0.92626 0.92613 0.90456 0.90167 0.83488 0.80322 0.83911 0.88249 0.84951 0.87047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.70 8.97 71.98 0.65 -6.06 16 2 C 0.27 13.79 2.62 44.24 0.12 13.91 16 3 H 0.03 1.53 6.91 -2.39 -0.02 1.52 16 4 C -0.53 -27.94 7.99 25.60 0.20 -27.73 16 5 H 0.06 3.28 7.33 -2.91 -0.02 3.26 16 6 C 0.02 1.02 5.30 84.65 0.45 1.46 16 7 N -0.92 -51.52 11.32 21.45 0.24 -51.28 16 8 Si 0.95 41.98 29.54 68.60 2.03 44.01 16 9 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 10 H -0.29 -12.47 7.11 99.48 0.71 -11.77 16 11 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 12 N -0.98 -43.12 3.06 -520.45 -1.59 -44.71 16 13 C 0.10 3.62 9.28 127.77 1.19 4.81 16 14 S 2.69 115.74 5.53 -56.49 -0.31 115.43 16 15 O -0.98 -42.30 17.01 -128.00 -2.18 -44.47 16 16 O -0.99 -47.96 15.51 -128.00 -1.99 -49.95 16 17 C -0.69 -26.02 5.93 22.45 0.13 -25.88 16 18 C 0.00 -0.08 9.31 22.23 0.21 0.13 16 19 C -0.09 -2.55 6.33 22.36 0.14 -2.41 16 20 Cl -0.05 -1.29 28.97 -2.72 -0.08 -1.37 16 21 C -0.01 -0.14 9.82 22.20 0.22 0.07 16 22 C -0.18 -4.31 6.27 -19.53 -0.12 -4.43 16 23 C 0.20 6.21 6.70 22.67 0.15 6.36 16 24 O -0.31 -8.76 8.89 -98.30 -0.87 -9.64 16 25 C 0.04 0.55 8.00 72.56 0.58 1.13 16 26 C -0.10 -1.31 7.12 30.73 0.22 -1.09 16 27 H 0.07 3.88 6.07 -2.38 -0.01 3.86 16 28 H 0.05 2.08 7.67 -2.39 -0.02 2.06 16 29 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.26 14.18 8.31 -92.70 -0.77 13.41 16 31 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.08 2.86 7.02 -2.39 -0.02 2.84 16 33 H 0.08 2.68 5.49 -2.39 -0.01 2.67 16 34 H 0.15 5.37 7.30 -2.91 -0.02 5.35 16 35 H 0.18 2.63 8.06 -2.91 -0.02 2.61 16 36 H 0.14 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.10 1.22 8.14 -2.39 -0.02 1.21 16 38 H 0.13 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -70.46 347.80 0.47 -69.99 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: 1.09 Total: 11.70 kcal Atomic # 6 Polarization: -43.85 SS G_CDS: 4.13 Total: -39.72 kcal Atomic # 7 Polarization: -94.64 SS G_CDS: -1.35 Total: -95.99 kcal Atomic # 8 Polarization: -99.02 SS G_CDS: -5.04 Total: -104.06 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 2.03 Total: 44.01 kcal Atomic # 16 Polarization: 115.74 SS G_CDS: -0.31 Total: 115.43 kcal Atomic # 17 Polarization: -1.29 SS G_CDS: -0.08 Total: -1.37 kcal Total: -70.46 0.47 -69.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097086259.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.614 kcal (2) G-P(sol) polarization free energy of solvation -70.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds